Wall clock time and date at job start Tue Mar 31 2020 22:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99911 * 2 1 4 4 C 1.52998 * 109.46828 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47528 * 65.00466 * 4 3 2 6 6 C 1.46491 * 120.00453 * 89.99575 * 5 4 3 7 7 C 1.50702 * 109.46957 * 90.00133 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.34780 * 119.99526 * 270.00078 * 5 4 3 16 16 O 1.21285 * 119.99673 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00400 * 359.97438 * 15 5 4 18 18 C 1.52994 * 109.47577 * 179.97438 * 17 15 5 19 19 H 1.09007 * 109.86925 * 306.01362 * 18 17 15 20 20 C 1.54094 * 109.88388 * 185.00062 * 18 17 15 21 21 C 1.54805 * 104.19220 * 242.60663 * 20 18 17 22 22 C 1.55000 * 102.09019 * 20.88264 * 21 20 18 23 23 H 1.08994 * 110.62328 * 81.47729 * 22 21 20 24 24 C 1.52998 * 110.61623 * 204.31889 * 22 21 20 25 25 F 1.39901 * 109.47524 * 59.99635 * 24 22 21 26 26 F 1.39896 * 109.47349 * 179.97438 * 24 22 21 27 27 F 1.39903 * 109.47282 * 299.99827 * 24 22 21 28 28 O 1.43750 * 109.87793 * 67.16835 * 18 17 15 29 29 H 1.09007 * 109.46546 * 299.99698 * 1 2 3 30 30 H 1.09001 * 109.47458 * 59.99201 * 1 2 3 31 31 H 1.08996 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47163 * 60.00539 * 3 2 1 33 33 H 1.08997 * 109.47372 * 300.00210 * 3 2 1 34 34 H 1.09005 * 109.47023 * 304.99680 * 4 3 2 35 35 H 1.09006 * 109.47021 * 185.00478 * 4 3 2 36 36 H 1.09004 * 109.47166 * 330.00399 * 6 5 4 37 37 H 1.08994 * 109.47507 * 210.00106 * 6 5 4 38 38 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.47359 * 300.00599 * 17 15 5 40 40 H 1.09008 * 109.46888 * 59.99948 * 17 15 5 41 41 H 1.09004 * 110.48655 * 1.28800 * 20 18 17 42 42 H 1.09005 * 110.48995 * 123.79528 * 20 18 17 43 43 H 1.09006 * 110.90798 * 139.07399 * 21 20 18 44 44 H 1.08993 * 110.91163 * 262.68360 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2864 1.4007 -2.4147 7 6 5.7443 1.7811 -2.3844 8 1 6.3763 1.4343 -1.5802 9 6 6.2728 2.5667 -3.3867 10 7 5.5032 2.9887 -4.3662 11 14 8.0816 3.0319 -3.3532 12 1 8.8701 2.0062 -4.0822 13 1 8.2650 4.3532 -4.0057 14 1 8.5477 3.1061 -1.9452 15 6 4.0948 -0.7755 -1.3355 16 8 4.4589 -1.2890 -2.3723 17 6 3.7757 -1.6358 -0.1401 18 6 3.9907 -3.1075 -0.4987 19 1 3.4192 -3.3583 -1.3924 20 6 3.5482 -4.0029 0.6747 21 6 4.8450 -4.7284 1.1086 22 6 5.9446 -3.7993 0.5339 23 1 6.1163 -2.9518 1.1973 24 6 7.2430 -4.5767 0.3084 25 9 7.0118 -5.6185 -0.5962 26 9 8.2171 -3.7170 -0.2102 27 9 7.6871 -5.1056 1.5251 28 8 5.3885 -3.3568 -0.7229 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1765 0.0890 36 1 3.6749 2.3026 -2.3872 37 1 4.0747 0.8459 -3.3287 38 1 5.8750 3.5418 -5.0712 39 1 4.4299 -1.3639 0.6882 40 1 2.7368 -1.4813 0.1518 41 1 3.1588 -3.3958 1.4921 42 1 2.7985 -4.7220 0.3444 43 1 4.9135 -4.7864 2.1949 44 1 4.9029 -5.7214 0.6630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931897385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:09 Heat of formation + Delta-G solvation = -278.333440 kcal Electronic energy + Delta-G solvation = -31611.309009 eV Core-core repulsion = 26728.180288 eV Total energy + Delta-G solvation = -4883.128721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.09343 -47.65327 -47.52615 -40.05721 -38.71262 -37.51898 -34.80335 -32.75550 -32.41961 -31.90452 -29.59352 -28.72793 -26.83383 -26.15693 -24.60293 -22.89114 -22.54761 -21.75617 -21.04267 -18.69665 -18.37643 -18.24721 -17.94180 -16.63589 -16.54880 -16.36776 -16.23539 -15.58781 -15.52602 -15.08838 -14.85205 -14.53193 -14.42197 -14.33925 -14.07185 -13.98512 -13.81832 -13.70366 -13.69150 -13.38008 -12.93213 -12.55573 -12.35031 -12.28481 -11.99073 -11.87260 -11.76616 -11.53230 -11.35397 -11.24293 -11.12173 -10.96859 -10.86262 -10.75539 -10.52643 -10.09567 -9.78201 -9.63772 -9.53862 -8.70527 -8.38489 -7.57367 -5.99685 -4.03848 2.50851 3.35194 3.36623 3.41825 3.43662 3.64604 3.69183 3.78877 3.93587 4.01414 4.34511 4.45220 4.51513 4.63579 4.75295 4.88398 5.00094 5.17660 5.20352 5.31108 5.34212 5.35213 5.38103 5.44456 5.48005 5.52244 5.60271 5.61875 5.66084 5.78293 5.88808 6.11487 6.16740 6.23729 6.75892 7.09439 7.17807 7.51716 7.64792 7.97841 8.29519 8.52537 8.97519 9.26765 9.61816 11.08263 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008568 B = 0.004562 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.310808 B = 6135.837030 C = 8738.843057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.041 3.959 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.517 3.483 16 O -0.533 6.533 17 C -0.168 4.168 18 C 0.096 3.904 19 H 0.109 0.891 20 C -0.145 4.145 21 C -0.148 4.148 22 C 0.023 3.977 23 H 0.110 0.890 24 C 0.463 3.537 25 F -0.175 7.175 26 F -0.173 7.173 27 F -0.181 7.181 28 O -0.325 6.325 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.028 0.972 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 -11.919 16.548 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.036 4.036 4 C -0.010 4.010 5 N -0.332 5.332 6 C 0.129 3.871 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.304 3.696 16 O -0.409 6.409 17 C -0.208 4.208 18 C 0.038 3.962 19 H 0.127 0.873 20 C -0.183 4.183 21 C -0.185 4.185 22 C -0.037 4.037 23 H 0.128 0.872 24 C 0.409 3.591 25 F -0.157 7.157 26 F -0.154 7.154 27 F -0.162 7.162 28 O -0.244 6.244 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.801 -12.215 15.585 21.283 hybrid contribution 0.920 0.662 0.161 1.145 sum -6.881 -11.553 15.746 20.707 Atomic orbital electron populations 1.22698 0.81734 1.02309 0.99773 1.87799 1.19187 1.28292 1.95421 1.23198 0.95340 0.84619 1.00471 1.21475 0.90944 1.00520 0.88025 1.48109 1.65552 1.06081 1.13442 1.19218 0.95628 0.89017 0.83281 1.21459 0.94885 1.30837 1.09062 0.92502 1.24924 0.98015 0.95980 0.95142 1.69936 1.35562 1.35968 1.12063 0.86527 0.85260 0.77647 0.78158 1.20504 1.21236 1.19957 1.20070 0.77729 0.82584 0.89199 1.90692 1.46071 1.72688 1.31450 1.22488 1.05207 0.94573 0.98510 1.22656 0.81597 0.93128 0.98844 0.87335 1.23007 0.97549 0.99074 0.98668 1.23183 0.93474 0.99555 1.02329 1.24254 0.91121 0.97578 0.90712 0.87205 1.20204 0.86594 0.78460 0.73851 1.93188 1.94524 1.59830 1.68135 1.93245 1.65530 1.69705 1.86924 1.93176 1.90730 1.87325 1.45002 1.89233 1.22708 1.86539 1.25902 0.94448 0.94142 0.90030 0.92884 0.92524 0.90987 0.88511 0.95425 0.93946 0.92813 0.89961 0.85891 0.89643 0.89543 0.88861 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.95 7.42 -35.23 -0.26 -5.21 16 3 C 0.04 0.54 6.28 37.16 0.23 0.77 16 4 C 0.12 1.78 5.78 -4.04 -0.02 1.76 16 5 N -0.60 -12.64 2.44 -175.06 -0.43 -13.07 16 6 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 7 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 11 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.52 10.96 7.27 -10.98 -0.08 10.88 16 16 O -0.53 -13.91 15.09 -5.77 -0.09 -14.00 16 17 C -0.17 -2.48 3.62 -27.89 -0.10 -2.59 16 18 C 0.10 1.34 2.97 -26.16 -0.08 1.26 16 19 H 0.11 1.65 7.93 -51.93 -0.41 1.24 16 20 C -0.15 -1.30 6.64 -25.21 -0.17 -1.47 16 21 C -0.15 -1.32 6.34 -24.72 -0.16 -1.48 16 22 C 0.02 0.29 3.22 -25.68 -0.08 0.21 16 23 H 0.11 1.21 8.03 -51.93 -0.42 0.79 16 24 C 0.46 6.24 2.93 37.16 0.11 6.35 16 25 F -0.18 -2.51 16.58 2.25 0.04 -2.48 16 26 F -0.17 -2.78 17.32 2.25 0.04 -2.75 16 27 F -0.18 -2.12 17.08 2.25 0.04 -2.08 16 28 O -0.33 -5.49 10.19 -46.55 -0.47 -5.97 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.94 6.44 -51.93 -0.33 0.61 16 35 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 36 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.09 7.25 -51.93 -0.38 0.71 16 40 H 0.12 1.60 5.12 -51.92 -0.27 1.33 16 41 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.79 7.55 -51.93 -0.39 0.40 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -35.63 373.05 -5.80 -41.43 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.33 Total: -2.56 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 0.32 Total: 9.90 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.27 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.82 Total: -25.17 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.11 Total: -7.30 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.63 -5.80 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.899 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds