Wall clock time and date at job start Tue Mar 31 2020 22:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00211 * 2 1 4 4 O 1.20825 * 119.99729 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00362 * 180.02562 * 3 2 1 6 6 C 1.52988 * 109.47266 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47043 * 173.66851 * 6 5 3 8 8 C 1.36938 * 119.99646 * 278.73665 * 7 6 5 9 9 H 1.07996 * 120.00460 * 347.46679 * 8 7 6 10 10 C 1.38815 * 119.99970 * 167.47534 * 8 7 6 11 11 N 1.31622 * 119.99869 * 1.18880 * 10 8 7 12 12 Si 1.86799 * 120.00217 * 181.18747 * 10 8 7 13 13 H 1.48497 * 109.46987 * 5.00299 * 12 10 8 14 14 H 1.48506 * 109.46944 * 124.99985 * 12 10 8 15 15 H 1.48493 * 109.47282 * 244.99974 * 12 10 8 16 16 C 1.46495 * 120.00084 * 98.73472 * 7 6 5 17 17 C 1.52995 * 109.47247 * 264.86817 * 16 7 6 18 18 H 1.08998 * 109.49384 * 317.58704 * 17 16 7 19 19 C 1.53098 * 109.48168 * 197.55950 * 17 16 7 20 20 C 1.53168 * 109.16378 * 297.62785 * 19 17 16 21 21 C 1.53177 * 109.03950 * 303.01892 * 20 19 17 22 22 C 1.53096 * 109.16179 * 56.98104 * 21 20 19 23 23 H 1.08999 * 109.48079 * 62.38646 * 22 21 20 24 24 C 1.52996 * 109.48003 * 182.41398 * 22 21 20 25 25 F 1.39905 * 109.47502 * 55.92099 * 24 22 21 26 26 F 1.39907 * 109.47369 * 295.91924 * 24 22 21 27 27 F 1.39907 * 109.47157 * 175.91951 * 24 22 21 28 28 O 1.42905 * 109.41320 * 302.39035 * 22 21 20 29 29 H 1.08999 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46784 * 300.00176 * 1 2 3 31 31 H 1.09004 * 109.47008 * 59.99994 * 1 2 3 32 32 H 1.09000 * 109.47066 * 59.99424 * 5 3 2 33 33 H 1.09004 * 109.46604 * 300.00121 * 5 3 2 34 34 H 1.09003 * 109.47290 * 53.66968 * 6 5 3 35 35 H 1.09003 * 109.47470 * 293.66477 * 6 5 3 36 36 H 0.96999 * 119.99732 * 184.97337 * 11 10 8 37 37 H 1.09010 * 109.46937 * 144.87012 * 16 7 6 38 38 H 1.08999 * 109.47149 * 24.87511 * 16 7 6 39 39 H 1.08999 * 109.52021 * 177.71830 * 19 17 16 40 40 H 1.09007 * 109.57222 * 57.56426 * 19 17 16 41 41 H 1.09003 * 109.54424 * 183.15441 * 20 19 17 42 42 H 1.08999 * 109.54832 * 62.88468 * 20 19 17 43 43 H 1.09008 * 109.52118 * 297.07776 * 21 20 19 44 44 H 1.08997 * 109.57841 * 176.91900 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4552 2.8210 0.1507 8 6 6.0207 2.7151 1.3933 9 1 5.4010 2.7769 2.2757 10 6 7.3905 2.5286 1.5189 11 7 8.1489 2.4769 0.4444 12 14 8.1575 2.3509 3.2129 13 1 7.0862 2.3227 4.2408 14 1 8.9354 1.0874 3.2739 15 1 9.0606 3.5011 3.4705 16 6 6.3051 3.0133 -1.0269 17 6 6.8003 1.6545 -1.5259 18 1 7.0943 1.0397 -0.6752 19 6 8.0044 1.8575 -2.4494 20 6 7.5689 2.6711 -3.6719 21 6 6.4161 1.9441 -4.3712 22 6 5.2734 1.7377 -3.3735 23 1 4.9005 2.7069 -3.0423 24 6 4.1420 0.9589 -4.0475 25 9 4.6422 -0.2454 -4.5542 26 9 3.6107 1.7203 -5.0941 27 9 3.1385 0.6896 -3.1106 28 8 5.7536 1.0012 -2.2469 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.5196 3.2632 0.8269 35 1 3.7073 3.2072 -0.9424 36 1 9.0940 2.2748 0.5271 37 1 7.1594 3.6360 -0.7607 38 1 5.7306 3.5021 -1.8138 39 1 8.3828 0.8879 -2.7730 40 1 8.7881 2.3944 -1.9149 41 1 8.4077 2.7716 -4.3607 42 1 7.2368 3.6591 -3.3531 43 1 6.7624 0.9761 -4.7337 44 1 6.0629 2.5424 -5.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931536349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:42 Heat of formation + Delta-G solvation = -258.225878 kcal Electronic energy + Delta-G solvation = -33298.135503 eV Core-core repulsion = 28415.878711 eV Total energy + Delta-G solvation = -4882.256791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.85008 -47.40020 -47.29036 -39.98649 -39.29330 -36.34390 -35.62974 -33.24275 -32.36579 -31.40905 -29.80507 -27.58551 -27.10145 -25.48668 -24.36390 -22.79642 -22.24507 -21.37643 -19.97028 -19.00704 -18.14601 -17.95490 -17.65302 -17.28505 -16.79577 -16.13238 -16.02547 -15.38476 -15.09457 -14.67259 -14.42457 -14.16003 -14.07602 -13.88337 -13.76379 -13.67222 -13.48539 -13.46622 -13.32478 -13.05082 -12.88561 -12.74115 -12.22918 -12.18508 -11.96967 -11.54631 -11.46284 -11.11595 -11.05511 -11.01403 -10.77422 -10.51429 -10.46845 -10.25192 -10.13519 -10.06226 -9.89390 -9.80451 -9.40118 -9.07824 -8.50597 -6.97396 -5.83880 -3.31737 2.71632 2.86661 3.17074 3.31781 3.39960 3.40654 3.81728 4.14884 4.28506 4.38321 4.93953 5.00771 5.15154 5.19200 5.26756 5.28736 5.32457 5.43372 5.47334 5.53407 5.66407 5.73021 5.89819 5.95431 6.02602 6.10837 6.21588 6.35795 6.41834 6.45858 6.54298 6.62711 6.76327 6.81489 6.96221 7.05669 7.40108 7.56004 7.70183 7.93327 8.21695 8.29218 9.12011 9.68799 10.12636 11.12815 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.006438 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.095501 B = 4348.257735 C = 6808.058598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.465 3.535 4 O -0.521 6.521 5 C -0.142 4.142 6 C 0.169 3.831 7 N -0.596 5.596 8 C -0.231 4.231 9 H 0.077 0.923 10 C -0.008 4.008 11 N -0.920 5.920 12 Si 0.912 3.088 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.151 3.849 17 C 0.099 3.901 18 H 0.140 0.860 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.148 4.148 22 C 0.045 3.955 23 H 0.098 0.902 24 C 0.458 3.542 25 F -0.180 7.180 26 F -0.185 7.185 27 F -0.177 7.177 28 O -0.375 6.375 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.112 0.888 38 H 0.008 0.992 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 -2.712 -8.356 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.410 6.410 5 C -0.182 4.182 6 C 0.041 3.959 7 N -0.316 5.316 8 C -0.360 4.360 9 H 0.095 0.905 10 C -0.202 4.202 11 N -0.571 5.571 12 Si 0.743 3.257 13 H -0.206 1.206 14 H -0.217 1.217 15 H -0.218 1.218 16 C 0.026 3.974 17 C 0.042 3.958 18 H 0.157 0.843 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.186 4.186 22 C -0.015 4.015 23 H 0.115 0.885 24 C 0.404 3.596 25 F -0.161 7.161 26 F -0.166 7.166 27 F -0.158 7.158 28 O -0.295 6.295 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.467 -2.534 -8.264 10.227 hybrid contribution 0.081 -0.246 0.601 0.654 sum -5.385 -2.779 -7.663 9.770 Atomic orbital electron populations 1.23142 0.77827 1.02939 1.02047 1.86592 1.22407 1.34683 1.84365 1.24582 0.92902 0.80697 0.70895 1.90590 1.67621 1.36401 1.46379 1.22576 0.84388 1.04724 1.06524 1.20593 0.84951 0.90705 0.99645 1.44210 0.99745 1.83345 1.04251 1.19506 0.91148 1.40938 0.84408 0.90548 1.24805 0.96328 1.01556 0.97547 1.70054 1.05763 1.55562 1.25690 0.86033 0.79036 0.77297 0.83312 1.20641 1.21699 1.21835 1.21658 0.94851 0.95153 0.85736 1.23785 0.82510 0.97962 0.91519 0.84276 1.22056 1.00581 0.99282 0.95337 1.21578 0.96615 0.99444 0.97840 1.22176 0.96319 1.02506 0.97621 1.22970 0.92230 0.95711 0.90594 0.88458 1.20546 0.83818 0.78351 0.76872 1.93157 1.87234 1.47825 1.87932 1.93153 1.87760 1.75951 1.59749 1.93191 1.63463 1.94183 1.64974 1.88020 1.56429 1.46042 1.38980 0.88765 0.92360 0.92348 0.86750 0.87911 0.93224 0.93684 0.93592 0.86995 0.97403 0.93335 0.88905 0.92024 0.91468 0.90444 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.50 16 2 O -0.36 -6.09 10.57 -39.25 -0.41 -6.50 16 3 C 0.47 8.64 7.96 36.01 0.29 8.93 16 4 O -0.52 -10.51 15.64 -18.75 -0.29 -10.80 16 5 C -0.14 -2.71 6.07 -27.89 -0.17 -2.88 16 6 C 0.17 3.44 5.11 -4.05 -0.02 3.42 16 7 N -0.60 -13.29 2.56 -173.24 -0.44 -13.73 16 8 C -0.23 -5.62 9.66 -15.06 -0.15 -5.77 16 9 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.20 5.19 -17.43 -0.09 -0.29 16 11 N -0.92 -21.87 6.38 55.49 0.35 -21.51 16 12 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 16 C 0.15 3.14 3.77 -4.05 -0.02 3.13 16 17 C 0.10 1.95 2.51 -26.68 -0.07 1.88 16 18 H 0.14 3.26 6.41 -51.93 -0.33 2.93 16 19 C -0.13 -2.30 5.40 -26.59 -0.14 -2.44 16 20 C -0.12 -1.68 5.74 -26.55 -0.15 -1.83 16 21 C -0.15 -2.06 5.18 -26.59 -0.14 -2.20 16 22 C 0.05 0.72 2.31 -26.68 -0.06 0.66 16 23 H 0.10 1.58 6.00 -51.93 -0.31 1.27 16 24 C 0.46 7.24 2.86 37.16 0.11 7.35 16 25 F -0.18 -2.88 16.59 2.25 0.04 -2.84 16 26 F -0.18 -2.70 17.01 2.25 0.04 -2.67 16 27 F -0.18 -3.05 15.96 2.25 0.04 -3.01 16 28 O -0.37 -7.01 8.23 -35.23 -0.29 -7.30 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.11 2.24 4.90 -51.93 -0.25 1.99 16 33 H 0.10 2.01 8.09 -51.93 -0.42 1.59 16 34 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 35 H 0.04 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.25 5.96 8.32 -40.82 -0.34 5.62 16 37 H 0.11 2.60 5.91 -51.92 -0.31 2.29 16 38 H 0.01 0.16 4.76 -51.93 -0.25 -0.09 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.71 7.15 -51.92 -0.37 1.33 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.98 7.05 -51.93 -0.37 0.61 16 43 H 0.08 1.08 7.64 -51.92 -0.40 0.68 16 44 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -25.43 354.48 -6.10 -31.52 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.89 Total: 4.96 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 0.46 Total: 11.47 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.09 Total: -35.24 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.00 Total: -24.60 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.11 Total: -8.52 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -25.43 -6.10 -31.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931536349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.705 kcal (2) G-P(sol) polarization free energy of solvation -25.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds