Wall clock time and date at job start Tue Mar 31 2020 23:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 120.00128 * 2 1 4 4 H 1.48501 * 109.46859 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.46977 * 119.99662 * 3 2 1 6 6 H 1.48500 * 109.46951 * 239.99829 * 3 2 1 7 7 C 1.39929 * 119.99650 * 180.27104 * 2 1 3 8 8 H 1.08008 * 120.00005 * 149.95020 * 7 2 1 9 9 C 1.41399 * 120.00448 * 329.94593 * 7 2 1 10 10 C 1.40780 * 120.21287 * 333.43448 * 9 7 2 11 11 C 1.37636 * 119.88931 * 179.76426 * 10 9 7 12 12 C 1.38530 * 120.31981 * 0.50963 * 11 10 9 13 13 C 1.39247 * 120.42884 * 359.75085 * 12 11 10 14 14 N 1.39956 * 119.94934 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00216 * 213.64982 * 14 13 12 16 16 O 1.21587 * 120.00001 * 4.72615 * 15 14 13 17 17 N 1.34777 * 120.00129 * 184.72177 * 15 14 13 18 18 C 1.46499 * 119.99952 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.28748 * 324.33378 * 18 17 15 20 20 C 1.54257 * 110.32298 * 86.45634 * 18 17 15 21 21 C 1.54383 * 105.06012 * 118.89687 * 20 18 17 22 22 N 1.48549 * 104.59291 * 23.85326 * 21 20 18 23 23 C 1.46907 * 110.99893 * 200.95872 * 22 21 20 24 24 C 1.52995 * 109.47313 * 290.12659 * 23 22 21 25 25 F 1.39902 * 109.47112 * 300.00170 * 24 23 22 26 26 F 1.39906 * 109.46840 * 59.99892 * 24 23 22 27 27 C 1.48565 * 104.22589 * 320.51857 * 22 21 20 28 28 C 1.38270 * 120.10493 * 359.97438 * 13 12 11 29 29 H 0.97000 * 120.00427 * 173.38540 * 1 2 3 30 30 H 1.08007 * 120.04877 * 0.02656 * 10 9 7 31 31 H 1.07999 * 119.84137 * 180.25877 * 11 10 9 32 32 H 1.08004 * 119.78927 * 179.76044 * 12 11 10 33 33 H 0.97009 * 119.99935 * 33.64657 * 14 13 12 34 34 H 0.96994 * 119.99923 * 0.02562 * 17 15 14 35 35 H 1.09000 * 110.32601 * 237.79594 * 20 18 17 36 36 H 1.09002 * 110.32637 * 0.02562 * 20 18 17 37 37 H 1.08998 * 110.41054 * 142.63573 * 21 20 18 38 38 H 1.09003 * 110.40823 * 265.07232 * 21 20 18 39 39 H 1.09001 * 109.46558 * 50.12990 * 23 22 21 40 40 H 1.09001 * 109.47057 * 170.12341 * 23 22 21 41 41 H 1.08994 * 109.47055 * 180.02562 * 24 23 22 42 42 H 1.08998 * 110.40941 * 280.70461 * 27 22 21 43 43 H 1.09000 * 110.41377 * 158.26570 * 27 22 21 44 44 H 1.08002 * 120.16132 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0078 -1.2118 -0.0057 8 1 2.9790 -1.2726 -0.4744 9 6 1.4434 -2.3570 0.6021 10 6 0.5177 -2.2174 1.6535 11 6 -0.0313 -3.3365 2.2371 12 6 0.3306 -4.6010 1.8021 13 6 1.2492 -4.7546 0.7669 14 7 1.6081 -6.0368 0.3358 15 6 2.8600 -6.2745 -0.1030 16 8 3.7013 -5.3986 -0.0442 17 7 3.1795 -7.4830 -0.6070 18 6 4.5402 -7.7411 -1.0844 19 1 4.9535 -6.8463 -1.5499 20 6 5.4387 -8.2021 0.0816 21 6 5.9096 -9.6191 -0.3109 22 7 5.8019 -9.6524 -1.7921 23 6 5.7306 -11.0349 -2.2838 24 6 7.0854 -11.7173 -2.0855 25 9 8.0676 -11.0195 -2.7966 26 9 7.4102 -11.7225 -0.7246 27 6 4.5437 -8.9181 -2.0833 28 6 1.8073 -3.6423 0.1642 29 1 -0.4851 -0.8344 -0.0968 30 1 0.2355 -1.2336 1.9986 31 1 -0.7446 -3.2284 3.0408 32 1 -0.1025 -5.4734 2.2688 33 1 0.9557 -6.7546 0.3528 34 1 2.5082 -8.1816 -0.6542 35 1 6.2939 -7.5347 0.1874 36 1 4.8672 -8.2369 1.0091 37 1 6.9428 -9.7757 -0.0011 38 1 5.2599 -10.3725 0.1346 39 1 4.9653 -11.5784 -1.7297 40 1 5.4775 -11.0308 -3.3440 41 1 7.0326 -12.7429 -2.4507 42 1 3.6803 -9.5618 -1.9153 43 1 4.5486 -8.5470 -3.1082 44 1 2.5202 -3.7604 -0.6385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931687669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:49 Heat of formation + Delta-G solvation = -127.581347 kcal Electronic energy + Delta-G solvation = -28662.826474 eV Core-core repulsion = 24249.296830 eV Total energy + Delta-G solvation = -4413.529644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.78821 -47.81668 -41.66990 -40.12985 -39.10183 -36.47017 -35.71046 -34.89370 -32.75748 -31.63242 -30.18056 -29.68436 -28.30596 -27.04177 -24.03022 -23.77254 -22.93119 -22.34868 -21.94923 -21.39872 -20.05323 -19.42135 -18.52042 -18.23043 -18.01732 -17.35745 -16.97814 -16.69223 -16.44171 -16.21834 -15.92594 -15.62451 -15.48099 -15.29435 -14.84128 -14.76930 -14.58024 -14.18724 -14.07048 -13.95549 -13.79643 -13.73003 -13.45732 -13.30344 -12.90030 -12.77543 -12.59929 -12.43053 -12.34023 -12.21066 -11.95627 -11.87156 -11.57471 -11.56322 -11.25883 -10.91483 -10.83069 -10.20778 -9.64127 -9.60452 -9.23733 -8.79998 -6.46259 0.80152 0.93958 1.48393 1.53571 1.61717 1.79513 2.10784 2.31778 2.65356 2.72644 3.01916 3.27020 3.39851 3.43050 3.55227 3.66772 3.77403 3.96195 4.13264 4.18684 4.28529 4.34909 4.48909 4.56376 4.57526 4.58792 4.75675 4.79510 4.85760 4.96603 5.00373 5.05067 5.06591 5.09139 5.31216 5.54477 5.60973 5.68935 5.78196 5.80223 5.84656 5.90534 6.10151 6.28223 6.40440 6.82859 6.91337 7.04555 7.54036 8.00633 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.002062 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.108809 B =13574.192114 C =14421.991057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.012 3.988 3 Si 1.112 2.888 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.567 4.567 8 H 0.056 0.944 9 C 0.081 3.919 10 C -0.248 4.248 11 C -0.069 4.069 12 C -0.260 4.260 13 C 0.190 3.810 14 N -0.669 5.669 15 C 0.695 3.305 16 O -0.616 6.616 17 N -0.716 5.716 18 C 0.158 3.842 19 H 0.067 0.933 20 C -0.136 4.136 21 C 0.041 3.959 22 N -0.525 5.525 23 C -0.010 4.010 24 C 0.258 3.742 25 F -0.219 7.219 26 F -0.221 7.221 27 C 0.044 3.956 28 C -0.243 4.243 29 H 0.283 0.717 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.420 0.580 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.157 0.843 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -27.016 -4.466 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.206 4.206 3 Si 0.929 3.071 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.078 3.922 10 C -0.268 4.268 11 C -0.088 4.088 12 C -0.282 4.282 13 C 0.096 3.904 14 N -0.317 5.317 15 C 0.396 3.604 16 O -0.495 6.495 17 N -0.374 5.374 18 C 0.052 3.948 19 H 0.085 0.915 20 C -0.175 4.175 21 C -0.087 4.087 22 N -0.250 5.250 23 C -0.139 4.139 24 C 0.205 3.795 25 F -0.201 7.201 26 F -0.203 7.203 27 C -0.084 4.084 28 C -0.265 4.265 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.258 0.742 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.144 0.856 41 H 0.174 0.826 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.714 -24.429 -4.658 25.759 hybrid contribution -0.751 -2.240 0.339 2.387 sum 5.963 -26.669 -4.318 27.666 Atomic orbital electron populations 1.70564 1.08676 1.32948 1.30524 1.28344 0.95649 1.07043 0.89516 0.83085 0.74965 0.70099 0.78927 1.18688 1.19125 1.18678 1.20618 1.05662 0.96578 1.36694 0.92610 1.17844 0.90870 0.92624 0.90827 1.21067 1.06702 0.97637 1.01423 1.20778 0.97843 0.91949 0.98207 1.20426 1.07966 0.97512 1.02268 1.17316 0.96400 0.82824 0.93858 1.42331 1.11639 1.10697 1.67063 1.16188 0.82344 0.83398 0.78488 1.90980 1.49920 1.46383 1.62230 1.44937 1.13615 1.12197 1.66621 1.21448 0.80583 0.98613 0.94145 0.91504 1.22740 0.99419 0.96981 0.98376 1.23245 1.02208 0.95564 0.87652 1.65371 1.34159 1.13650 1.11775 1.23585 0.95727 0.89306 1.05284 1.22539 0.85360 0.98496 0.73136 1.92970 1.65968 1.82770 1.78362 1.92939 1.93993 1.97627 1.35719 1.23251 0.91943 0.93704 0.99496 1.20916 1.08742 0.92121 1.04723 0.90600 0.89458 0.85358 0.84564 0.74241 0.74828 0.92341 0.91095 0.90028 0.91669 0.89031 0.85611 0.82581 0.89870 0.88298 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.01 12.42 21.82 0.27 -44.74 16 2 C 0.01 0.64 4.80 85.25 0.41 1.05 16 3 Si 1.11 46.36 30.02 68.60 2.06 48.42 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.57 -33.79 8.93 23.46 0.21 -33.59 16 8 H 0.06 3.41 8.00 -2.91 -0.02 3.38 16 9 C 0.08 4.75 5.23 -21.31 -0.11 4.63 16 10 C -0.25 -13.29 8.16 22.75 0.19 -13.11 16 11 C -0.07 -3.09 10.02 22.20 0.22 -2.86 16 12 C -0.26 -10.66 9.97 22.58 0.23 -10.44 16 13 C 0.19 8.51 6.27 38.09 0.24 8.75 16 14 N -0.67 -22.43 5.35 -317.33 -1.70 -24.12 16 15 C 0.70 24.61 8.30 179.06 1.49 26.09 16 16 O -0.62 -29.53 13.72 -3.99 -0.05 -29.59 16 17 N -0.72 -16.26 5.05 -453.55 -2.29 -18.55 16 18 C 0.16 3.58 3.36 45.88 0.15 3.74 16 19 H 0.07 2.03 7.64 -2.39 -0.02 2.01 16 20 C -0.14 -3.06 6.78 31.49 0.21 -2.85 16 21 C 0.04 0.69 5.20 86.45 0.45 1.14 16 22 N -0.52 -7.96 5.29 -881.51 -4.67 -12.62 16 23 C -0.01 -0.08 5.20 86.30 0.45 0.37 16 24 C 0.26 2.45 5.58 71.98 0.40 2.85 16 25 F -0.22 -3.81 17.26 44.97 0.78 -3.03 16 26 F -0.22 -3.31 14.55 44.97 0.65 -2.66 16 27 C 0.04 0.61 6.19 86.45 0.54 1.15 16 28 C -0.24 -13.35 8.39 22.85 0.19 -13.16 16 29 H 0.28 16.34 7.17 -92.71 -0.66 15.68 16 30 H 0.09 4.84 6.76 -2.91 -0.02 4.82 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 33 H 0.42 9.63 8.83 -92.70 -0.82 8.81 16 34 H 0.41 5.68 8.36 -92.71 -0.78 4.91 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.66 7.95 -2.39 -0.02 1.64 16 37 H 0.08 1.59 6.73 -2.39 -0.02 1.57 16 38 H 0.07 0.87 7.82 -2.39 -0.02 0.85 16 39 H 0.09 0.31 7.88 -2.39 -0.02 0.29 16 40 H 0.13 0.51 8.13 -2.39 -0.02 0.49 16 41 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.08 0.67 7.59 -2.39 -0.02 0.65 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 4.88 6.40 -2.91 -0.02 4.86 16 Total: -1.00 -80.16 367.16 -0.12 -80.28 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.43 Total: 32.84 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.26 Total: -26.23 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -8.38 Total: -100.04 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.05 Total: -29.59 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.43 Total: -5.69 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.06 Total: 48.42 kcal Total: -80.16 -0.12 -80.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931687669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.299 kcal (2) G-P(sol) polarization free energy of solvation -80.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds