Wall clock time and date at job start Tue Mar 31 2020 23:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99778 * 2 1 4 4 H 1.48500 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46818 * 299.99488 * 3 2 1 6 6 H 1.48495 * 109.47196 * 59.99549 * 3 2 1 7 7 C 1.38807 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 194.60895 * 7 2 1 9 9 N 1.36936 * 119.99744 * 14.61198 * 7 2 1 10 10 C 1.47608 * 118.64321 * 27.72356 * 9 7 2 11 11 C 1.53942 * 112.14342 * 137.86328 * 10 9 7 12 12 C 1.50879 * 110.09773 * 319.44600 * 11 10 9 13 13 C 1.52565 * 109.35592 * 91.88350 * 12 11 10 14 14 C 1.47153 * 114.34300 * 275.00115 * 13 12 11 15 15 C 1.44588 * 118.64283 * 207.75052 * 9 7 2 16 16 H 1.08996 * 109.44825 * 150.70167 * 15 9 7 17 17 C 1.53000 * 109.44686 * 30.75264 * 15 9 7 18 18 N 1.46503 * 109.46849 * 55.00321 * 17 15 9 19 19 C 1.34783 * 119.99684 * 179.97438 * 18 17 15 20 20 O 1.21546 * 119.99960 * 0.02562 * 19 18 17 21 21 C 1.47883 * 119.99795 * 179.97438 * 19 18 17 22 22 N 1.32839 * 119.72354 * 0.02562 * 21 19 18 23 23 C 1.31362 * 121.69130 * 179.97438 * 22 21 19 24 24 C 1.39000 * 120.93364 * 0.27721 * 23 22 21 25 25 F 1.35106 * 120.33184 * 179.70254 * 24 23 22 26 26 C 1.38722 * 119.34049 * 359.47381 * 24 23 22 27 27 C 1.38840 * 118.44765 * 0.51541 * 26 24 23 28 28 F 1.35099 * 120.48489 * 179.70919 * 27 26 24 29 29 H 0.96996 * 120.00292 * 0.02562 * 1 2 3 30 30 H 1.08996 * 108.95154 * 258.55438 * 10 9 7 31 31 H 1.09003 * 108.94091 * 17.27140 * 10 9 7 32 32 H 1.09001 * 109.36643 * 79.63145 * 11 10 9 33 33 H 1.08997 * 109.36840 * 199.37795 * 11 10 9 34 34 H 1.08998 * 109.49487 * 211.85060 * 12 11 10 35 35 H 1.09009 * 109.48925 * 331.89839 * 12 11 10 36 36 H 1.09003 * 108.50777 * 36.22987 * 13 12 11 37 37 H 1.08995 * 108.51705 * 153.87883 * 13 12 11 38 38 H 1.09002 * 109.30924 * 302.52414 * 14 13 12 39 39 H 1.09003 * 109.35021 * 183.04168 * 14 13 12 40 40 H 1.08993 * 109.47329 * 295.00105 * 17 15 9 41 41 H 1.08996 * 109.46799 * 174.99891 * 17 15 9 42 42 H 0.97001 * 120.00742 * 359.97438 * 18 17 15 43 43 H 1.08000 * 119.53687 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.77924 * 180.21702 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0642 -1.2170 0.2364 9 7 1.3589 -2.3689 -0.2981 10 6 0.1769 -2.3136 -1.1805 11 6 0.1658 -3.4597 -2.2081 12 6 1.5572 -3.6882 -2.7451 13 6 2.2583 -4.7466 -1.8990 14 6 2.9100 -4.2216 -0.6886 15 6 1.8570 -3.6043 0.2644 16 1 1.0308 -4.3033 0.3935 17 6 2.5025 -3.3218 1.6225 18 7 1.5408 -2.6322 2.4862 19 6 1.8915 -2.2812 3.7394 20 8 3.0057 -2.5363 4.1527 21 6 0.9210 -1.5846 4.6110 22 7 -0.2950 -1.3080 4.1535 23 6 -1.1874 -0.6913 4.8944 24 6 -0.8883 -0.2970 6.1933 25 9 -1.8134 0.3419 6.9426 26 6 0.3680 -0.5701 6.7143 27 6 1.2907 -1.2231 5.9081 28 9 2.5281 -1.5043 6.3717 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7238 -2.3768 -0.5700 31 1 0.1772 -1.3625 -1.7130 32 1 -0.1908 -4.3715 -1.7289 33 1 -0.4994 -3.2004 -3.0317 34 1 1.4968 -4.0299 -3.7784 35 1 2.1209 -2.7561 -2.7027 36 1 1.5227 -5.4931 -1.5994 37 1 3.0150 -5.2350 -2.5129 38 1 3.6331 -3.4566 -0.9716 39 1 3.4282 -5.0326 -0.1768 40 1 3.3818 -2.6930 1.4832 41 1 2.7983 -4.2625 2.0868 42 1 0.6517 -2.4282 2.1563 43 1 -2.1661 -0.4842 4.4873 44 1 0.6241 -0.2774 7.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968916686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:00 Heat of formation + Delta-G solvation = -80.854055 kcal Electronic energy + Delta-G solvation = -30690.587447 eV Core-core repulsion = 26279.084051 eV Total energy + Delta-G solvation = -4411.503396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.27220 -50.21406 -41.55501 -40.27833 -39.38880 -36.03935 -35.21328 -33.84762 -33.12469 -32.43691 -32.03025 -28.69059 -27.37004 -25.89315 -25.17896 -24.92474 -23.54875 -21.85216 -21.14956 -20.76246 -19.52521 -19.35714 -19.07806 -17.85629 -17.52807 -17.23419 -17.06485 -16.82455 -16.60140 -16.27225 -16.08711 -15.86474 -15.70022 -15.51245 -15.18655 -14.88480 -14.56367 -14.43261 -14.34432 -14.05397 -13.68144 -13.64856 -13.37569 -13.13702 -12.88574 -12.82981 -12.71680 -12.34602 -11.98766 -11.53334 -11.50337 -11.36509 -11.29908 -11.17253 -11.09115 -11.02767 -10.79417 -10.32247 -10.24519 -9.79309 -8.50395 -7.75211 -5.17558 -0.86289 -0.32043 1.37742 1.44702 1.49517 1.50969 2.06773 2.46357 2.48113 2.53990 2.77228 2.97614 3.39293 3.39587 3.50078 3.63721 3.86624 4.07177 4.10755 4.18997 4.29624 4.37781 4.45882 4.52065 4.58626 4.63669 4.68834 4.82023 5.04019 5.09369 5.16454 5.24351 5.27914 5.30107 5.41394 5.45451 5.56918 5.61272 5.71535 5.79055 5.83275 5.95604 6.28968 6.51174 6.68192 7.20411 7.30977 8.04701 8.43118 9.28074 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.004114 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.977650 B = 6803.999122 C = 7490.820904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.023 4.023 3 Si 0.924 3.076 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.303 1.303 7 C -0.233 4.233 8 H 0.047 0.953 9 N -0.587 5.587 10 C 0.191 3.809 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.173 3.827 16 H 0.057 0.943 17 C 0.128 3.872 18 N -0.665 5.665 19 C 0.554 3.446 20 O -0.574 6.574 21 C 0.021 3.979 22 N -0.410 5.410 23 C 0.072 3.928 24 C 0.115 3.885 25 F -0.107 7.107 26 C -0.141 4.141 27 C 0.125 3.875 28 F -0.110 7.110 29 H 0.244 0.756 30 H 0.002 0.998 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.418 0.582 43 H 0.206 0.794 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 -5.940 7.733 10.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.220 4.220 3 Si 0.756 3.244 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.231 1.231 7 C -0.364 4.364 8 H 0.065 0.935 9 N -0.310 5.310 10 C 0.066 3.934 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.065 3.935 16 H 0.075 0.925 17 C 0.004 3.996 18 N -0.312 5.312 19 C 0.338 3.662 20 O -0.455 6.455 21 C -0.117 4.117 22 N -0.120 5.120 23 C -0.091 4.091 24 C 0.093 3.907 25 F -0.085 7.085 26 C -0.167 4.167 27 C 0.102 3.898 28 F -0.088 7.088 29 H 0.054 0.946 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.255 0.745 43 H 0.223 0.777 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.424 -6.289 7.131 10.106 hybrid contribution 0.424 1.969 0.791 2.164 sum -3.000 -4.320 7.922 9.509 Atomic orbital electron populations 1.70118 1.05129 1.24622 1.55574 1.25218 0.95621 0.99123 1.02022 0.85879 0.78803 0.83388 0.76354 1.20779 1.21877 1.23095 1.18955 0.91280 0.85604 1.40598 0.93523 1.43758 1.32375 1.01841 1.52986 1.20769 0.87120 0.95632 0.89868 1.21943 0.97237 0.99263 0.98690 1.20907 0.95987 0.98937 0.98269 1.20281 0.99706 0.97677 0.96089 1.21292 0.98455 0.99787 0.97251 1.20687 0.94868 0.88486 0.89470 0.92527 1.21621 0.91858 0.95478 0.90649 1.45622 1.18448 1.55838 1.11303 1.17884 0.86026 0.79488 0.82764 1.90760 1.21687 1.57619 1.75411 1.21426 0.93828 1.03622 0.92865 1.67789 1.00129 1.09417 1.34635 1.23571 1.00880 0.95416 0.89270 1.18648 0.86787 0.94746 0.90518 1.91608 1.63524 1.78178 1.75184 1.21860 0.91276 1.00039 1.03560 1.18468 0.81780 0.97707 0.91890 1.91608 1.38370 1.90761 1.88046 0.94590 0.97974 0.94229 0.92238 0.92153 0.91888 0.93919 0.92007 0.91944 0.93892 0.90768 0.93509 0.90938 0.74487 0.77701 0.78181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.64 11.03 21.65 0.24 -48.40 16 2 C -0.02 -1.20 4.89 84.86 0.41 -0.78 16 3 Si 0.92 44.79 29.58 68.60 2.03 46.82 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 7 C -0.23 -11.69 7.65 84.03 0.64 -11.05 16 8 H 0.05 2.48 6.71 -2.91 -0.02 2.46 16 9 N -0.59 -25.49 1.78 -674.24 -1.20 -26.69 16 10 C 0.19 8.24 4.66 86.49 0.40 8.64 16 11 C -0.13 -4.42 5.71 30.22 0.17 -4.25 16 12 C -0.10 -3.23 5.51 29.76 0.16 -3.07 16 13 C -0.10 -2.78 5.16 28.63 0.15 -2.63 16 14 C -0.13 -3.98 5.07 29.41 0.15 -3.83 16 15 C 0.17 6.29 2.19 45.98 0.10 6.39 16 16 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 17 C 0.13 4.92 4.52 86.38 0.39 5.31 16 18 N -0.66 -27.22 4.71 -465.94 -2.19 -29.41 16 19 C 0.55 23.00 7.80 86.80 0.68 23.68 16 20 O -0.57 -26.14 15.31 -3.86 -0.06 -26.20 16 21 C 0.02 0.73 6.75 41.88 0.28 1.02 16 22 N -0.41 -13.63 9.53 -184.61 -1.76 -15.39 16 23 C 0.07 1.76 11.17 84.95 0.95 2.71 16 24 C 0.12 2.39 7.35 22.57 0.17 2.56 16 25 F -0.11 -1.94 17.28 44.97 0.78 -1.16 16 26 C -0.14 -2.98 10.14 22.53 0.23 -2.75 16 27 C 0.12 3.75 7.31 22.75 0.17 3.92 16 28 F -0.11 -3.63 15.54 44.97 0.70 -2.94 16 29 H 0.24 13.06 8.31 -92.71 -0.77 12.29 16 30 H 0.00 0.10 8.02 -2.39 -0.02 0.08 16 31 H 0.04 1.97 6.40 -2.39 -0.02 1.96 16 32 H 0.06 1.81 7.32 -2.39 -0.02 1.80 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.61 7.48 -2.38 -0.02 1.59 16 36 H 0.06 1.57 7.36 -2.39 -0.02 1.55 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 40 H 0.05 2.02 6.83 -2.39 -0.02 2.01 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.42 18.04 7.40 -92.71 -0.69 17.35 16 43 H 0.21 3.85 8.06 -2.91 -0.02 3.82 16 44 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -61.70 360.79 3.95 -57.76 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.36 Total: 19.72 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.05 Total: 25.88 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -4.91 Total: -119.89 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.48 Total: -4.09 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -61.70 3.95 -57.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968916686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.096 kcal (2) G-P(sol) polarization free energy of solvation -61.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds