Wall clock time and date at job start Tue Mar 31 2020 22:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00211 * 2 1 4 4 O 1.20825 * 119.99729 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00362 * 180.02562 * 3 2 1 6 6 C 1.52988 * 109.47266 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47043 * 173.66851 * 6 5 3 8 8 C 1.36938 * 119.99646 * 278.73665 * 7 6 5 9 9 H 1.07996 * 120.00460 * 347.46679 * 8 7 6 10 10 C 1.38815 * 119.99970 * 167.47534 * 8 7 6 11 11 N 1.31622 * 119.99869 * 1.18880 * 10 8 7 12 12 Si 1.86799 * 120.00217 * 181.18747 * 10 8 7 13 13 H 1.48497 * 109.46987 * 5.00299 * 12 10 8 14 14 H 1.48506 * 109.46944 * 124.99985 * 12 10 8 15 15 H 1.48493 * 109.47282 * 244.99974 * 12 10 8 16 16 C 1.46495 * 120.00084 * 98.73472 * 7 6 5 17 17 C 1.52995 * 109.47247 * 264.86817 * 16 7 6 18 18 H 1.08998 * 109.49384 * 317.58704 * 17 16 7 19 19 C 1.53098 * 109.48168 * 197.55950 * 17 16 7 20 20 C 1.53168 * 109.16378 * 297.62785 * 19 17 16 21 21 C 1.53177 * 109.03950 * 303.01892 * 20 19 17 22 22 C 1.53096 * 109.16179 * 56.98104 * 21 20 19 23 23 H 1.08999 * 109.48079 * 62.38646 * 22 21 20 24 24 C 1.52996 * 109.48003 * 182.41398 * 22 21 20 25 25 F 1.39905 * 109.47502 * 55.92099 * 24 22 21 26 26 F 1.39907 * 109.47369 * 295.91924 * 24 22 21 27 27 F 1.39907 * 109.47157 * 175.91951 * 24 22 21 28 28 O 1.42905 * 109.41320 * 302.39035 * 22 21 20 29 29 H 1.08999 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46784 * 300.00176 * 1 2 3 31 31 H 1.09004 * 109.47008 * 59.99994 * 1 2 3 32 32 H 1.09000 * 109.47066 * 59.99424 * 5 3 2 33 33 H 1.09004 * 109.46604 * 300.00121 * 5 3 2 34 34 H 1.09003 * 109.47290 * 53.66968 * 6 5 3 35 35 H 1.09003 * 109.47470 * 293.66477 * 6 5 3 36 36 H 0.96999 * 119.99732 * 184.97337 * 11 10 8 37 37 H 1.09010 * 109.46937 * 144.87012 * 16 7 6 38 38 H 1.08999 * 109.47149 * 24.87511 * 16 7 6 39 39 H 1.08999 * 109.52021 * 177.71830 * 19 17 16 40 40 H 1.09007 * 109.57222 * 57.56426 * 19 17 16 41 41 H 1.09003 * 109.54424 * 183.15441 * 20 19 17 42 42 H 1.08999 * 109.54832 * 62.88468 * 20 19 17 43 43 H 1.09008 * 109.52118 * 297.07776 * 21 20 19 44 44 H 1.08997 * 109.57841 * 176.91900 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4552 2.8210 0.1507 8 6 6.0207 2.7151 1.3933 9 1 5.4010 2.7769 2.2757 10 6 7.3905 2.5286 1.5189 11 7 8.1489 2.4769 0.4444 12 14 8.1575 2.3509 3.2129 13 1 7.0862 2.3227 4.2408 14 1 8.9354 1.0874 3.2739 15 1 9.0606 3.5011 3.4705 16 6 6.3051 3.0133 -1.0269 17 6 6.8003 1.6545 -1.5259 18 1 7.0943 1.0397 -0.6752 19 6 8.0044 1.8575 -2.4494 20 6 7.5689 2.6711 -3.6719 21 6 6.4161 1.9441 -4.3712 22 6 5.2734 1.7377 -3.3735 23 1 4.9005 2.7069 -3.0423 24 6 4.1420 0.9589 -4.0475 25 9 4.6422 -0.2454 -4.5542 26 9 3.6107 1.7203 -5.0941 27 9 3.1385 0.6896 -3.1106 28 8 5.7536 1.0012 -2.2469 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9558 0.7808 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.5196 3.2632 0.8269 35 1 3.7073 3.2072 -0.9424 36 1 9.0940 2.2748 0.5271 37 1 7.1594 3.6360 -0.7607 38 1 5.7306 3.5021 -1.8138 39 1 8.3828 0.8879 -2.7730 40 1 8.7881 2.3944 -1.9149 41 1 8.4077 2.7716 -4.3607 42 1 7.2368 3.6591 -3.3531 43 1 6.7624 0.9761 -4.7337 44 1 6.0629 2.5424 -5.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931536349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:41 Heat of formation + Delta-G solvation = -269.654149 kcal Electronic energy + Delta-G solvation = -33298.631070 eV Core-core repulsion = 28415.878711 eV Total energy + Delta-G solvation = -4882.752358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.11230 -48.64047 -48.58283 -41.42834 -40.72075 -37.83778 -37.21078 -34.59677 -33.98291 -32.90164 -31.42705 -28.93707 -28.44796 -26.94220 -25.95646 -24.17199 -23.55704 -22.95763 -21.48358 -20.39620 -19.45571 -19.23863 -19.07295 -18.79156 -18.35472 -17.52624 -17.41598 -16.98736 -16.54197 -16.19048 -15.82151 -15.48675 -15.37014 -15.32694 -15.21144 -15.03907 -14.83144 -14.75651 -14.72810 -14.42755 -14.30275 -14.09080 -13.64142 -13.51589 -13.37578 -13.02827 -12.91356 -12.74825 -12.66485 -12.43982 -12.28389 -12.06462 -11.85465 -11.80925 -11.76771 -11.55792 -11.50485 -11.36243 -10.90148 -10.67404 -10.14051 -8.73194 -7.68092 -5.17025 1.23114 1.51657 1.57024 1.58709 1.62958 1.86312 2.49269 2.57558 2.88332 3.02224 3.36969 3.62651 3.67940 3.80566 3.92709 4.04787 4.18890 4.26099 4.29604 4.32375 4.34458 4.38907 4.45261 4.68369 4.72633 4.79201 4.81114 4.89014 4.97533 4.99801 5.07368 5.24205 5.27383 5.43753 5.45535 5.58129 5.65079 5.77653 5.99510 6.31027 6.58406 6.78694 7.28523 7.90143 8.30491 9.25139 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.006438 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.095501 B = 4348.257735 C = 6808.058598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.471 3.529 4 O -0.539 6.539 5 C -0.131 4.131 6 C 0.175 3.825 7 N -0.607 5.607 8 C -0.248 4.248 9 H 0.068 0.932 10 C -0.040 4.040 11 N -0.919 5.919 12 Si 0.961 3.039 13 H -0.282 1.282 14 H -0.295 1.295 15 H -0.296 1.296 16 C 0.159 3.841 17 C 0.113 3.887 18 H 0.100 0.900 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.142 4.142 22 C 0.041 3.959 23 H 0.096 0.904 24 C 0.463 3.537 25 F -0.180 7.180 26 F -0.174 7.174 27 F -0.187 7.187 28 O -0.388 6.388 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.249 0.751 37 H 0.087 0.913 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 -3.035 -9.740 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.316 3.684 4 O -0.430 6.430 5 C -0.171 4.171 6 C 0.047 3.953 7 N -0.327 5.327 8 C -0.378 4.378 9 H 0.086 0.914 10 C -0.234 4.234 11 N -0.569 5.569 12 Si 0.792 3.208 13 H -0.207 1.207 14 H -0.222 1.222 15 H -0.223 1.223 16 C 0.034 3.966 17 C 0.055 3.945 18 H 0.118 0.882 19 C -0.167 4.167 20 C -0.148 4.148 21 C -0.180 4.180 22 C -0.019 4.019 23 H 0.113 0.887 24 C 0.408 3.592 25 F -0.162 7.162 26 F -0.156 7.156 27 F -0.168 7.168 28 O -0.308 6.308 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.004 -2.871 -9.664 11.734 hybrid contribution 0.146 -0.182 1.007 1.034 sum -5.858 -3.053 -8.657 10.889 Atomic orbital electron populations 1.23530 0.75201 1.05541 1.02398 1.86552 1.24929 1.33323 1.83780 1.24258 0.92541 0.81033 0.70552 1.90580 1.67935 1.37091 1.47381 1.22298 0.85351 1.03523 1.05967 1.20501 0.83989 0.91450 0.99325 1.44306 1.00549 1.83734 1.04138 1.19566 0.91403 1.41717 0.85072 0.91411 1.25283 0.96679 1.01778 0.99643 1.70202 1.05431 1.55107 1.26116 0.85285 0.77984 0.76494 0.81017 1.20708 1.22173 1.22342 1.21508 0.93942 0.95558 0.85563 1.23238 0.83710 0.96186 0.91319 0.88246 1.21926 0.98931 0.99773 0.96026 1.21537 0.97722 0.98628 0.96950 1.22183 0.95084 1.03168 0.97570 1.23135 0.93174 0.95236 0.90378 0.88652 1.20449 0.83459 0.78338 0.76908 1.93159 1.87212 1.47898 1.87889 1.93174 1.87593 1.75654 1.59172 1.93173 1.63903 1.94272 1.65489 1.87958 1.56322 1.46422 1.40088 0.85112 0.91929 0.92138 0.87054 0.88725 0.94362 0.93176 0.93992 0.89472 0.95959 0.93109 0.90452 0.89438 0.91671 0.90089 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.37 -11.89 10.57 -51.38 -0.54 -12.44 16 3 C 0.47 17.28 7.96 71.24 0.57 17.84 16 4 O -0.54 -21.45 15.64 21.97 0.34 -21.11 16 5 C -0.13 -5.04 6.07 29.84 0.18 -4.86 16 6 C 0.17 7.19 5.11 86.37 0.44 7.63 16 7 N -0.61 -27.52 2.56 -702.02 -1.80 -29.32 16 8 C -0.25 -12.32 9.66 84.03 0.81 -11.51 16 9 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 10 C -0.04 -1.96 5.19 84.86 0.44 -1.52 16 11 N -0.92 -44.42 6.38 21.65 0.14 -44.28 16 12 Si 0.96 41.86 29.56 68.60 2.03 43.89 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 16 C 0.16 6.66 3.77 86.38 0.33 6.99 16 17 C 0.11 4.46 2.51 30.63 0.08 4.54 16 18 H 0.10 4.79 6.41 -2.39 -0.02 4.78 16 19 C -0.13 -4.30 5.40 30.68 0.17 -4.13 16 20 C -0.11 -2.92 5.74 30.71 0.18 -2.74 16 21 C -0.14 -3.55 5.18 30.69 0.16 -3.39 16 22 C 0.04 1.23 2.31 30.62 0.07 1.30 16 23 H 0.10 2.95 6.00 -2.39 -0.01 2.94 16 24 C 0.46 13.75 2.86 71.98 0.21 13.96 16 25 F -0.18 -5.41 16.59 44.97 0.75 -4.67 16 26 F -0.17 -4.67 17.01 44.97 0.76 -3.91 16 27 F -0.19 -6.21 15.96 44.97 0.72 -5.50 16 28 O -0.39 -14.29 8.23 -148.98 -1.23 -15.51 16 29 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 31 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 32 H 0.11 4.38 4.90 -2.39 -0.01 4.36 16 33 H 0.09 3.78 8.09 -2.38 -0.02 3.76 16 34 H 0.04 1.64 7.88 -2.39 -0.02 1.62 16 35 H 0.05 1.98 7.75 -2.39 -0.02 1.96 16 36 H 0.25 11.92 8.32 -92.71 -0.77 11.15 16 37 H 0.09 4.11 5.91 -2.38 -0.01 4.09 16 38 H 0.02 0.86 4.76 -2.39 -0.01 0.85 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 2.84 7.15 -2.38 -0.02 2.82 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.76 7.05 -2.39 -0.02 1.74 16 43 H 0.08 2.01 7.64 -2.38 -0.02 1.99 16 44 H 0.10 1.99 7.98 -2.39 -0.02 1.97 16 Total: -1.00 -54.37 354.48 7.02 -47.34 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.04 Total: 19.60 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 4.82 Total: 25.90 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.66 Total: -73.60 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -1.43 Total: -49.06 kcal Atomic # 9 Polarization: -16.30 SS G_CDS: 2.23 Total: -14.07 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -54.37 7.02 -47.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931536349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.311 kcal (2) G-P(sol) polarization free energy of solvation -54.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds