Wall clock time and date at job start Tue Mar 31 2020 23:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48501 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47079 * 299.99451 * 3 2 1 6 6 H 1.48498 * 109.47211 * 59.99876 * 3 2 1 7 7 C 1.39883 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00634 * 194.28459 * 7 2 1 9 9 C 1.41224 * 119.99873 * 14.28977 * 7 2 1 10 10 C 1.40834 * 120.17688 * 31.37655 * 9 7 2 11 11 C 1.36441 * 119.80819 * 180.27894 * 10 9 7 12 12 C 1.39311 * 120.18777 * 359.47725 * 11 10 9 13 13 O 1.35665 * 119.81985 * 180.27943 * 12 11 10 14 14 C 1.42900 * 117.00006 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.08990 * 109.47136 * 54.99391 * 15 14 13 17 17 O 1.42906 * 109.46762 * 294.99406 * 15 14 13 18 18 C 1.52997 * 109.47203 * 174.99690 * 15 14 13 19 19 N 1.46893 * 109.47338 * 178.42205 * 18 15 14 20 20 C 1.46849 * 111.00584 * 176.46046 * 19 18 15 21 21 C 1.53031 * 109.52804 * 174.16016 * 20 19 18 22 22 C 1.53114 * 109.27739 * 59.17877 * 21 20 19 23 23 H 1.09007 * 109.52493 * 62.25174 * 22 21 20 24 24 O 1.42900 * 109.52545 * 182.37755 * 22 21 20 25 25 C 1.53118 * 109.16276 * 302.34661 * 22 21 20 26 26 H 1.08999 * 109.50721 * 177.59889 * 25 22 21 27 27 F 1.39906 * 109.50487 * 297.67414 * 25 22 21 28 28 C 1.46849 * 111.00034 * 52.24971 * 19 18 15 29 29 C 1.39312 * 120.36042 * 0.30095 * 12 11 10 30 30 C 1.36440 * 120.19049 * 359.95736 * 29 12 11 31 31 H 0.97001 * 120.00102 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.09851 * 0.05658 * 10 9 7 33 33 H 1.08004 * 119.90480 * 179.75999 * 11 10 9 34 34 H 1.09003 * 109.46894 * 299.99461 * 14 13 12 35 35 H 1.08996 * 109.47577 * 59.99700 * 14 13 12 36 36 H 0.96700 * 113.99691 * 300.00278 * 17 15 14 37 37 H 1.09000 * 109.46914 * 298.42160 * 18 15 14 38 38 H 1.09003 * 109.47093 * 58.41940 * 18 15 14 39 39 H 1.09003 * 109.45785 * 294.17879 * 20 19 18 40 40 H 1.09001 * 109.45961 * 54.15274 * 20 19 18 41 41 H 1.08999 * 109.50694 * 179.12277 * 21 20 19 42 42 H 1.09003 * 109.50181 * 299.23855 * 21 20 19 43 43 H 0.96698 * 114.00669 * 180.02562 * 24 22 21 44 44 H 1.08995 * 109.46023 * 305.85558 * 28 19 18 45 45 H 1.08994 * 109.46179 * 65.82211 * 28 19 18 46 46 H 1.08003 * 119.90614 * 179.97438 * 29 12 11 47 47 H 1.07995 * 120.10061 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0632 -1.2258 0.2313 9 6 1.3350 -2.4157 -0.3008 10 6 0.2467 -2.4137 -1.1947 11 6 -0.4020 -3.5806 -1.4761 12 6 0.0162 -4.7734 -0.8904 13 8 -0.6306 -5.9303 -1.1798 14 6 -0.1518 -7.1176 -0.5451 15 6 -0.9987 -8.3113 -0.9909 16 1 -0.9992 -8.3702 -2.0793 17 8 -2.3386 -8.1463 -0.5222 18 6 -0.4105 -9.5991 -0.4108 19 7 -1.2451 -10.7409 -0.8076 20 6 -0.6644 -12.0055 -0.3385 21 6 -1.6288 -13.1545 -0.6411 22 6 -1.8835 -13.2168 -2.1496 23 1 -0.9478 -13.4243 -2.6688 24 8 -2.8264 -14.2527 -2.4324 25 6 -2.4427 -11.8715 -2.6209 26 1 -2.5861 -11.8953 -3.7011 27 9 -3.6689 -11.6293 -1.9923 28 6 -1.4546 -10.7597 -2.2610 29 6 1.0948 -4.7847 -0.0087 30 6 1.7511 -3.6257 0.2874 31 1 -0.4850 0.8400 -0.0004 32 1 -0.0758 -1.4907 -1.6534 33 1 -1.2393 -3.5803 -2.1583 34 1 0.8881 -7.2855 -0.8256 35 1 -0.2226 -7.0053 0.5367 36 1 -2.4140 -8.0863 0.4400 37 1 0.6016 -9.7395 -0.7904 38 1 -0.3841 -9.5288 0.6767 39 1 0.2823 -12.1819 -0.8492 40 1 -0.4923 -11.9495 0.7363 41 1 -1.1908 -14.0950 -0.3068 42 1 -2.5710 -12.9857 -0.1196 43 1 -3.0349 -14.3491 -3.3717 44 1 -1.8564 -9.7988 -2.5823 45 1 -0.5043 -10.9419 -2.7626 46 1 1.4126 -5.7135 0.4415 47 1 2.5872 -3.6362 0.9708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934567182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:16 Heat of formation + Delta-G solvation = -186.508405 kcal Electronic energy + Delta-G solvation = -29115.977501 eV Core-core repulsion = 24791.060142 eV Total energy + Delta-G solvation = -4324.917359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.50525 -40.78066 -40.06804 -38.69760 -37.81617 -36.86082 -35.13761 -33.29469 -31.88316 -31.60758 -31.09009 -30.49646 -27.23226 -26.29804 -24.81573 -24.07039 -22.94536 -22.42597 -21.95888 -20.80991 -19.23929 -18.82755 -18.47067 -17.90157 -17.51563 -17.19338 -17.01775 -16.67275 -16.60634 -16.20743 -15.82723 -15.69217 -15.43680 -15.09415 -14.98239 -14.71767 -14.52385 -14.07767 -14.01068 -13.90854 -13.83056 -13.51303 -13.27165 -13.13086 -12.87282 -12.82670 -12.72884 -12.61284 -12.39362 -12.37539 -11.92885 -11.84180 -11.65212 -11.56439 -11.38311 -11.19962 -10.96259 -10.90174 -10.71814 -9.57796 -9.28985 -8.86167 -8.56545 -6.25166 0.94128 1.00433 1.40083 1.49709 1.54803 2.23989 2.31038 2.75091 2.87472 3.13979 3.41481 3.51572 3.55894 3.66936 3.69946 3.84360 3.91927 4.00246 4.05903 4.13341 4.23440 4.27301 4.33697 4.35197 4.45129 4.49430 4.59446 4.62608 4.74918 4.80347 4.82730 4.85453 4.96304 5.01637 5.05727 5.19360 5.24904 5.29274 5.55062 5.64102 5.85819 5.92507 6.05745 6.06576 6.24959 6.55957 6.77257 6.79818 6.86852 6.96558 7.08722 8.42355 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040321 B = 0.001768 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.262492 B =15833.224428 C =16183.272505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.142 4.142 11 C -0.138 4.138 12 C 0.010 3.990 13 O -0.331 6.331 14 C 0.029 3.971 15 C 0.118 3.882 16 H 0.097 0.903 17 O -0.560 6.560 18 C 0.037 3.963 19 N -0.540 5.540 20 C 0.059 3.941 21 C -0.111 4.111 22 C 0.082 3.918 23 H 0.095 0.905 24 O -0.577 6.577 25 C 0.060 3.940 26 H 0.109 0.891 27 F -0.219 7.219 28 C 0.021 3.979 29 C -0.168 4.168 30 C -0.199 4.199 31 H 0.285 0.715 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.384 0.616 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.396 0.604 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -25.207 -3.765 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.053 3.947 10 C -0.162 4.162 11 C -0.157 4.157 12 C -0.034 4.034 13 O -0.247 6.247 14 C -0.047 4.047 15 C 0.058 3.942 16 H 0.115 0.885 17 O -0.366 6.366 18 C -0.091 4.091 19 N -0.266 5.266 20 C -0.068 4.068 21 C -0.149 4.149 22 C 0.023 3.977 23 H 0.113 0.887 24 O -0.385 6.385 25 C 0.024 3.976 26 H 0.126 0.874 27 F -0.200 7.200 28 C -0.107 4.107 29 C -0.186 4.186 30 C -0.218 4.218 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.246 0.754 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.150 0.850 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.437 -25.135 -3.626 25.399 hybrid contribution 0.939 1.131 -0.175 1.480 sum 0.502 -24.004 -3.801 24.308 Atomic orbital electron populations 1.69887 1.08893 1.30213 1.37967 1.26703 0.95523 1.04381 0.91540 0.85159 0.79380 0.76423 0.78706 1.18086 1.19165 1.19348 1.19681 0.97006 0.91877 1.44838 0.90590 1.17955 0.92722 0.93521 0.90529 1.20785 0.99561 0.95815 1.00003 1.20006 1.01519 0.91117 1.03064 1.18693 0.96573 0.85586 1.02550 1.85883 1.56845 1.14234 1.67743 1.23519 0.99100 0.84286 0.97792 1.21927 0.82060 0.90398 0.99791 0.88479 1.86611 1.26289 1.95692 1.28055 1.22618 0.95209 0.88966 1.02271 1.61722 1.49182 1.02884 1.12773 1.22141 0.95460 0.87256 1.01988 1.21512 1.00432 0.99040 0.93952 1.22525 0.92367 0.85078 0.97779 0.88700 1.86534 1.64561 1.54899 1.32535 1.22627 0.80625 0.96455 0.97929 0.87355 1.92809 1.46470 1.95592 1.85167 1.22775 0.99133 0.99612 0.89199 1.20731 0.97721 0.98821 1.01350 1.20890 1.03817 0.93092 1.04035 0.90451 0.88048 0.87566 0.90850 0.91666 0.76792 0.91694 0.88470 0.92633 0.88898 0.89137 0.92423 0.75429 0.90060 0.90846 0.84991 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.40 11.22 21.82 0.24 -45.15 16 2 C 0.03 1.60 5.16 85.23 0.44 2.04 16 3 Si 0.98 38.96 29.58 68.60 2.03 40.99 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -27.35 9.02 23.40 0.21 -27.14 16 8 H 0.08 3.96 7.88 -2.91 -0.02 3.94 16 9 C 0.05 2.98 5.50 -21.28 -0.12 2.86 16 10 C -0.14 -7.66 8.59 22.49 0.19 -7.47 16 11 C -0.14 -6.80 9.92 22.11 0.22 -6.58 16 12 C 0.01 0.44 6.71 22.79 0.15 0.60 16 13 O -0.33 -12.81 10.09 -85.18 -0.86 -13.67 16 14 C 0.03 0.78 4.36 71.98 0.31 1.09 16 15 C 0.12 2.59 2.66 30.60 0.08 2.68 16 16 H 0.10 2.26 6.29 -2.39 -0.02 2.25 16 17 O -0.56 -14.95 13.14 -144.35 -1.90 -16.85 16 18 C 0.04 0.56 4.79 86.30 0.41 0.97 16 19 N -0.54 -8.78 4.54 -896.39 -4.07 -12.85 16 20 C 0.06 0.70 5.46 86.32 0.47 1.17 16 21 C -0.11 -1.57 5.62 30.64 0.17 -1.39 16 22 C 0.08 1.02 3.35 30.67 0.10 1.12 16 23 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 24 O -0.58 -8.33 13.24 -148.98 -1.97 -10.30 16 25 C 0.06 0.92 3.83 30.65 0.12 1.04 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 F -0.22 -5.50 16.53 44.97 0.74 -4.76 16 28 C 0.02 0.33 4.80 86.32 0.41 0.74 16 29 C -0.17 -7.12 8.96 22.11 0.20 -6.92 16 30 C -0.20 -9.57 9.74 22.48 0.22 -9.35 16 31 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 32 H 0.10 5.70 6.56 -2.91 -0.02 5.69 16 33 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.07 1.73 7.65 -2.39 -0.02 1.71 16 35 H 0.07 1.62 7.65 -2.39 -0.02 1.61 16 36 H 0.38 8.01 9.05 -74.06 -0.67 7.34 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.15 7.91 -2.39 -0.02 1.13 16 43 H 0.40 2.24 9.09 -74.06 -0.67 1.57 16 44 H 0.08 1.60 5.88 -2.39 -0.01 1.59 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.13 4.49 6.27 -2.91 -0.02 4.47 16 47 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -71.83 381.88 -2.51 -74.34 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.34 Total: 32.80 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 3.60 Total: -44.55 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -3.82 Total: -58.00 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -4.73 Total: -40.82 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.74 Total: -4.76 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -71.83 -2.51 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934567182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.169 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds