Wall clock time and date at job start Tue Mar 31 2020 22:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 120.00341 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00158 * 3 2 1 5 5 H 1.48498 * 109.46657 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47148 * 119.99604 * 3 2 1 7 7 C 1.39945 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99753 * 197.88621 * 7 2 1 9 9 C 1.41431 * 119.99947 * 17.87803 * 7 2 1 10 10 C 1.40785 * 120.17728 * 204.44725 * 9 7 2 11 11 C 1.37712 * 120.04370 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40620 * 359.66824 * 11 10 9 13 13 C 1.39874 * 120.35803 * 0.61057 * 12 11 10 14 14 C 1.47892 * 120.02615 * 179.69321 * 13 12 11 15 15 O 1.21539 * 120.00336 * 179.72560 * 14 13 12 16 16 N 1.34780 * 119.99388 * 359.72538 * 14 13 12 17 17 C 1.46506 * 119.99397 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.47083 * 34.99975 * 17 16 14 19 19 C 1.53001 * 109.46977 * 274.99684 * 17 16 14 20 20 O 1.42897 * 109.47448 * 295.00489 * 19 17 16 21 21 C 1.52995 * 109.47032 * 154.99997 * 17 16 14 22 22 C 1.52993 * 109.47160 * 294.99884 * 21 17 16 23 23 C 1.50701 * 109.47595 * 180.02562 * 22 21 17 24 24 C 1.38236 * 120.00021 * 269.72890 * 23 22 21 25 25 C 1.38233 * 119.99790 * 179.75981 * 24 23 22 26 26 C 1.38230 * 120.00370 * 0.50636 * 25 24 23 27 27 C 1.38237 * 119.99771 * 359.74747 * 26 25 24 28 28 C 1.38230 * 120.00050 * 359.97438 * 27 26 25 29 29 C 1.39028 * 119.95175 * 359.41658 * 13 12 11 30 30 H 0.96997 * 119.99784 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.97859 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.79771 * 180.02562 * 11 10 9 33 33 H 1.07999 * 119.81858 * 180.30344 * 12 11 10 34 34 H 0.96992 * 120.00139 * 0.02562 * 16 14 13 35 35 H 1.08998 * 109.47361 * 174.99912 * 19 17 16 36 36 H 1.09008 * 109.46960 * 55.00116 * 19 17 16 37 37 H 0.96694 * 114.00480 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.47126 * 54.99872 * 21 17 16 39 39 H 1.09000 * 109.47320 * 174.99654 * 21 17 16 40 40 H 1.09001 * 109.47091 * 300.00009 * 22 21 17 41 41 H 1.09000 * 109.47400 * 60.00202 * 22 21 17 42 42 H 1.07998 * 120.00066 * 359.97438 * 24 23 22 43 43 H 1.08002 * 119.99844 * 180.22726 * 25 24 23 44 44 H 1.08005 * 120.00568 * 179.72560 * 26 25 24 45 45 H 1.07999 * 120.00011 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.00262 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.20480 * 180.25016 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3520 -2.4070 -0.3771 10 6 1.8262 -3.6500 0.0836 11 6 1.1857 -4.8120 -0.2852 12 6 0.0705 -4.7677 -1.1032 13 6 -0.4116 -3.5425 -1.5754 14 6 -1.6001 -3.5042 -2.4547 15 8 -2.0217 -2.4390 -2.8608 16 7 -2.2157 -4.6507 -2.8059 17 6 -3.3927 -4.6128 -3.6775 18 1 -3.2820 -3.8065 -4.4026 19 6 -4.6452 -4.3708 -2.8327 20 8 -4.8551 -5.4842 -1.9621 21 6 -3.5246 -5.9470 -4.4145 22 6 -2.3311 -6.1309 -5.3538 23 6 -2.4613 -7.4449 -6.0803 24 6 -1.9100 -8.5913 -5.5394 25 6 -2.0337 -9.7974 -6.2034 26 6 -2.6997 -9.8552 -7.4133 27 6 -3.2465 -8.7078 -7.9568 28 6 -3.1277 -7.5027 -7.2901 29 6 0.2237 -2.3603 -1.2128 30 1 -0.4850 0.8400 0.0004 31 1 2.6929 -3.6923 0.7267 32 1 1.5526 -5.7633 0.0709 33 1 -0.4274 -5.6844 -1.3825 34 1 -1.8795 -5.5007 -2.4815 35 1 -5.5084 -4.2540 -3.4880 36 1 -4.5141 -3.4655 -2.2397 37 1 -5.6342 -5.3993 -1.3957 38 1 -3.5460 -6.7615 -3.6904 39 1 -4.4476 -5.9521 -4.9943 40 1 -2.3098 -5.3164 -6.0779 41 1 -1.4082 -6.1259 -4.7740 42 1 -1.3856 -8.5454 -4.5964 43 1 -1.6062 -10.6938 -5.7790 44 1 -2.7925 -10.7968 -7.9343 45 1 -3.7664 -8.7528 -8.9023 46 1 -3.5546 -6.6062 -7.7149 47 1 -0.1475 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928263687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:29 Heat of formation + Delta-G solvation = -78.468328 kcal Electronic energy + Delta-G solvation = -28224.114569 eV Core-core repulsion = 24334.651405 eV Total energy + Delta-G solvation = -3889.463165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.11634 -40.12762 -39.05455 -38.09899 -36.24893 -35.60815 -34.28237 -32.38994 -31.71547 -31.31024 -30.87690 -28.74331 -27.18787 -25.15992 -24.39029 -23.40535 -22.83764 -21.96255 -21.57433 -21.20735 -19.52824 -18.42397 -17.93497 -17.59058 -17.20246 -16.85186 -16.44235 -16.23998 -16.12305 -15.85188 -15.62809 -15.08690 -14.98050 -14.82186 -14.47344 -14.29962 -14.25731 -14.19173 -13.99979 -13.59129 -13.43877 -13.23726 -12.95071 -12.80775 -12.53804 -12.45343 -12.40273 -12.20440 -12.06105 -11.88408 -11.67025 -11.63514 -11.50571 -11.06640 -11.00361 -10.69525 -10.11076 -9.77015 -9.53823 -9.45522 -9.37838 -8.66650 -6.37965 0.39678 0.49865 0.55178 1.01557 1.35744 1.47556 1.50339 2.11415 2.19142 2.27134 2.79163 2.92004 3.39446 3.59916 3.70571 3.95356 3.99799 4.03867 4.19312 4.24481 4.25987 4.36142 4.41481 4.43882 4.51896 4.59709 4.60846 4.69700 4.73364 4.80297 4.87597 4.92359 5.06716 5.09358 5.19183 5.20201 5.24369 5.31759 5.33632 5.51674 5.57759 5.63115 5.67745 5.79383 5.87375 5.93664 6.05583 6.18316 6.28987 6.52600 6.70920 6.85386 6.87893 6.94946 7.34356 8.29970 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002440 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.220759 B =11472.318639 C =12051.224297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.138 4.138 14 C 0.562 3.438 15 O -0.589 6.589 16 N -0.700 5.700 17 C 0.143 3.857 18 H 0.085 0.915 19 C 0.069 3.931 20 O -0.576 6.576 21 C -0.094 4.094 22 C -0.081 4.081 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.132 4.132 30 H 0.286 0.714 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.409 0.591 35 H 0.080 0.920 36 H 0.021 0.979 37 H 0.394 0.606 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.130 0.870 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -16.571 -11.449 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.237 4.237 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.141 4.141 14 C 0.352 3.648 15 O -0.471 6.471 16 N -0.352 5.352 17 C 0.039 3.961 18 H 0.103 0.897 19 C -0.010 4.010 20 O -0.384 6.384 21 C -0.132 4.132 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.148 4.148 29 C -0.152 4.152 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.148 0.852 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.421 -15.906 -12.026 22.054 hybrid contribution -0.039 1.083 0.698 1.289 sum -9.459 -14.823 -11.328 20.917 Atomic orbital electron populations 1.69888 1.09238 1.30645 1.35256 1.26864 0.95421 1.04960 0.91332 0.85244 0.78720 0.75456 0.80286 1.18504 1.19633 1.17607 1.19833 0.98595 0.92231 1.42036 0.89814 1.17956 0.91852 0.93905 0.89901 1.21398 1.03955 0.92770 1.05614 1.20912 0.95364 0.97690 0.97444 1.20819 1.00400 0.95115 1.05343 1.19802 0.97094 0.95383 1.01825 1.18690 0.83027 0.83691 0.79390 1.90655 1.67700 1.31609 1.57094 1.45751 1.30180 1.08415 1.50818 1.21228 0.83563 1.00023 0.91289 0.89655 1.22522 0.97607 0.88127 0.92788 1.86402 1.52704 1.42811 1.56441 1.21592 0.98875 0.95066 0.97682 1.20609 0.98960 0.94272 0.98038 1.19971 0.98111 0.95194 0.95518 1.21294 1.00352 0.92756 1.00579 1.21426 0.99215 0.98099 0.95744 1.21460 0.98333 0.99277 0.96184 1.21435 0.99807 0.92594 1.00565 1.21287 0.99642 0.98883 0.95017 1.21441 0.98306 0.96437 0.99033 0.90308 0.87397 0.84517 0.85045 0.75302 0.90189 0.96015 0.75697 0.90362 0.88965 0.91109 0.91576 0.85661 0.84553 0.84250 0.84286 0.85181 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.42 10.96 21.83 0.24 -46.18 16 2 C 0.03 1.54 5.14 85.26 0.44 1.98 16 3 Si 0.98 39.95 29.60 68.60 2.03 41.98 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.50 -27.40 9.05 23.47 0.21 -27.19 16 8 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 10 C -0.22 -10.33 9.78 22.77 0.22 -10.11 16 11 C -0.10 -3.89 10.01 22.18 0.22 -3.67 16 12 C -0.20 -7.94 9.55 22.70 0.22 -7.72 16 13 C -0.14 -6.61 5.87 -20.14 -0.12 -6.73 16 14 C 0.56 24.74 7.74 86.80 0.67 25.42 16 15 O -0.59 -30.21 16.00 -3.84 -0.06 -30.27 16 16 N -0.70 -22.45 4.43 -445.36 -1.97 -24.42 16 17 C 0.14 3.78 2.37 44.99 0.11 3.89 16 18 H 0.09 2.50 7.58 -2.39 -0.02 2.48 16 19 C 0.07 1.68 6.85 71.98 0.49 2.18 16 20 O -0.58 -12.81 12.83 -148.98 -1.91 -14.72 16 21 C -0.09 -1.88 4.45 30.59 0.14 -1.74 16 22 C -0.08 -1.67 5.23 29.85 0.16 -1.52 16 23 C -0.09 -1.73 5.13 -19.86 -0.10 -1.83 16 24 C -0.13 -2.51 9.70 22.27 0.22 -2.30 16 25 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 26 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 27 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 28 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 29 C -0.13 -7.40 8.24 23.01 0.19 -7.21 16 30 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 31 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.13 4.14 6.38 -2.91 -0.02 4.12 16 34 H 0.41 11.52 6.62 -92.71 -0.61 10.91 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.39 5.51 9.12 -74.06 -0.68 4.84 16 38 H 0.08 1.61 7.73 -2.39 -0.02 1.59 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 41 H 0.07 1.51 7.69 -2.39 -0.02 1.49 16 42 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 46 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.10 6.20 5.74 -2.91 -0.02 6.19 16 Total: -1.00 -71.74 395.61 1.86 -69.87 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -0.29 Total: 44.27 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.83 Total: -40.53 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.73 Total: -70.60 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.97 Total: -44.99 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -71.74 1.86 -69.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928263687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.593 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds