Wall clock time and date at job start Tue Mar 31 2020 22:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 120.00341 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00158 * 3 2 1 5 5 H 1.48498 * 109.46657 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47148 * 119.99604 * 3 2 1 7 7 C 1.39945 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99753 * 197.88621 * 7 2 1 9 9 C 1.41431 * 119.99947 * 17.87803 * 7 2 1 10 10 C 1.40785 * 120.17728 * 204.44725 * 9 7 2 11 11 C 1.37712 * 120.04370 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40620 * 359.66824 * 11 10 9 13 13 C 1.39874 * 120.35803 * 0.61057 * 12 11 10 14 14 C 1.47892 * 120.02615 * 179.69321 * 13 12 11 15 15 O 1.21539 * 120.00336 * 179.72560 * 14 13 12 16 16 N 1.34780 * 119.99388 * 359.72538 * 14 13 12 17 17 C 1.46506 * 119.99397 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.47083 * 34.99975 * 17 16 14 19 19 C 1.53001 * 109.46977 * 274.99684 * 17 16 14 20 20 O 1.42897 * 109.47448 * 295.00489 * 19 17 16 21 21 C 1.52995 * 109.47032 * 154.99997 * 17 16 14 22 22 C 1.52993 * 109.47160 * 294.99884 * 21 17 16 23 23 C 1.50701 * 109.47595 * 180.02562 * 22 21 17 24 24 C 1.38236 * 120.00021 * 269.72890 * 23 22 21 25 25 C 1.38233 * 119.99790 * 179.75981 * 24 23 22 26 26 C 1.38230 * 120.00370 * 0.50636 * 25 24 23 27 27 C 1.38237 * 119.99771 * 359.74747 * 26 25 24 28 28 C 1.38230 * 120.00050 * 359.97438 * 27 26 25 29 29 C 1.39028 * 119.95175 * 359.41658 * 13 12 11 30 30 H 0.96997 * 119.99784 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.97859 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.79771 * 180.02562 * 11 10 9 33 33 H 1.07999 * 119.81858 * 180.30344 * 12 11 10 34 34 H 0.96992 * 120.00139 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.47361 * 174.99912 * 19 17 16 36 36 H 1.09008 * 109.46960 * 55.00116 * 19 17 16 37 37 H 0.96694 * 114.00480 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.47126 * 54.99872 * 21 17 16 39 39 H 1.09000 * 109.47320 * 174.99654 * 21 17 16 40 40 H 1.09001 * 109.47091 * 300.00009 * 22 21 17 41 41 H 1.09000 * 109.47400 * 60.00202 * 22 21 17 42 42 H 1.07998 * 120.00066 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.99844 * 180.22726 * 25 24 23 44 44 H 1.08005 * 120.00568 * 179.72560 * 26 25 24 45 45 H 1.07999 * 120.00011 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.00262 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.20480 * 180.25016 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3520 -2.4070 -0.3771 10 6 1.8262 -3.6500 0.0836 11 6 1.1857 -4.8120 -0.2852 12 6 0.0705 -4.7677 -1.1032 13 6 -0.4116 -3.5425 -1.5754 14 6 -1.6001 -3.5042 -2.4547 15 8 -2.0217 -2.4390 -2.8608 16 7 -2.2157 -4.6507 -2.8059 17 6 -3.3927 -4.6128 -3.6775 18 1 -3.2820 -3.8065 -4.4026 19 6 -4.6452 -4.3708 -2.8327 20 8 -4.8551 -5.4842 -1.9621 21 6 -3.5246 -5.9470 -4.4145 22 6 -2.3311 -6.1309 -5.3538 23 6 -2.4613 -7.4449 -6.0803 24 6 -1.9100 -8.5913 -5.5394 25 6 -2.0337 -9.7974 -6.2034 26 6 -2.6997 -9.8552 -7.4133 27 6 -3.2465 -8.7078 -7.9568 28 6 -3.1277 -7.5027 -7.2901 29 6 0.2237 -2.3603 -1.2128 30 1 -0.4850 0.8400 0.0004 31 1 2.6929 -3.6923 0.7267 32 1 1.5526 -5.7633 0.0709 33 1 -0.4274 -5.6844 -1.3825 34 1 -1.8795 -5.5007 -2.4815 35 1 -5.5084 -4.2540 -3.4880 36 1 -4.5141 -3.4655 -2.2397 37 1 -5.6342 -5.3993 -1.3957 38 1 -3.5460 -6.7615 -3.6904 39 1 -4.4476 -5.9521 -4.9943 40 1 -2.3098 -5.3164 -6.0779 41 1 -1.4082 -6.1259 -4.7740 42 1 -1.3856 -8.5454 -4.5964 43 1 -1.6062 -10.6938 -5.7790 44 1 -2.7925 -10.7968 -7.9343 45 1 -3.7664 -8.7528 -8.9023 46 1 -3.5546 -6.6062 -7.7149 47 1 -0.1475 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928263687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:30 Heat of formation + Delta-G solvation = -60.171022 kcal Electronic energy + Delta-G solvation = -28223.321139 eV Core-core repulsion = 24334.651405 eV Total energy + Delta-G solvation = -3888.669734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.72769 -39.20308 -37.52531 -36.64750 -35.17765 -33.76246 -33.11032 -31.03563 -30.91219 -29.57862 -29.35413 -27.77880 -25.29239 -24.15118 -22.86310 -22.71033 -21.12976 -20.97338 -20.40744 -19.56382 -17.78403 -17.34244 -16.91104 -16.26119 -15.80274 -15.41721 -15.27140 -15.12375 -14.73645 -14.60533 -14.17029 -13.78750 -13.59021 -13.55295 -13.43951 -13.21095 -13.11654 -12.79714 -12.52652 -12.44107 -12.31353 -11.65211 -11.57913 -11.46615 -11.27309 -11.14023 -11.07587 -10.85994 -10.78940 -10.70379 -10.49202 -10.03178 -9.95595 -9.67963 -9.19946 -9.07439 -8.98343 -8.85993 -8.58370 -7.61260 -7.50314 -6.79292 -4.40257 1.20987 1.24912 2.23121 2.83391 3.07566 3.09300 3.17519 3.62931 3.69313 3.87045 3.92538 4.35097 4.51060 4.65305 4.69267 4.82361 4.94514 4.99607 5.07274 5.13477 5.36655 5.38510 5.41290 5.52008 5.58256 5.62450 5.67108 5.76445 5.88640 5.89314 5.92656 6.07205 6.12641 6.25606 6.30792 6.31741 6.35660 6.53492 6.73576 6.86416 6.91987 7.00320 7.04608 7.22694 7.39793 7.62882 7.72433 7.78568 7.94531 8.13289 8.21606 8.51936 8.81290 8.84955 8.98117 10.15378 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002440 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.220759 B =11472.318639 C =12051.224297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.215 4.215 13 C -0.127 4.127 14 C 0.565 3.435 15 O -0.551 6.551 16 N -0.723 5.723 17 C 0.150 3.850 18 H 0.097 0.903 19 C 0.063 3.937 20 O -0.567 6.567 21 C -0.111 4.111 22 C -0.086 4.086 23 C -0.074 4.074 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.093 4.093 30 H 0.285 0.715 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.401 0.599 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.375 0.625 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 -13.816 -10.707 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.235 4.235 13 C -0.131 4.131 14 C 0.356 3.644 15 O -0.429 6.429 16 N -0.376 5.376 17 C 0.044 3.956 18 H 0.115 0.885 19 C -0.016 4.016 20 O -0.372 6.372 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.074 4.074 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.137 4.137 29 C -0.114 4.114 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.236 0.764 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.221 0.779 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.910 -13.086 -11.292 19.446 hybrid contribution -0.111 0.489 0.519 0.721 sum -9.020 -12.598 -10.774 18.872 Atomic orbital electron populations 1.69786 1.07568 1.29807 1.33648 1.25962 0.94765 1.01516 0.92324 0.86332 0.80120 0.80130 0.79978 1.18723 1.20252 1.18972 1.19549 0.98203 0.91085 1.40117 0.90147 1.17597 0.91239 0.92430 0.89189 1.21098 1.03511 0.92768 1.05751 1.20437 0.96047 0.96708 0.98489 1.20348 1.01072 0.94693 1.07421 1.19471 0.96587 0.95255 1.01747 1.18863 0.83173 0.82916 0.79487 1.90679 1.66751 1.29902 1.55594 1.45926 1.30149 1.09764 1.51774 1.20968 0.84443 0.98579 0.91563 0.88491 1.22672 0.96971 0.89253 0.92733 1.86460 1.51229 1.43484 1.56047 1.21715 0.97990 0.97248 0.97976 1.20691 0.99637 0.93782 0.98209 1.19968 0.97064 0.95484 0.94895 1.21131 0.99874 0.92289 1.00090 1.21154 0.99224 0.97814 0.95467 1.21120 0.99072 0.98299 0.96314 1.21123 1.00005 0.92882 0.99842 1.21075 0.99581 0.97945 0.95141 1.21630 0.96509 0.96465 0.96749 0.90438 0.88671 0.88948 0.89232 0.76355 0.93377 0.92741 0.77877 0.90345 0.90813 0.90861 0.90310 0.85904 0.86192 0.86402 0.86321 0.86170 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.80 10.96 55.55 0.61 -20.19 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.10 2.60 5.57 -106.87 -0.60 2.01 16 10 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 11 C -0.10 -2.12 10.01 -39.72 -0.40 -2.51 16 12 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 14 C 0.56 12.16 7.74 -12.31 -0.10 12.07 16 15 O -0.55 -13.45 16.00 5.33 0.09 -13.36 16 16 N -0.72 -11.86 4.43 -54.73 -0.24 -12.10 16 17 C 0.15 2.05 2.37 -67.93 -0.16 1.89 16 18 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 19 C 0.06 0.81 6.85 37.16 0.25 1.06 16 20 O -0.57 -6.93 12.83 -35.23 -0.45 -7.38 16 21 C -0.11 -1.22 4.45 -26.74 -0.12 -1.34 16 22 C -0.09 -0.94 5.23 -27.89 -0.15 -1.08 16 23 C -0.07 -0.79 5.13 -104.62 -0.54 -1.32 16 24 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 25 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 26 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 28 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 29 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 30 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 31 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 34 H 0.40 6.06 6.62 -40.82 -0.27 5.79 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.37 3.05 9.12 45.56 0.42 3.47 16 38 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.13 3.84 5.74 -52.49 -0.30 3.54 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -31.01 395.61 -10.82 -41.83 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -5.88 Total: 15.84 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -5.87 Total: -24.39 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.37 Total: -32.29 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.37 Total: -20.75 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.01 -10.82 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928263687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.341 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds