Wall clock time and date at job start Tue Mar 31 2020 22:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99802 * 2 1 4 4 C 1.53005 * 109.46892 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46947 * 65.00328 * 4 3 2 6 6 C 1.46498 * 120.00219 * 269.99794 * 5 4 3 7 7 C 1.50701 * 109.46859 * 270.00373 * 6 5 4 8 8 H 1.08000 * 120.00024 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99364 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99574 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00553 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47005 * 89.99779 * 11 9 7 13 13 H 1.48497 * 109.47248 * 210.00140 * 11 9 7 14 14 H 1.48507 * 109.47000 * 329.99980 * 11 9 7 15 15 C 1.34780 * 119.99691 * 89.99598 * 5 4 3 16 16 O 1.21279 * 119.99622 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00345 * 0.02562 * 15 5 4 18 18 C 1.53001 * 109.47322 * 179.97438 * 17 15 5 19 19 H 1.08999 * 109.86839 * 53.99349 * 18 17 15 20 20 C 1.54100 * 109.87797 * 174.99885 * 18 17 15 21 21 C 1.54817 * 104.18606 * 117.54700 * 20 18 17 22 22 C 1.54998 * 102.12466 * 339.09929 * 21 20 18 23 23 H 1.08997 * 110.62197 * 278.54323 * 22 21 20 24 24 C 1.52998 * 110.61705 * 155.53959 * 22 21 20 25 25 F 1.39900 * 109.46836 * 60.00396 * 24 22 21 26 26 F 1.39905 * 109.46826 * 180.02562 * 24 22 21 27 27 F 1.39895 * 109.47295 * 300.00242 * 24 22 21 28 28 O 1.43746 * 110.00198 * 292.90732 * 18 17 15 29 29 H 1.08995 * 109.46855 * 299.99737 * 1 2 3 30 30 H 1.09002 * 109.47152 * 59.99494 * 1 2 3 31 31 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46717 * 60.00256 * 3 2 1 33 33 H 1.08994 * 109.47550 * 300.00402 * 3 2 1 34 34 H 1.09000 * 109.47043 * 305.00191 * 4 3 2 35 35 H 1.08999 * 109.46711 * 185.00285 * 4 3 2 36 36 H 1.08998 * 109.47000 * 30.00001 * 6 5 4 37 37 H 1.09003 * 109.47183 * 150.00091 * 6 5 4 38 38 H 0.97002 * 120.00577 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47326 * 59.99831 * 17 15 5 40 40 H 1.08995 * 109.47339 * 300.00237 * 17 15 5 41 41 H 1.08991 * 110.48958 * 358.87414 * 20 18 17 42 42 H 1.08998 * 110.49031 * 236.22056 * 20 18 17 43 43 H 1.09002 * 110.90844 * 97.31763 * 21 20 18 44 44 H 1.08997 * 110.90682 * 220.88854 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3404 7 6 5.5018 -1.2980 -0.9413 8 1 6.2203 -0.5459 -0.6505 9 6 5.8611 -2.6291 -0.9475 10 7 7.0790 -2.9830 -0.5996 11 14 4.6181 -3.9298 -1.4497 12 1 4.7034 -4.1564 -2.9149 13 1 4.9121 -5.1977 -0.7348 14 1 3.2505 -3.4693 -1.0988 15 6 4.2633 1.3331 -2.3200 16 8 4.6290 0.8194 -3.3559 17 6 4.1305 2.8314 -2.2278 18 6 4.5137 3.4609 -3.5686 19 1 3.9277 3.0110 -4.3701 20 6 4.2620 4.9806 -3.5250 21 6 5.6654 5.6034 -3.7236 22 6 6.6003 4.4357 -3.3174 23 1 6.7019 4.3845 -2.2334 24 6 7.9702 4.5863 -3.9819 25 9 8.5527 5.7934 -3.5811 26 9 8.7932 3.5213 -3.6001 27 9 7.8170 4.5814 -5.3725 28 8 5.9157 3.2669 -3.8200 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1766 0.0903 36 1 3.3859 -1.3631 -0.6715 37 1 3.9139 -1.2121 -2.3646 38 1 7.3318 -3.9195 -0.6036 39 1 4.7925 3.2076 -1.4478 40 1 3.0998 3.0906 -1.9857 41 1 3.8489 5.2713 -2.5593 42 1 3.5940 5.2800 -4.3326 43 1 5.8228 5.8836 -4.7651 44 1 5.8067 6.4614 -3.0663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931897383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:03 Heat of formation + Delta-G solvation = -272.926905 kcal Electronic energy + Delta-G solvation = -31368.909824 eV Core-core repulsion = 26486.015549 eV Total energy + Delta-G solvation = -4882.894276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.11079 -47.67372 -47.53782 -40.20095 -38.82904 -37.56827 -34.90214 -32.80167 -32.47393 -32.02239 -29.89012 -28.87888 -27.26586 -26.08077 -24.72537 -22.76834 -22.48197 -21.82112 -21.05364 -18.73154 -18.48835 -18.28768 -18.04048 -16.89095 -16.78280 -16.47308 -16.13339 -15.79427 -15.50363 -15.17352 -14.84753 -14.58772 -14.39923 -14.25832 -14.24086 -14.02420 -13.90204 -13.71603 -13.71235 -13.50610 -13.11163 -12.71858 -12.46931 -12.22492 -12.14516 -12.05124 -11.82924 -11.67908 -11.51718 -11.39913 -11.35026 -11.11088 -10.97094 -10.73705 -10.36144 -10.03606 -9.93053 -9.58416 -9.42835 -8.92771 -8.46638 -7.63297 -5.97302 -3.94626 2.46271 3.27433 3.38735 3.40023 3.44713 3.48469 3.63745 3.79861 3.87918 3.92288 4.25747 4.38109 4.51241 4.51618 4.61012 4.74638 4.85784 5.01196 5.11412 5.18339 5.23198 5.25811 5.36003 5.36250 5.38176 5.44526 5.45400 5.50372 5.53541 5.60906 5.67368 5.73152 5.99202 6.15915 6.60156 6.96760 7.11068 7.27223 7.44041 7.75488 8.33893 8.58607 9.02643 9.08263 9.63968 11.16317 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.003848 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.018790 B = 7275.433343 C = 9112.128031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.044 3.956 4 C 0.112 3.888 5 N -0.588 5.588 6 C 0.221 3.779 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.506 3.494 16 O -0.525 6.525 17 C -0.164 4.164 18 C 0.095 3.905 19 H 0.110 0.890 20 C -0.146 4.146 21 C -0.148 4.148 22 C 0.023 3.977 23 H 0.112 0.888 24 C 0.464 3.536 25 F -0.180 7.180 26 F -0.171 7.171 27 F -0.175 7.175 28 O -0.323 6.323 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 21.064 -0.945 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.034 4.034 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.100 3.900 7 C -0.564 4.564 8 H 0.090 0.910 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.187 1.187 15 C 0.292 3.708 16 O -0.401 6.401 17 C -0.205 4.205 18 C 0.037 3.963 19 H 0.128 0.872 20 C -0.184 4.184 21 C -0.186 4.186 22 C -0.037 4.037 23 H 0.130 0.870 24 C 0.409 3.591 25 F -0.162 7.162 26 F -0.152 7.152 27 F -0.157 7.157 28 O -0.241 6.241 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.620 20.238 -1.598 22.465 hybrid contribution -0.555 -0.366 -0.010 0.664 sum -10.174 19.873 -1.607 22.384 Atomic orbital electron populations 1.22710 0.81940 1.02600 0.99277 1.88078 1.18828 1.27204 1.95170 1.23150 0.95384 0.85337 0.99575 1.21520 0.90950 0.99222 0.89603 1.47840 1.65002 1.08912 1.10149 1.19654 0.97590 0.74998 0.97749 1.21370 0.96195 0.93487 1.45303 0.90955 1.24829 0.95124 0.98347 0.94701 1.69904 1.18183 1.17143 1.48723 0.86876 0.82498 0.81355 0.79212 1.20089 1.21266 1.18690 1.20137 0.78379 0.88126 0.84191 1.90710 1.45319 1.74661 1.29413 1.22366 1.03371 0.95427 0.99326 1.22624 0.82407 0.93920 0.97373 0.87178 1.23024 0.97060 0.94416 1.03903 1.23190 0.94117 0.97260 1.03988 1.24302 0.89705 0.89844 0.99885 0.87013 1.20154 0.87852 0.73765 0.77302 1.93178 1.86125 1.46258 1.90618 1.93266 1.74766 1.56359 1.90790 1.93188 1.95760 1.96099 1.30637 1.89270 1.18172 1.36254 1.80375 0.94486 0.94523 0.89850 0.92886 0.93706 0.88786 0.89916 0.94074 0.95081 0.92737 0.88980 0.88477 0.89680 0.89385 0.89193 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.83 9.53 -35.23 -0.34 -6.17 16 3 C 0.04 0.54 6.28 37.16 0.23 0.78 16 4 C 0.11 1.68 5.62 -4.04 -0.02 1.66 16 5 N -0.59 -11.98 2.42 -175.06 -0.42 -12.41 16 6 C 0.22 5.59 4.05 -5.19 -0.02 5.56 16 7 C -0.52 -15.57 9.94 -34.44 -0.34 -15.91 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -28.69 13.96 55.43 0.77 -27.92 16 11 Si 0.87 22.51 27.47 -169.99 -4.67 17.84 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 15 C 0.51 10.02 7.58 -10.99 -0.08 9.93 16 16 O -0.53 -13.03 15.09 -5.74 -0.09 -13.12 16 17 C -0.16 -2.09 3.70 -27.88 -0.10 -2.19 16 18 C 0.09 1.18 2.96 -26.16 -0.08 1.10 16 19 H 0.11 1.47 7.93 -51.93 -0.41 1.06 16 20 C -0.15 -1.10 6.64 -25.20 -0.17 -1.27 16 21 C -0.15 -1.19 6.33 -24.72 -0.16 -1.34 16 22 C 0.02 0.27 3.25 -25.68 -0.08 0.18 16 23 H 0.11 1.15 8.05 -51.93 -0.42 0.73 16 24 C 0.46 6.11 2.93 37.16 0.11 6.22 16 25 F -0.18 -2.07 17.08 2.25 0.04 -2.03 16 26 F -0.17 -2.77 17.32 2.25 0.04 -2.73 16 27 F -0.18 -2.46 16.58 2.25 0.04 -2.42 16 28 O -0.32 -5.15 10.19 -46.53 -0.47 -5.63 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.50 7.30 -51.93 -0.38 0.12 16 34 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 35 H 0.08 0.94 6.44 -51.93 -0.33 0.61 16 36 H 0.04 1.03 6.17 -51.93 -0.32 0.71 16 37 H 0.03 0.85 6.85 -51.93 -0.36 0.50 16 38 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 39 H 0.09 1.03 7.28 -51.93 -0.38 0.65 16 40 H 0.10 0.90 7.26 -51.93 -0.38 0.52 16 41 H 0.08 0.46 7.69 -51.93 -0.40 0.06 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.73 7.55 -51.93 -0.39 0.34 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -38.35 371.96 -5.51 -43.85 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.31 Total: -3.13 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.30 Total: 8.25 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.35 Total: -40.32 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.90 Total: -24.92 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.35 -5.51 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.073 kcal (2) G-P(sol) polarization free energy of solvation -38.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds