Wall clock time and date at job start Tue Mar 31 2020 22:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99911 * 2 1 4 4 C 1.52998 * 109.46828 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47528 * 65.00466 * 4 3 2 6 6 C 1.46491 * 120.00453 * 89.99575 * 5 4 3 7 7 C 1.50702 * 109.46957 * 90.00133 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.34780 * 119.99526 * 270.00078 * 5 4 3 16 16 O 1.21285 * 119.99673 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00400 * 359.97438 * 15 5 4 18 18 C 1.52994 * 109.47577 * 179.97438 * 17 15 5 19 19 H 1.09007 * 109.86925 * 306.01362 * 18 17 15 20 20 C 1.54094 * 109.88388 * 185.00062 * 18 17 15 21 21 C 1.54805 * 104.19220 * 242.60663 * 20 18 17 22 22 C 1.55000 * 102.09019 * 20.88264 * 21 20 18 23 23 H 1.08994 * 110.62328 * 81.47729 * 22 21 20 24 24 C 1.52998 * 110.61623 * 204.31889 * 22 21 20 25 25 F 1.39901 * 109.47524 * 59.99635 * 24 22 21 26 26 F 1.39896 * 109.47349 * 179.97438 * 24 22 21 27 27 F 1.39903 * 109.47282 * 299.99827 * 24 22 21 28 28 O 1.43750 * 109.87793 * 67.16835 * 18 17 15 29 29 H 1.09007 * 109.46546 * 299.99698 * 1 2 3 30 30 H 1.09001 * 109.47458 * 59.99201 * 1 2 3 31 31 H 1.08996 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47163 * 60.00539 * 3 2 1 33 33 H 1.08997 * 109.47372 * 300.00210 * 3 2 1 34 34 H 1.09005 * 109.47023 * 304.99680 * 4 3 2 35 35 H 1.09006 * 109.47021 * 185.00478 * 4 3 2 36 36 H 1.09004 * 109.47166 * 330.00399 * 6 5 4 37 37 H 1.08994 * 109.47507 * 210.00106 * 6 5 4 38 38 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.47359 * 300.00599 * 17 15 5 40 40 H 1.09008 * 109.46888 * 59.99948 * 17 15 5 41 41 H 1.09004 * 110.48655 * 1.28800 * 20 18 17 42 42 H 1.09005 * 110.48995 * 123.79528 * 20 18 17 43 43 H 1.09006 * 110.90798 * 139.07399 * 21 20 18 44 44 H 1.08993 * 110.91163 * 262.68360 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2864 1.4007 -2.4147 7 6 5.7443 1.7811 -2.3844 8 1 6.3763 1.4343 -1.5802 9 6 6.2728 2.5667 -3.3867 10 7 5.5032 2.9887 -4.3662 11 14 8.0816 3.0319 -3.3532 12 1 8.8701 2.0062 -4.0822 13 1 8.2650 4.3532 -4.0057 14 1 8.5477 3.1061 -1.9452 15 6 4.0948 -0.7755 -1.3355 16 8 4.4589 -1.2890 -2.3723 17 6 3.7757 -1.6358 -0.1401 18 6 3.9907 -3.1075 -0.4987 19 1 3.4192 -3.3583 -1.3924 20 6 3.5482 -4.0029 0.6747 21 6 4.8450 -4.7284 1.1086 22 6 5.9446 -3.7993 0.5339 23 1 6.1163 -2.9518 1.1973 24 6 7.2430 -4.5767 0.3084 25 9 7.0118 -5.6185 -0.5962 26 9 8.2171 -3.7170 -0.2102 27 9 7.6871 -5.1056 1.5251 28 8 5.3885 -3.3568 -0.7229 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1765 0.0890 36 1 3.6749 2.3026 -2.3872 37 1 4.0747 0.8459 -3.3287 38 1 5.8750 3.5418 -5.0712 39 1 4.4299 -1.3639 0.6882 40 1 2.7368 -1.4813 0.1518 41 1 3.1588 -3.3958 1.4921 42 1 2.7985 -4.7220 0.3444 43 1 4.9135 -4.7864 2.1949 44 1 4.9029 -5.7214 0.6630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931897385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:08 Heat of formation + Delta-G solvation = -302.518833 kcal Electronic energy + Delta-G solvation = -31612.357767 eV Core-core repulsion = 26728.180288 eV Total energy + Delta-G solvation = -4884.177478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.16271 -48.69193 -48.66163 -41.25332 -40.05646 -38.64516 -36.48928 -34.79160 -33.45983 -32.99061 -31.04224 -29.96755 -28.49596 -27.06188 -25.86039 -24.60169 -23.80175 -22.68183 -22.14440 -19.82284 -19.74263 -19.33519 -19.06470 -18.62076 -17.89169 -17.60600 -17.33940 -16.89068 -16.70637 -16.43291 -16.16399 -15.87818 -15.60735 -15.43777 -15.25714 -15.10456 -14.96530 -14.82521 -14.79959 -14.67696 -14.30493 -14.17009 -13.60615 -13.43799 -13.35427 -13.07661 -13.02909 -12.77148 -12.71566 -12.64949 -12.42940 -12.30604 -12.22447 -12.07594 -11.89522 -11.69566 -11.67014 -10.85848 -10.64834 -10.53426 -10.42569 -9.36206 -8.22000 -6.36346 1.34015 1.38738 1.47129 1.51224 2.02383 2.31757 2.37633 2.50626 2.73740 2.89930 2.95027 3.07240 3.45778 3.53435 3.73173 3.81606 3.95376 4.00439 4.15772 4.22124 4.25915 4.44961 4.51372 4.58278 4.60127 4.65841 4.70414 4.86534 4.91823 4.93845 4.97119 5.01168 5.05546 5.11732 5.24692 5.27489 5.59075 5.79292 5.89098 6.08653 6.30168 6.72288 6.88831 7.30640 7.64354 8.84654 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008568 B = 0.004562 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.310808 B = 6135.837030 C = 8738.843057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.050 3.950 4 C 0.107 3.893 5 N -0.605 5.605 6 C 0.265 3.735 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.286 1.286 13 H -0.272 1.272 14 H -0.260 1.260 15 C 0.503 3.497 16 O -0.597 6.597 17 C -0.148 4.148 18 C 0.087 3.913 19 H 0.082 0.918 20 C -0.129 4.129 21 C -0.138 4.138 22 C 0.016 3.984 23 H 0.127 0.873 24 C 0.459 3.541 25 F -0.185 7.185 26 F -0.195 7.195 27 F -0.168 7.168 28 O -0.373 6.373 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.022 0.978 37 H -0.011 1.011 38 H 0.266 0.734 39 H 0.107 0.893 40 H 0.148 0.852 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 -12.357 20.391 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.027 4.027 4 C -0.016 4.016 5 N -0.336 5.336 6 C 0.143 3.857 7 C -0.578 4.578 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.787 3.213 12 H -0.212 1.212 13 H -0.197 1.197 14 H -0.184 1.184 15 C 0.293 3.707 16 O -0.478 6.478 17 C -0.187 4.187 18 C 0.030 3.970 19 H 0.100 0.900 20 C -0.167 4.167 21 C -0.175 4.175 22 C -0.044 4.044 23 H 0.145 0.855 24 C 0.405 3.595 25 F -0.166 7.166 26 F -0.176 7.176 27 F -0.149 7.149 28 O -0.293 6.293 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.008 0.992 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.147 0.853 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.523 -12.642 19.493 24.747 hybrid contribution 1.094 0.778 -1.063 1.712 sum -7.429 -11.864 18.429 23.142 Atomic orbital electron populations 1.22891 0.79891 1.03744 1.00388 1.87723 1.21103 1.27958 1.95569 1.23029 0.93377 0.85101 1.01229 1.21833 0.92940 1.00650 0.86165 1.48140 1.65408 1.06173 1.13891 1.18624 0.94651 0.88574 0.83819 1.21726 0.95964 1.30931 1.09135 0.93054 1.25824 1.02688 0.95874 0.94668 1.70051 1.37612 1.36495 1.12690 0.85489 0.79382 0.77537 0.78853 1.21198 1.19676 1.18401 1.21308 0.76227 0.82765 0.90400 1.90654 1.48898 1.73843 1.34393 1.22477 1.06947 0.93672 0.95601 1.22762 0.80586 0.93525 1.00150 0.90011 1.22983 0.97824 0.98702 0.97155 1.23254 0.91580 0.98456 1.04226 1.24574 0.91225 0.98916 0.89644 0.85521 1.20504 0.86836 0.78236 0.73904 1.93165 1.94548 1.60220 1.68670 1.93198 1.66588 1.70445 1.87378 1.93193 1.90682 1.87120 1.43949 1.89193 1.24325 1.86997 1.28749 0.92032 0.95295 0.88281 0.88761 0.95035 0.87616 0.88836 0.96024 0.99244 0.92483 0.87506 0.83429 0.86599 0.87792 0.85281 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -9.25 7.42 -148.98 -1.11 -10.36 16 3 C 0.05 1.20 6.28 71.98 0.45 1.65 16 4 C 0.11 3.15 5.78 86.38 0.50 3.65 16 5 N -0.60 -26.11 2.44 -826.16 -2.02 -28.12 16 6 C 0.26 14.70 5.16 85.64 0.44 15.14 16 7 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.49 5.46 84.66 0.46 0.95 16 10 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 11 Si 0.96 46.51 29.54 68.60 2.03 48.53 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 15 C 0.50 21.84 7.27 87.66 0.64 22.48 16 16 O -0.60 -33.18 15.09 7.78 0.12 -33.06 16 17 C -0.15 -4.11 3.62 29.85 0.11 -4.00 16 18 C 0.09 2.35 2.97 30.96 0.09 2.44 16 19 H 0.08 2.57 7.93 -2.38 -0.02 2.55 16 20 C -0.13 -1.81 6.64 31.58 0.21 -1.60 16 21 C -0.14 -1.96 6.34 31.89 0.20 -1.75 16 22 C 0.02 0.36 3.22 31.28 0.10 0.46 16 23 H 0.13 2.43 8.03 -2.39 -0.02 2.42 16 24 C 0.46 12.04 2.93 71.98 0.21 12.26 16 25 F -0.18 -5.29 16.58 44.97 0.75 -4.55 16 26 F -0.19 -6.36 17.32 44.97 0.78 -5.58 16 27 F -0.17 -3.63 17.08 44.97 0.77 -2.86 16 28 O -0.37 -12.64 10.19 -138.16 -1.41 -14.05 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 2.40 6.44 -2.38 -0.02 2.38 16 35 H 0.09 2.81 8.07 -2.38 -0.02 2.79 16 36 H 0.02 1.20 8.07 -2.38 -0.02 1.19 16 37 H -0.01 -0.69 7.42 -2.39 -0.02 -0.71 16 38 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 39 H 0.11 2.45 7.25 -2.39 -0.02 2.43 16 40 H 0.15 3.37 5.12 -2.38 -0.01 3.35 16 41 H 0.12 0.97 7.70 -2.38 -0.02 0.95 16 42 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.09 1.29 7.55 -2.39 -0.02 1.28 16 Total: -1.00 -84.77 373.05 6.11 -78.66 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.02 Total: 7.10 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 4.91 Total: 21.60 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.73 Total: -85.44 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -2.40 Total: -57.47 kcal Atomic # 9 Polarization: -15.28 SS G_CDS: 2.29 Total: -12.99 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -84.77 6.11 -78.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.857 kcal (2) G-P(sol) polarization free energy of solvation -84.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -308.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -302.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds