Wall clock time and date at job start Tue Mar 31 2020 23:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99778 * 2 1 4 4 H 1.48500 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46818 * 299.99488 * 3 2 1 6 6 H 1.48495 * 109.47196 * 59.99549 * 3 2 1 7 7 C 1.38807 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 194.60895 * 7 2 1 9 9 N 1.36936 * 119.99744 * 14.61198 * 7 2 1 10 10 C 1.47608 * 118.64321 * 27.72356 * 9 7 2 11 11 C 1.53942 * 112.14342 * 137.86328 * 10 9 7 12 12 C 1.50879 * 110.09773 * 319.44600 * 11 10 9 13 13 C 1.52565 * 109.35592 * 91.88350 * 12 11 10 14 14 C 1.47153 * 114.34300 * 275.00115 * 13 12 11 15 15 C 1.44588 * 118.64283 * 207.75052 * 9 7 2 16 16 H 1.08996 * 109.44825 * 150.70167 * 15 9 7 17 17 C 1.53000 * 109.44686 * 30.75264 * 15 9 7 18 18 N 1.46503 * 109.46849 * 55.00321 * 17 15 9 19 19 C 1.34783 * 119.99684 * 179.97438 * 18 17 15 20 20 O 1.21546 * 119.99960 * 0.02562 * 19 18 17 21 21 C 1.47883 * 119.99795 * 179.97438 * 19 18 17 22 22 N 1.32839 * 119.72354 * 0.02562 * 21 19 18 23 23 C 1.31362 * 121.69130 * 179.97438 * 22 21 19 24 24 C 1.39000 * 120.93364 * 0.27721 * 23 22 21 25 25 F 1.35106 * 120.33184 * 179.70254 * 24 23 22 26 26 C 1.38722 * 119.34049 * 359.47381 * 24 23 22 27 27 C 1.38840 * 118.44765 * 0.51541 * 26 24 23 28 28 F 1.35099 * 120.48489 * 179.70919 * 27 26 24 29 29 H 0.96996 * 120.00292 * 0.02562 * 1 2 3 30 30 H 1.08996 * 108.95154 * 258.55438 * 10 9 7 31 31 H 1.09003 * 108.94091 * 17.27140 * 10 9 7 32 32 H 1.09001 * 109.36643 * 79.63145 * 11 10 9 33 33 H 1.08997 * 109.36840 * 199.37795 * 11 10 9 34 34 H 1.08998 * 109.49487 * 211.85060 * 12 11 10 35 35 H 1.09009 * 109.48925 * 331.89839 * 12 11 10 36 36 H 1.09003 * 108.50777 * 36.22987 * 13 12 11 37 37 H 1.08995 * 108.51705 * 153.87883 * 13 12 11 38 38 H 1.09002 * 109.30924 * 302.52414 * 14 13 12 39 39 H 1.09003 * 109.35021 * 183.04168 * 14 13 12 40 40 H 1.08993 * 109.47329 * 295.00105 * 17 15 9 41 41 H 1.08996 * 109.46799 * 174.99891 * 17 15 9 42 42 H 0.97001 * 120.00742 * 359.97438 * 18 17 15 43 43 H 1.08000 * 119.53687 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.77924 * 180.21702 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0642 -1.2170 0.2364 9 7 1.3589 -2.3689 -0.2981 10 6 0.1769 -2.3136 -1.1805 11 6 0.1658 -3.4597 -2.2081 12 6 1.5572 -3.6882 -2.7451 13 6 2.2583 -4.7466 -1.8990 14 6 2.9100 -4.2216 -0.6886 15 6 1.8570 -3.6043 0.2644 16 1 1.0308 -4.3033 0.3935 17 6 2.5025 -3.3218 1.6225 18 7 1.5408 -2.6322 2.4862 19 6 1.8915 -2.2812 3.7394 20 8 3.0057 -2.5363 4.1527 21 6 0.9210 -1.5846 4.6110 22 7 -0.2950 -1.3080 4.1535 23 6 -1.1874 -0.6913 4.8944 24 6 -0.8883 -0.2970 6.1933 25 9 -1.8134 0.3419 6.9426 26 6 0.3680 -0.5701 6.7143 27 6 1.2907 -1.2231 5.9081 28 9 2.5281 -1.5043 6.3717 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7238 -2.3768 -0.5700 31 1 0.1772 -1.3625 -1.7130 32 1 -0.1908 -4.3715 -1.7289 33 1 -0.4994 -3.2004 -3.0317 34 1 1.4968 -4.0299 -3.7784 35 1 2.1209 -2.7561 -2.7027 36 1 1.5227 -5.4931 -1.5994 37 1 3.0150 -5.2350 -2.5129 38 1 3.6331 -3.4566 -0.9716 39 1 3.4282 -5.0326 -0.1768 40 1 3.3818 -2.6930 1.4832 41 1 2.7983 -4.2625 2.0868 42 1 0.6517 -2.4282 2.1563 43 1 -2.1661 -0.4842 4.4873 44 1 0.6241 -0.2774 7.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968916686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:01 Heat of formation + Delta-G solvation = -65.914643 kcal Electronic energy + Delta-G solvation = -30689.939626 eV Core-core repulsion = 26279.084051 eV Total energy + Delta-G solvation = -4410.855575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.31104 -48.99546 -40.29570 -38.81370 -37.86870 -34.52397 -33.48348 -32.66405 -31.71483 -30.89036 -30.60415 -27.10582 -25.76586 -24.66945 -23.79144 -23.43235 -22.12105 -20.37678 -19.72682 -19.16868 -18.35816 -18.17336 -17.74560 -16.39671 -16.20897 -15.91441 -15.61031 -15.46080 -15.35955 -14.85747 -14.58988 -14.42926 -14.38867 -14.03290 -13.55160 -13.43284 -13.36796 -13.12250 -12.91216 -12.65282 -12.50187 -12.05878 -11.94344 -11.47755 -11.23663 -11.07813 -10.86312 -10.57061 -10.20075 -10.17758 -10.03145 -10.02254 -9.97101 -9.68734 -9.62515 -9.54560 -9.37116 -9.04213 -8.40356 -8.22944 -6.67593 -5.79560 -3.23592 0.30353 0.73279 2.81700 3.34356 3.35629 3.43875 3.46679 3.61987 3.80743 3.92459 4.13721 4.38732 4.48167 4.66485 4.97955 5.21441 5.29295 5.36945 5.45040 5.49578 5.55661 5.58575 5.65679 5.89673 6.02609 6.08467 6.15238 6.26858 6.33289 6.39260 6.57165 6.62111 6.66428 6.71018 6.76221 6.86179 6.99888 7.09786 7.17613 7.43896 7.45855 7.70003 7.84487 8.24122 8.44532 8.78328 9.22570 9.87080 10.32177 11.26817 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.004114 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.977650 B = 6803.999122 C = 7490.820904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.015 3.985 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.126 3.874 18 N -0.661 5.661 19 C 0.560 3.440 20 O -0.545 6.545 21 C 0.051 3.949 22 N -0.382 5.382 23 C 0.070 3.930 24 C 0.093 3.907 25 F -0.120 7.120 26 C -0.162 4.162 27 C 0.134 3.866 28 F -0.098 7.098 29 H 0.251 0.749 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.423 0.577 43 H 0.182 0.818 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -4.855 7.150 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.002 3.998 18 N -0.310 5.310 19 C 0.343 3.657 20 O -0.424 6.424 21 C -0.089 4.089 22 N -0.091 5.091 23 C -0.092 4.092 24 C 0.071 3.929 25 F -0.099 7.099 26 C -0.189 4.189 27 C 0.111 3.889 28 F -0.076 7.076 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.262 0.738 43 H 0.198 0.802 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.630 -5.178 6.560 8.762 hybrid contribution 0.236 1.615 0.900 1.864 sum -2.394 -3.563 7.460 8.607 Atomic orbital electron populations 1.70034 1.04813 1.25066 1.53934 1.24894 0.95139 0.97762 1.00648 0.86446 0.79729 0.84875 0.77096 1.20382 1.21692 1.22053 1.19037 0.91993 0.84504 1.42578 0.91958 1.43712 1.32631 1.01625 1.52528 1.21004 0.88176 0.95461 0.89722 1.22075 0.96082 1.00532 0.99536 1.20947 0.97108 0.99817 0.96534 1.20294 0.98894 0.97932 0.96692 1.21385 0.99544 0.99759 0.96998 1.20506 0.94003 0.89615 0.89453 0.93654 1.21606 0.92801 0.95295 0.90128 1.45561 1.18732 1.55645 1.11035 1.17429 0.85765 0.79894 0.82605 1.90801 1.20386 1.56338 1.74832 1.21775 0.93477 1.01512 0.92108 1.67865 0.99914 1.07999 1.33341 1.23133 1.00665 0.96634 0.88808 1.18797 0.86847 0.96120 0.91151 1.91560 1.63997 1.78692 1.75624 1.21596 0.92408 1.02226 1.02660 1.18354 0.81546 0.96891 0.92123 1.91641 1.37466 1.90471 1.88049 0.93884 0.95679 0.90752 0.93828 0.93311 0.94262 0.90765 0.93521 0.94121 0.91788 0.93297 0.90998 0.92791 0.73832 0.80151 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.27 11.03 55.49 0.61 -22.66 16 2 C 0.01 0.38 4.89 -17.43 -0.09 0.29 16 3 Si 0.89 21.26 29.58 -169.99 -5.03 16.23 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.25 -6.12 7.65 -15.06 -0.12 -6.24 16 8 H 0.06 1.59 6.71 -52.49 -0.35 1.24 16 9 N -0.58 -12.49 1.78 -164.46 -0.29 -12.78 16 10 C 0.18 3.86 4.66 -2.94 -0.01 3.85 16 11 C -0.14 -2.51 5.71 -27.30 -0.16 -2.66 16 12 C -0.11 -1.78 5.51 -28.02 -0.15 -1.93 16 13 C -0.10 -1.55 5.16 -29.76 -0.15 -1.70 16 14 C -0.14 -2.24 5.07 -28.56 -0.14 -2.39 16 15 C 0.17 3.21 2.19 -67.97 -0.15 3.06 16 16 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 17 C 0.13 2.39 4.52 -4.04 -0.02 2.37 16 18 N -0.66 -13.17 4.71 -61.24 -0.29 -13.46 16 19 C 0.56 11.28 7.80 -12.31 -0.10 11.18 16 20 O -0.54 -12.01 15.31 5.33 0.08 -11.93 16 21 C 0.05 0.90 6.75 -82.96 -0.56 0.34 16 22 N -0.38 -6.35 9.53 -9.70 -0.09 -6.45 16 23 C 0.07 0.92 11.17 -17.47 -0.20 0.72 16 24 C 0.09 1.10 7.35 -39.12 -0.29 0.81 16 25 F -0.12 -1.31 17.28 2.25 0.04 -1.27 16 26 C -0.16 -1.92 10.14 -39.18 -0.40 -2.32 16 27 C 0.13 2.05 7.31 -38.84 -0.28 1.77 16 28 F -0.10 -1.63 15.54 2.25 0.04 -1.59 16 29 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 31 H 0.07 1.81 6.40 -51.93 -0.33 1.48 16 32 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.43 7.48 -51.92 -0.39 1.04 16 36 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.07 1.50 6.83 -51.93 -0.35 1.15 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.42 8.87 7.40 -40.82 -0.30 8.57 16 43 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 44 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -27.33 360.79 -8.15 -35.48 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.84 Total: 5.84 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.81 Total: 7.16 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.06 Total: -55.35 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.33 -8.15 -35.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968916686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.432 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds