Wall clock time and date at job start Tue Mar 31 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 120.00128 * 2 1 4 4 H 1.48501 * 109.46859 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.46977 * 119.99662 * 3 2 1 6 6 H 1.48500 * 109.46951 * 239.99829 * 3 2 1 7 7 C 1.39929 * 119.99650 * 180.27104 * 2 1 3 8 8 H 1.08008 * 120.00005 * 149.95020 * 7 2 1 9 9 C 1.41399 * 120.00448 * 329.94593 * 7 2 1 10 10 C 1.40780 * 120.21287 * 333.43448 * 9 7 2 11 11 C 1.37636 * 119.88931 * 179.76426 * 10 9 7 12 12 C 1.38530 * 120.31981 * 0.50963 * 11 10 9 13 13 C 1.39247 * 120.42884 * 359.75085 * 12 11 10 14 14 N 1.39956 * 119.94934 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00216 * 213.64982 * 14 13 12 16 16 O 1.21587 * 120.00001 * 4.72615 * 15 14 13 17 17 N 1.34777 * 120.00129 * 184.72177 * 15 14 13 18 18 C 1.46499 * 119.99952 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.28748 * 324.33378 * 18 17 15 20 20 C 1.54257 * 110.32298 * 86.45634 * 18 17 15 21 21 C 1.54383 * 105.06012 * 118.89687 * 20 18 17 22 22 N 1.48549 * 104.59291 * 23.85326 * 21 20 18 23 23 C 1.46907 * 110.99893 * 200.95872 * 22 21 20 24 24 C 1.52995 * 109.47313 * 290.12659 * 23 22 21 25 25 F 1.39902 * 109.47112 * 300.00170 * 24 23 22 26 26 F 1.39906 * 109.46840 * 59.99892 * 24 23 22 27 27 C 1.48565 * 104.22589 * 320.51857 * 22 21 20 28 28 C 1.38270 * 120.10493 * 359.97438 * 13 12 11 29 29 H 0.97000 * 120.00427 * 173.38540 * 1 2 3 30 30 H 1.08007 * 120.04877 * 0.02656 * 10 9 7 31 31 H 1.07999 * 119.84137 * 180.25877 * 11 10 9 32 32 H 1.08004 * 119.78927 * 179.76044 * 12 11 10 33 33 H 0.97009 * 119.99935 * 33.64657 * 14 13 12 34 34 H 0.96994 * 119.99923 * 0.02562 * 17 15 14 35 35 H 1.09000 * 110.32601 * 237.79594 * 20 18 17 36 36 H 1.09002 * 110.32637 * 0.02562 * 20 18 17 37 37 H 1.08998 * 110.41054 * 142.63573 * 21 20 18 38 38 H 1.09003 * 110.40823 * 265.07232 * 21 20 18 39 39 H 1.09001 * 109.46558 * 50.12990 * 23 22 21 40 40 H 1.09001 * 109.47057 * 170.12341 * 23 22 21 41 41 H 1.08994 * 109.47055 * 180.02562 * 24 23 22 42 42 H 1.08998 * 110.40941 * 280.70461 * 27 22 21 43 43 H 1.09000 * 110.41377 * 158.26570 * 27 22 21 44 44 H 1.08002 * 120.16132 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0078 -1.2118 -0.0057 8 1 2.9790 -1.2726 -0.4744 9 6 1.4434 -2.3570 0.6021 10 6 0.5177 -2.2174 1.6535 11 6 -0.0313 -3.3365 2.2371 12 6 0.3306 -4.6010 1.8021 13 6 1.2492 -4.7546 0.7669 14 7 1.6081 -6.0368 0.3358 15 6 2.8600 -6.2745 -0.1030 16 8 3.7013 -5.3986 -0.0442 17 7 3.1795 -7.4830 -0.6070 18 6 4.5402 -7.7411 -1.0844 19 1 4.9535 -6.8463 -1.5499 20 6 5.4387 -8.2021 0.0816 21 6 5.9096 -9.6191 -0.3109 22 7 5.8019 -9.6524 -1.7921 23 6 5.7306 -11.0349 -2.2838 24 6 7.0854 -11.7173 -2.0855 25 9 8.0676 -11.0195 -2.7966 26 9 7.4102 -11.7225 -0.7246 27 6 4.5437 -8.9181 -2.0833 28 6 1.8073 -3.6423 0.1642 29 1 -0.4851 -0.8344 -0.0968 30 1 0.2355 -1.2336 1.9986 31 1 -0.7446 -3.2284 3.0408 32 1 -0.1025 -5.4734 2.2688 33 1 0.9557 -6.7546 0.3528 34 1 2.5082 -8.1816 -0.6542 35 1 6.2939 -7.5347 0.1874 36 1 4.8672 -8.2369 1.0091 37 1 6.9428 -9.7757 -0.0011 38 1 5.2599 -10.3725 0.1346 39 1 4.9653 -11.5784 -1.7297 40 1 5.4775 -11.0308 -3.3440 41 1 7.0326 -12.7429 -2.4507 42 1 3.6803 -9.5618 -1.9153 43 1 4.5486 -8.5470 -3.1082 44 1 2.5202 -3.7604 -0.6385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931687669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:50 Heat of formation + Delta-G solvation = -103.520816 kcal Electronic energy + Delta-G solvation = -28661.783131 eV Core-core repulsion = 24249.296830 eV Total energy + Delta-G solvation = -4412.486301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.25838 -47.25533 -40.31685 -39.05606 -37.39271 -34.89160 -34.38861 -33.12471 -31.86984 -29.66563 -29.18619 -28.49867 -27.20334 -25.03062 -23.38276 -22.32111 -21.65273 -21.09405 -20.59139 -20.04551 -18.28563 -18.02095 -17.91695 -17.68622 -17.01135 -16.14158 -15.99466 -15.51785 -14.96670 -14.66819 -14.63238 -14.40115 -14.15380 -14.06131 -13.88837 -13.60341 -13.51049 -13.25941 -13.09927 -12.73011 -12.71235 -12.26606 -12.03858 -11.93652 -11.78304 -11.62501 -11.44845 -11.14632 -11.02723 -10.91868 -10.51245 -10.38032 -10.30423 -9.68987 -9.53277 -9.12281 -9.07733 -8.97574 -8.85890 -7.60194 -7.20136 -6.95648 -4.35873 2.62503 2.82164 2.89813 3.21757 3.30747 3.32965 3.42984 3.48945 3.63660 3.79785 4.04825 4.08345 4.19623 4.41203 4.51004 4.59587 4.64901 4.80865 4.88604 4.90451 5.02264 5.13872 5.29611 5.53565 5.55954 5.73440 5.85200 5.99133 6.13347 6.18178 6.34646 6.36298 6.58846 6.67140 6.72649 6.92359 7.00054 7.23661 7.54120 7.75087 7.77042 7.86759 7.95046 8.25220 8.30616 8.42467 8.85618 8.91231 8.99907 10.08878 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.002062 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.108809 B =13574.192114 C =14421.991057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.044 3.956 3 Si 1.062 2.938 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.109 3.891 10 C -0.229 4.229 11 C -0.070 4.070 12 C -0.279 4.279 13 C 0.181 3.819 14 N -0.682 5.682 15 C 0.699 3.301 16 O -0.561 6.561 17 N -0.746 5.746 18 C 0.163 3.837 19 H 0.103 0.897 20 C -0.136 4.136 21 C 0.028 3.972 22 N -0.503 5.503 23 C -0.009 4.009 24 C 0.270 3.730 25 F -0.196 7.196 26 F -0.205 7.205 27 C 0.030 3.970 28 C -0.215 4.215 29 H 0.297 0.703 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.394 0.606 34 H 0.390 0.610 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -23.728 -4.751 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.179 4.179 3 Si 0.885 3.115 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.095 0.905 9 C 0.106 3.894 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.301 4.301 13 C 0.089 3.911 14 N -0.328 5.328 15 C 0.399 3.601 16 O -0.435 6.435 17 N -0.403 5.403 18 C 0.057 3.943 19 H 0.121 0.879 20 C -0.176 4.176 21 C -0.099 4.099 22 N -0.227 5.227 23 C -0.139 4.139 24 C 0.216 3.784 25 F -0.177 7.177 26 F -0.186 7.186 27 C -0.098 4.098 28 C -0.236 4.236 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.227 0.773 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.040 -21.020 -4.921 23.037 hybrid contribution -1.156 -2.991 0.400 3.232 sum 6.884 -24.012 -4.521 25.385 Atomic orbital electron populations 1.70452 1.08308 1.34067 1.28561 1.26990 0.95554 1.04259 0.91089 0.83700 0.75771 0.73863 0.78142 1.19962 1.19924 1.20119 1.20515 1.05738 0.94696 1.34164 0.90542 1.17525 0.89893 0.92006 0.89990 1.21092 1.05855 0.97009 1.00926 1.20352 0.98140 0.92429 0.98027 1.19929 1.09842 0.96359 1.03962 1.17261 0.97566 0.81736 0.94546 1.42606 1.10956 1.11764 1.67482 1.15952 0.82935 0.82498 0.78692 1.90995 1.48283 1.44051 1.60202 1.45244 1.12699 1.13663 1.68694 1.21399 0.81350 0.98381 0.93178 0.87898 1.22823 1.00383 0.95664 0.98724 1.23410 1.02621 0.97066 0.86844 1.65414 1.33721 1.11214 1.12385 1.23425 0.95404 0.91177 1.03915 1.21899 0.85942 0.96428 0.74118 1.93018 1.64824 1.81981 1.77874 1.92973 1.93851 1.97498 1.34325 1.23356 0.90785 0.94924 1.00713 1.20975 1.07814 0.90873 1.03983 0.88982 0.87985 0.88939 0.89257 0.77288 0.77604 0.89961 0.90508 0.88871 0.93513 0.91447 0.87492 0.87011 0.92964 0.88717 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.35 12.42 55.55 0.69 -20.66 16 2 C 0.04 1.14 4.80 -17.35 -0.08 1.06 16 3 Si 1.06 22.37 30.02 -169.99 -5.10 17.27 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.52 -14.63 8.93 -37.75 -0.34 -14.97 16 8 H 0.08 2.15 8.00 -52.48 -0.42 1.73 16 9 C 0.11 3.04 5.23 -106.85 -0.56 2.48 16 10 C -0.23 -6.00 8.16 -38.84 -0.32 -6.32 16 11 C -0.07 -1.64 10.02 -39.69 -0.40 -2.04 16 12 C -0.28 -6.15 9.97 -39.10 -0.39 -6.54 16 13 C 0.18 4.13 6.27 -83.76 -0.53 3.61 16 14 N -0.68 -12.07 5.35 -14.27 -0.08 -12.14 16 15 C 0.70 12.48 8.30 -86.92 -0.72 11.76 16 16 O -0.56 -12.85 13.72 5.29 0.07 -12.78 16 17 N -0.75 -9.07 5.05 -57.33 -0.29 -9.36 16 18 C 0.16 1.88 3.36 -66.55 -0.22 1.66 16 19 H 0.10 1.47 7.64 -51.93 -0.40 1.07 16 20 C -0.14 -1.54 6.78 -25.35 -0.17 -1.71 16 21 C 0.03 0.26 5.20 -2.19 -0.01 0.25 16 22 N -0.50 -4.35 5.29 -229.98 -1.22 -5.57 16 23 C -0.01 -0.05 5.20 -3.82 -0.02 -0.07 16 24 C 0.27 1.64 5.58 37.15 0.21 1.85 16 25 F -0.20 -1.82 17.26 2.25 0.04 -1.78 16 26 F -0.21 -1.72 14.55 2.25 0.03 -1.69 16 27 C 0.03 0.25 6.19 -2.18 -0.01 0.24 16 28 C -0.21 -5.66 8.39 -38.69 -0.32 -5.99 16 29 H 0.30 8.21 7.17 -40.82 -0.29 7.92 16 30 H 0.10 2.74 6.76 -52.48 -0.35 2.38 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.39 5.27 8.83 -40.82 -0.36 4.91 16 34 H 0.39 3.39 8.36 -40.82 -0.34 3.05 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.92 7.95 -51.93 -0.41 0.50 16 37 H 0.09 0.93 6.73 -51.93 -0.35 0.58 16 38 H 0.05 0.38 7.82 -51.93 -0.41 -0.02 16 39 H 0.07 0.28 7.88 -51.93 -0.41 -0.13 16 40 H 0.11 0.44 8.13 -51.93 -0.42 0.02 16 41 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.05 0.34 7.59 -51.93 -0.39 -0.06 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.11 2.99 6.40 -52.49 -0.34 2.66 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -33.44 367.16 -10.01 -43.45 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.81 Total: 12.47 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -3.89 Total: -14.74 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.89 Total: -47.73 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.10 Total: 17.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.44 -10.01 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.071 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds