Wall clock time and date at job start Tue Mar 31 2020 22:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99802 * 2 1 4 4 C 1.53005 * 109.46892 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46947 * 65.00328 * 4 3 2 6 6 C 1.46498 * 120.00219 * 269.99794 * 5 4 3 7 7 C 1.50701 * 109.46859 * 270.00373 * 6 5 4 8 8 H 1.08000 * 120.00024 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99364 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99574 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00553 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47005 * 89.99779 * 11 9 7 13 13 H 1.48497 * 109.47248 * 210.00140 * 11 9 7 14 14 H 1.48507 * 109.47000 * 329.99980 * 11 9 7 15 15 C 1.34780 * 119.99691 * 89.99598 * 5 4 3 16 16 O 1.21279 * 119.99622 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00345 * 0.02562 * 15 5 4 18 18 C 1.53001 * 109.47322 * 179.97438 * 17 15 5 19 19 H 1.08999 * 109.86839 * 53.99349 * 18 17 15 20 20 C 1.54100 * 109.87797 * 174.99885 * 18 17 15 21 21 C 1.54817 * 104.18606 * 117.54700 * 20 18 17 22 22 C 1.54998 * 102.12466 * 339.09929 * 21 20 18 23 23 H 1.08997 * 110.62197 * 278.54323 * 22 21 20 24 24 C 1.52998 * 110.61705 * 155.53959 * 22 21 20 25 25 F 1.39900 * 109.46836 * 60.00396 * 24 22 21 26 26 F 1.39905 * 109.46826 * 180.02562 * 24 22 21 27 27 F 1.39895 * 109.47295 * 300.00242 * 24 22 21 28 28 O 1.43746 * 110.00198 * 292.90732 * 18 17 15 29 29 H 1.08995 * 109.46855 * 299.99737 * 1 2 3 30 30 H 1.09002 * 109.47152 * 59.99494 * 1 2 3 31 31 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46717 * 60.00256 * 3 2 1 33 33 H 1.08994 * 109.47550 * 300.00402 * 3 2 1 34 34 H 1.09000 * 109.47043 * 305.00191 * 4 3 2 35 35 H 1.08999 * 109.46711 * 185.00285 * 4 3 2 36 36 H 1.08998 * 109.47000 * 30.00001 * 6 5 4 37 37 H 1.09003 * 109.47183 * 150.00091 * 6 5 4 38 38 H 0.97002 * 120.00577 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47326 * 59.99831 * 17 15 5 40 40 H 1.08995 * 109.47339 * 300.00237 * 17 15 5 41 41 H 1.08991 * 110.48958 * 358.87414 * 20 18 17 42 42 H 1.08998 * 110.49031 * 236.22056 * 20 18 17 43 43 H 1.09002 * 110.90844 * 97.31763 * 21 20 18 44 44 H 1.08997 * 110.90682 * 220.88854 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3404 7 6 5.5018 -1.2980 -0.9413 8 1 6.2203 -0.5459 -0.6505 9 6 5.8611 -2.6291 -0.9475 10 7 7.0790 -2.9830 -0.5996 11 14 4.6181 -3.9298 -1.4497 12 1 4.7034 -4.1564 -2.9149 13 1 4.9121 -5.1977 -0.7348 14 1 3.2505 -3.4693 -1.0988 15 6 4.2633 1.3331 -2.3200 16 8 4.6290 0.8194 -3.3559 17 6 4.1305 2.8314 -2.2278 18 6 4.5137 3.4609 -3.5686 19 1 3.9277 3.0110 -4.3701 20 6 4.2620 4.9806 -3.5250 21 6 5.6654 5.6034 -3.7236 22 6 6.6003 4.4357 -3.3174 23 1 6.7019 4.3845 -2.2334 24 6 7.9702 4.5863 -3.9819 25 9 8.5527 5.7934 -3.5811 26 9 8.7932 3.5213 -3.6001 27 9 7.8170 4.5814 -5.3725 28 8 5.9157 3.2669 -3.8200 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1766 0.0903 36 1 3.3859 -1.3631 -0.6715 37 1 3.9139 -1.2121 -2.3646 38 1 7.3318 -3.9195 -0.6036 39 1 4.7925 3.2076 -1.4478 40 1 3.0998 3.0906 -1.9857 41 1 3.8489 5.2713 -2.5593 42 1 3.5940 5.2800 -4.3326 43 1 5.8228 5.8836 -4.7651 44 1 5.8067 6.4614 -3.0663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931897383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:02 Heat of formation + Delta-G solvation = -301.213405 kcal Electronic energy + Delta-G solvation = -31370.136419 eV Core-core repulsion = 26486.015549 eV Total energy + Delta-G solvation = -4884.120870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.17420 -48.70599 -48.67556 -41.29908 -40.09979 -38.67311 -36.49747 -34.79184 -33.52424 -33.05339 -31.39431 -30.01531 -28.79769 -27.05076 -25.82062 -24.22038 -23.87886 -22.68088 -22.10890 -19.87822 -19.75705 -19.34961 -19.14892 -19.03181 -18.00169 -17.54014 -17.25036 -16.98440 -16.66896 -16.41071 -16.14461 -15.76010 -15.64128 -15.45396 -15.31996 -15.19111 -15.10523 -14.84661 -14.81816 -14.70093 -14.47732 -14.27283 -13.78334 -13.68770 -13.28470 -13.11613 -12.95820 -12.76735 -12.72152 -12.64083 -12.47044 -12.30453 -12.16456 -11.99995 -11.90706 -11.72744 -11.68847 -10.91275 -10.81690 -10.57194 -10.46453 -9.32359 -8.33294 -6.36321 1.30156 1.33820 1.44292 1.50622 1.91160 2.30737 2.31955 2.43143 2.72794 2.93239 2.98953 3.03728 3.42821 3.50595 3.67522 3.72093 3.92073 3.96218 4.16198 4.21820 4.28011 4.37818 4.47756 4.49524 4.56978 4.60432 4.64788 4.69681 4.86282 4.89962 4.91819 4.99397 5.01092 5.02959 5.03762 5.22567 5.50289 5.69097 5.76855 6.26712 6.38230 6.64507 6.83144 7.24801 7.54420 8.83955 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.003848 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.018790 B = 7275.433343 C = 9112.128031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.421 6.421 3 C 0.047 3.953 4 C 0.103 3.897 5 N -0.597 5.597 6 C 0.236 3.764 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.010 3.990 10 N -0.947 5.947 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.272 1.272 14 H -0.242 1.242 15 C 0.491 3.509 16 O -0.590 6.590 17 C -0.149 4.149 18 C 0.084 3.916 19 H 0.088 0.912 20 C -0.129 4.129 21 C -0.139 4.139 22 C 0.016 3.984 23 H 0.128 0.872 24 C 0.457 3.543 25 F -0.169 7.169 26 F -0.197 7.197 27 F -0.184 7.184 28 O -0.375 6.375 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.048 0.952 37 H 0.005 0.995 38 H 0.267 0.733 39 H 0.115 0.885 40 H 0.146 0.854 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.382 23.938 0.203 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.341 6.341 3 C -0.030 4.030 4 C -0.020 4.020 5 N -0.328 5.328 6 C 0.114 3.886 7 C -0.570 4.570 8 H 0.046 0.954 9 C -0.187 4.187 10 N -0.588 5.588 11 Si 0.768 3.232 12 H -0.204 1.204 13 H -0.197 1.197 14 H -0.165 1.165 15 C 0.281 3.719 16 O -0.471 6.471 17 C -0.188 4.188 18 C 0.027 3.973 19 H 0.106 0.894 20 C -0.166 4.166 21 C -0.176 4.176 22 C -0.043 4.043 23 H 0.145 0.855 24 C 0.403 3.597 25 F -0.150 7.150 26 F -0.178 7.178 27 F -0.166 7.166 28 O -0.294 6.294 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.163 0.837 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.862 23.169 -0.405 26.503 hybrid contribution 0.549 -1.208 -0.357 1.375 sum -12.313 21.961 -0.762 25.188 Atomic orbital electron populations 1.22857 0.79944 1.03057 1.00965 1.88005 1.21197 1.29299 1.95584 1.23203 0.92746 0.84783 1.02315 1.21914 0.93651 1.00317 0.86099 1.47944 1.65196 1.07062 1.12600 1.19128 0.94674 0.79028 0.95806 1.21637 0.97636 0.92821 1.44872 0.95405 1.25812 0.97292 1.01023 0.94622 1.70054 1.20469 1.17983 1.50250 0.85755 0.80603 0.78413 0.78446 1.20437 1.19730 1.16482 1.21489 0.76453 0.91168 0.82804 1.90674 1.48015 1.76504 1.31881 1.22439 1.06801 0.89132 1.00474 1.22813 0.80729 0.97427 0.96373 0.89403 1.23015 0.96993 0.89874 1.06731 1.23268 0.93157 0.96657 1.04557 1.24603 0.88924 0.90475 1.00316 0.85480 1.20571 0.88607 0.73437 0.77083 1.93192 1.86116 1.45275 1.90420 1.93210 1.75754 1.57846 1.91004 1.93162 1.95808 1.96127 1.31497 1.89232 1.20343 1.38656 1.81173 0.92063 0.93426 0.90223 0.88884 0.91842 0.91197 0.85668 0.93453 0.97694 0.92407 0.86655 0.83670 0.86022 0.87603 0.89631 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -12.15 9.53 -148.98 -1.42 -13.57 16 3 C 0.05 0.98 6.28 71.98 0.45 1.43 16 4 C 0.10 2.86 5.62 86.38 0.49 3.35 16 5 N -0.60 -24.32 2.42 -826.16 -2.00 -26.31 16 6 C 0.24 12.30 4.05 85.63 0.35 12.64 16 7 C -0.53 -33.00 9.94 25.60 0.25 -32.74 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.01 0.62 5.47 84.66 0.46 1.09 16 10 N -0.95 -62.70 13.96 21.45 0.30 -62.40 16 11 Si 0.94 47.69 27.47 68.60 1.88 49.57 16 12 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.24 -11.27 6.54 99.48 0.65 -10.62 16 15 C 0.49 19.46 7.58 87.66 0.66 20.12 16 16 O -0.59 -30.68 15.09 7.78 0.12 -30.56 16 17 C -0.15 -3.33 3.70 29.85 0.11 -3.22 16 18 C 0.08 1.93 2.96 30.97 0.09 2.02 16 19 H 0.09 2.34 7.93 -2.39 -0.02 2.32 16 20 C -0.13 -1.33 6.64 31.59 0.21 -1.13 16 21 C -0.14 -1.72 6.33 31.90 0.20 -1.52 16 22 C 0.02 0.35 3.25 31.28 0.10 0.46 16 23 H 0.13 2.33 8.05 -2.39 -0.02 2.31 16 24 C 0.46 12.06 2.93 71.98 0.21 12.27 16 25 F -0.17 -3.68 17.08 44.97 0.77 -2.92 16 26 F -0.20 -6.69 17.32 44.97 0.78 -5.91 16 27 F -0.18 -5.28 16.58 44.97 0.75 -4.53 16 28 O -0.37 -12.04 10.19 -138.17 -1.41 -13.44 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.10 7.30 -2.39 -0.02 1.08 16 34 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 35 H 0.13 2.34 6.44 -2.39 -0.02 2.32 16 36 H 0.05 2.39 6.17 -2.39 -0.01 2.38 16 37 H 0.00 0.28 6.85 -2.39 -0.02 0.27 16 38 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 39 H 0.12 2.08 7.28 -2.39 -0.02 2.06 16 40 H 0.15 1.83 7.26 -2.39 -0.02 1.81 16 41 H 0.12 0.43 7.69 -2.39 -0.02 0.41 16 42 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 1.15 7.55 -2.39 -0.02 1.14 16 44 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -93.60 371.96 5.57 -88.03 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.96 Total: 5.47 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 4.84 Total: 16.57 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.70 Total: -88.71 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -2.71 Total: -57.57 kcal Atomic # 9 Polarization: -15.65 SS G_CDS: 2.29 Total: -13.35 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.88 Total: 49.57 kcal Total: -93.60 5.57 -88.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.186 kcal (2) G-P(sol) polarization free energy of solvation -93.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -306.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -301.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds