Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48501 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47079 * 299.99451 * 3 2 1 6 6 H 1.48498 * 109.47211 * 59.99876 * 3 2 1 7 7 C 1.39883 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00634 * 194.28459 * 7 2 1 9 9 C 1.41224 * 119.99873 * 14.28977 * 7 2 1 10 10 C 1.40834 * 120.17688 * 31.37655 * 9 7 2 11 11 C 1.36441 * 119.80819 * 180.27894 * 10 9 7 12 12 C 1.39311 * 120.18777 * 359.47725 * 11 10 9 13 13 O 1.35665 * 119.81985 * 180.27943 * 12 11 10 14 14 C 1.42900 * 117.00006 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.08990 * 109.47136 * 54.99391 * 15 14 13 17 17 O 1.42906 * 109.46762 * 294.99406 * 15 14 13 18 18 C 1.52997 * 109.47203 * 174.99690 * 15 14 13 19 19 N 1.46893 * 109.47338 * 178.42205 * 18 15 14 20 20 C 1.46849 * 111.00584 * 176.46046 * 19 18 15 21 21 C 1.53031 * 109.52804 * 174.16016 * 20 19 18 22 22 C 1.53114 * 109.27739 * 59.17877 * 21 20 19 23 23 H 1.09007 * 109.52493 * 62.25174 * 22 21 20 24 24 O 1.42900 * 109.52545 * 182.37755 * 22 21 20 25 25 C 1.53118 * 109.16276 * 302.34661 * 22 21 20 26 26 H 1.08999 * 109.50721 * 177.59889 * 25 22 21 27 27 F 1.39906 * 109.50487 * 297.67414 * 25 22 21 28 28 C 1.46849 * 111.00034 * 52.24971 * 19 18 15 29 29 C 1.39312 * 120.36042 * 0.30095 * 12 11 10 30 30 C 1.36440 * 120.19049 * 359.95736 * 29 12 11 31 31 H 0.97001 * 120.00102 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.09851 * 0.05658 * 10 9 7 33 33 H 1.08004 * 119.90480 * 179.75999 * 11 10 9 34 34 H 1.09003 * 109.46894 * 299.99461 * 14 13 12 35 35 H 1.08996 * 109.47577 * 59.99700 * 14 13 12 36 36 H 0.96700 * 113.99691 * 300.00278 * 17 15 14 37 37 H 1.09000 * 109.46914 * 298.42160 * 18 15 14 38 38 H 1.09003 * 109.47093 * 58.41940 * 18 15 14 39 39 H 1.09003 * 109.45785 * 294.17879 * 20 19 18 40 40 H 1.09001 * 109.45961 * 54.15274 * 20 19 18 41 41 H 1.08999 * 109.50694 * 179.12277 * 21 20 19 42 42 H 1.09003 * 109.50181 * 299.23855 * 21 20 19 43 43 H 0.96698 * 114.00669 * 180.02562 * 24 22 21 44 44 H 1.08995 * 109.46023 * 305.85558 * 28 19 18 45 45 H 1.08994 * 109.46179 * 65.82211 * 28 19 18 46 46 H 1.08003 * 119.90614 * 179.97438 * 29 12 11 47 47 H 1.07995 * 120.10061 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0632 -1.2258 0.2313 9 6 1.3350 -2.4157 -0.3008 10 6 0.2467 -2.4137 -1.1947 11 6 -0.4020 -3.5806 -1.4761 12 6 0.0162 -4.7734 -0.8904 13 8 -0.6306 -5.9303 -1.1798 14 6 -0.1518 -7.1176 -0.5451 15 6 -0.9987 -8.3113 -0.9909 16 1 -0.9992 -8.3702 -2.0793 17 8 -2.3386 -8.1463 -0.5222 18 6 -0.4105 -9.5991 -0.4108 19 7 -1.2451 -10.7409 -0.8076 20 6 -0.6644 -12.0055 -0.3385 21 6 -1.6288 -13.1545 -0.6411 22 6 -1.8835 -13.2168 -2.1496 23 1 -0.9478 -13.4243 -2.6688 24 8 -2.8264 -14.2527 -2.4324 25 6 -2.4427 -11.8715 -2.6209 26 1 -2.5861 -11.8953 -3.7011 27 9 -3.6689 -11.6293 -1.9923 28 6 -1.4546 -10.7597 -2.2610 29 6 1.0948 -4.7847 -0.0087 30 6 1.7511 -3.6257 0.2874 31 1 -0.4850 0.8400 -0.0004 32 1 -0.0758 -1.4907 -1.6534 33 1 -1.2393 -3.5803 -2.1583 34 1 0.8881 -7.2855 -0.8256 35 1 -0.2226 -7.0053 0.5367 36 1 -2.4140 -8.0863 0.4400 37 1 0.6016 -9.7395 -0.7904 38 1 -0.3841 -9.5288 0.6767 39 1 0.2823 -12.1819 -0.8492 40 1 -0.4923 -11.9495 0.7363 41 1 -1.1908 -14.0950 -0.3068 42 1 -2.5710 -12.9857 -0.1196 43 1 -3.0349 -14.3491 -3.3717 44 1 -1.8564 -9.7988 -2.5823 45 1 -0.5043 -10.9419 -2.7626 46 1 1.4126 -5.7135 0.4415 47 1 2.5872 -3.6362 0.9708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934567182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = -161.658146 kcal Electronic energy + Delta-G solvation = -29114.899913 eV Core-core repulsion = 24791.060142 eV Total energy + Delta-G solvation = -4323.839771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -47.70615 -39.69774 -38.86160 -37.64152 -36.55682 -35.81592 -33.27860 -32.56428 -31.01096 -30.33734 -29.48943 -28.93371 -26.11473 -24.68717 -24.03931 -23.31824 -21.63313 -20.67422 -20.60909 -20.19782 -17.96479 -17.45242 -17.32891 -16.84403 -16.58254 -16.21131 -15.98196 -15.73771 -15.45258 -15.18736 -14.58756 -14.32327 -14.22343 -14.01452 -13.93770 -13.76359 -13.23208 -13.17418 -12.83026 -12.56381 -12.31908 -12.23259 -12.16711 -12.10052 -11.81839 -11.74379 -11.41426 -11.27469 -11.17937 -11.00760 -10.87005 -10.74381 -10.64107 -10.14620 -9.98345 -9.90622 -9.79008 -9.34555 -9.08416 -8.68730 -7.68357 -6.98592 -6.69312 -4.28265 2.76400 2.90506 3.09749 3.14718 3.17753 3.21368 3.60711 3.87778 3.97319 4.00609 4.10999 4.30554 4.44557 4.52599 4.63852 4.65798 4.74843 4.81054 4.87957 4.99721 5.03977 5.15695 5.23250 5.30962 5.35840 5.39783 5.48481 5.53262 5.56200 5.62000 5.85623 5.94413 6.01602 6.18593 6.54656 6.64932 6.69051 6.94107 7.07520 7.11291 7.18691 7.40557 7.53679 7.73398 7.74889 7.99966 8.17001 8.41865 8.63377 8.90076 8.96435 10.27735 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040321 B = 0.001768 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.262492 B =15833.224428 C =16183.272505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.469 4.469 8 H 0.076 0.924 9 C 0.090 3.910 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.002 4.002 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.111 3.889 16 H 0.104 0.896 17 O -0.537 6.537 18 C 0.027 3.973 19 N -0.521 5.521 20 C 0.056 3.944 21 C -0.111 4.111 22 C 0.079 3.921 23 H 0.068 0.932 24 O -0.556 6.556 25 C 0.070 3.930 26 H 0.085 0.915 27 F -0.190 7.190 28 C 0.021 3.979 29 C -0.172 4.172 30 C -0.192 4.192 31 H 0.279 0.721 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.374 0.626 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.379 0.621 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.093 0.907 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -23.445 -3.854 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.500 4.500 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.046 4.046 13 O -0.232 6.232 14 C -0.039 4.039 15 C 0.051 3.949 16 H 0.121 0.879 17 O -0.341 6.341 18 C -0.101 4.101 19 N -0.246 5.246 20 C -0.072 4.072 21 C -0.148 4.148 22 C 0.019 3.981 23 H 0.086 0.914 24 O -0.362 6.362 25 C 0.033 3.967 26 H 0.103 0.897 27 F -0.171 7.171 28 C -0.107 4.107 29 C -0.190 4.190 30 C -0.211 4.211 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.121 0.879 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.016 -23.336 -3.710 23.715 hybrid contribution 1.519 0.810 -0.122 1.726 sum -0.496 -22.525 -3.832 22.854 Atomic orbital electron populations 1.69820 1.07374 1.28959 1.37104 1.25836 0.94763 1.01039 0.92517 0.86284 0.80823 0.81235 0.78459 1.18587 1.19829 1.20123 1.19436 0.96790 0.90764 1.43012 0.90584 1.17602 0.91849 0.92238 0.89544 1.20888 0.98619 0.95745 0.99116 1.19843 1.01140 0.90648 1.02385 1.18629 0.97087 0.84944 1.03901 1.85885 1.56666 1.13633 1.67050 1.23113 0.97638 0.85792 0.97380 1.21931 0.83030 0.90040 0.99937 0.87853 1.86639 1.24984 1.95555 1.26937 1.22744 0.94828 0.90718 1.01813 1.61766 1.48375 1.02093 1.12328 1.22125 0.95145 0.88544 1.01408 1.21509 1.01598 0.98179 0.93547 1.22490 0.91599 0.85971 0.98022 0.91418 1.86574 1.64135 1.54800 1.30668 1.22277 0.81909 0.95768 0.96723 0.89696 1.92872 1.44425 1.95338 1.84472 1.22805 0.98191 1.00607 0.89121 1.20412 0.98644 0.97931 1.02059 1.20634 1.03355 0.93052 1.04096 0.91045 0.86227 0.88347 0.92581 0.92700 0.77952 0.93475 0.89519 0.94516 0.89509 0.90282 0.89437 0.77384 0.87929 0.93162 0.88907 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.13 11.22 55.54 0.62 -20.51 16 2 C 0.07 1.88 5.16 -17.34 -0.09 1.79 16 3 Si 0.91 18.82 29.58 -169.99 -5.03 13.79 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.47 -12.46 9.02 -37.83 -0.34 -12.80 16 8 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 9 C 0.09 2.39 5.50 -106.80 -0.59 1.80 16 10 C -0.12 -3.24 8.59 -39.25 -0.34 -3.57 16 11 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 12 C 0.00 -0.06 6.71 -38.78 -0.26 -0.32 16 13 O -0.32 -6.36 10.09 -23.54 -0.24 -6.60 16 14 C 0.04 0.56 4.36 37.16 0.16 0.72 16 15 C 0.11 1.32 2.66 -26.73 -0.07 1.25 16 16 H 0.10 1.28 6.29 -51.93 -0.33 0.95 16 17 O -0.54 -7.41 13.14 -40.08 -0.53 -7.94 16 18 C 0.03 0.24 4.79 -3.83 -0.02 0.22 16 19 N -0.52 -4.81 4.54 -234.68 -1.06 -5.88 16 20 C 0.06 0.41 5.46 -3.84 -0.02 0.39 16 21 C -0.11 -0.87 5.62 -26.66 -0.15 -1.02 16 22 C 0.08 0.58 3.35 -26.61 -0.09 0.49 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 O -0.56 -4.46 13.24 -35.23 -0.47 -4.93 16 25 C 0.07 0.59 3.83 -26.65 -0.10 0.49 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 F -0.19 -2.39 16.53 2.25 0.04 -2.36 16 28 C 0.02 0.18 4.80 -3.83 -0.02 0.17 16 29 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 30 C -0.19 -4.66 9.74 -39.25 -0.38 -5.04 16 31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 32 H 0.12 3.19 6.56 -52.49 -0.34 2.84 16 33 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 35 H 0.05 0.77 7.65 -51.93 -0.40 0.37 16 36 H 0.37 4.09 9.05 45.56 0.41 4.50 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.58 8.12 -51.93 -0.42 0.15 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 43 H 0.38 1.40 9.09 45.56 0.41 1.82 16 44 H 0.10 1.06 5.88 -51.93 -0.31 0.75 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 1.75 6.27 -52.48 -0.33 1.42 16 47 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -32.37 381.88 -9.42 -41.79 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.46 Total: 9.78 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -3.06 Total: -22.91 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: -0.44 Total: -26.38 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.23 Total: -19.46 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.37 -9.42 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934567182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.867 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds