Wall clock time and date at job start Tue Mar 31 2020 23:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48496 * 109.47175 * 269.99610 * 3 2 1 5 5 H 1.48495 * 109.46966 * 29.99854 * 3 2 1 6 6 H 1.48500 * 109.47228 * 149.99773 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99961 * 168.77529 * 7 2 1 9 9 N 1.36937 * 120.00137 * 348.50591 * 7 2 1 10 10 C 1.46919 * 120.62880 * 328.90699 * 9 7 2 11 11 C 1.53195 * 108.77652 * 233.58540 * 10 9 7 12 12 C 1.53039 * 109.31178 * 305.36625 * 11 10 9 13 13 C 1.53039 * 109.53817 * 61.36502 * 12 11 10 14 14 C 1.46918 * 120.63047 * 148.62678 * 9 7 2 15 15 H 1.09007 * 109.59027 * 246.20111 * 14 9 7 16 16 C 1.53005 * 109.58986 * 6.62691 * 14 9 7 17 17 N 1.46503 * 109.46819 * 300.11354 * 16 14 9 18 18 C 1.34773 * 119.99755 * 179.97438 * 17 16 14 19 19 O 1.21555 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.47844 * 119.99989 * 180.02562 * 18 17 16 21 21 C 1.40020 * 120.55778 * 359.71892 * 20 18 17 22 22 C 1.38355 * 118.28733 * 179.73594 * 21 20 18 23 23 C 1.38348 * 119.30363 * 0.53818 * 22 21 20 24 24 N 1.31933 * 121.07924 * 359.72749 * 23 22 21 25 25 C 1.31691 * 121.87886 * 359.97438 * 24 23 22 26 26 C 1.50695 * 119.71835 * 179.97438 * 25 24 23 27 27 F 1.39895 * 109.47204 * 120.02102 * 26 25 24 28 28 F 1.39894 * 109.47375 * 240.02533 * 26 25 24 29 29 H 0.97000 * 120.00378 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58897 * 353.37177 * 10 9 7 31 31 H 1.09003 * 109.59131 * 113.65183 * 10 9 7 32 32 H 1.09004 * 109.49326 * 65.31409 * 11 10 9 33 33 H 1.08997 * 109.49625 * 185.37757 * 11 10 9 34 34 H 1.09000 * 109.45469 * 181.38268 * 12 11 10 35 35 H 1.08998 * 109.45995 * 301.35490 * 12 11 10 36 36 H 1.08999 * 109.49845 * 58.58389 * 13 12 11 37 37 H 1.08995 * 109.49972 * 178.65107 * 13 12 11 38 38 H 1.08999 * 109.47114 * 60.11046 * 16 14 9 39 39 H 1.08998 * 109.46924 * 180.11200 * 16 14 9 40 40 H 0.96994 * 119.99882 * 359.97438 * 17 16 14 41 41 H 1.07999 * 120.85843 * 359.97438 * 21 20 18 42 42 H 1.08007 * 120.34906 * 180.28243 * 22 21 20 43 43 H 1.08000 * 119.46171 * 179.69608 * 23 22 21 44 44 H 1.09010 * 109.46798 * 0.02718 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0748 -1.2112 -0.1815 9 7 1.3462 -2.3761 0.2374 10 6 0.1677 -2.4057 1.1142 11 6 0.3851 -3.4676 2.1968 12 6 0.7087 -4.8081 1.5332 13 6 1.9976 -4.6780 0.7184 14 6 1.7950 -3.6288 -0.3854 15 1 1.0403 -3.9773 -1.0905 16 6 3.1164 -3.3921 -1.1194 17 7 2.9244 -2.3728 -2.1541 18 6 3.9595 -1.9991 -2.9322 19 8 5.0524 -2.5075 -2.7751 20 6 3.7659 -0.9701 -3.9759 21 6 2.5109 -0.3803 -4.1701 22 6 2.3841 0.5817 -5.1564 23 6 3.4877 0.9187 -5.9194 24 7 4.6571 0.3421 -5.7177 25 6 4.8294 -0.5743 -4.7877 26 6 6.1866 -1.2018 -4.5996 27 9 6.6392 -0.9530 -3.2994 28 9 6.0945 -2.5824 -4.8051 29 1 -0.4851 0.8400 -0.0004 30 1 0.0350 -1.4297 1.5811 31 1 -0.7175 -2.6539 0.5285 32 1 1.2150 -3.1692 2.8376 33 1 -0.5199 -3.5667 2.7961 34 1 0.8397 -5.5709 2.3007 35 1 -0.1106 -5.0937 0.8734 36 1 2.8121 -4.3682 1.3731 37 1 2.2403 -5.6392 0.2655 38 1 3.8704 -3.0518 -0.4097 39 1 3.4465 -4.3220 -1.5823 40 1 2.0524 -1.9669 -2.2791 41 1 1.6647 -0.6661 -3.5630 42 1 1.4324 1.0614 -5.3315 43 1 3.3904 1.6657 -6.6933 44 1 6.8873 -0.7735 -5.3164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024545723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:26 Heat of formation + Delta-G solvation = -72.891917 kcal Electronic energy + Delta-G solvation = -31235.372171 eV Core-core repulsion = 26824.214039 eV Total energy + Delta-G solvation = -4411.158132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.51153 -46.49298 -40.52561 -38.88340 -37.63719 -34.34997 -33.15117 -32.91208 -32.09207 -30.62249 -29.94281 -26.99544 -25.97267 -25.01175 -24.06513 -22.29734 -22.16025 -20.82531 -20.20219 -19.17736 -18.01904 -17.38867 -17.18005 -16.81246 -16.28229 -15.99404 -15.68172 -15.11549 -14.93505 -14.63741 -14.13360 -14.11534 -13.93834 -13.47880 -13.45017 -13.23074 -13.06817 -12.94547 -12.84488 -12.76164 -12.45385 -12.08300 -11.97451 -11.77427 -11.25154 -11.11884 -11.02642 -10.82466 -10.60751 -10.34529 -10.19952 -10.04361 -9.99564 -9.92271 -9.61411 -9.49288 -9.30813 -9.27499 -8.66362 -8.27902 -6.72960 -5.92399 -3.40019 0.55490 1.01672 3.09879 3.23878 3.33611 3.40074 3.48930 3.59796 3.86575 4.30741 4.34999 4.48420 4.71994 4.80484 4.98950 5.15686 5.18563 5.24356 5.32416 5.33951 5.46104 5.47507 5.61349 5.64570 5.88332 5.93268 5.98769 6.01940 6.11600 6.26114 6.33364 6.36363 6.39473 6.56737 6.67295 6.70180 6.82058 6.92892 7.07606 7.34552 7.60209 7.62212 7.71238 8.10898 8.33289 8.71380 9.08647 9.69521 10.27760 11.13338 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004823 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.609760 B = 5804.624563 C = 7058.948933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.683 5.683 18 C 0.543 3.457 19 O -0.529 6.529 20 C -0.137 4.137 21 C -0.038 4.038 22 C -0.157 4.157 23 C 0.111 3.889 24 N -0.468 5.468 25 C 0.092 3.908 26 C 0.341 3.659 27 F -0.181 7.181 28 F -0.184 7.184 29 H 0.254 0.746 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.413 0.587 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.166 0.834 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 -2.235 -8.681 9.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.335 5.335 18 C 0.327 3.673 19 O -0.408 6.408 20 C -0.142 4.142 21 C -0.064 4.064 22 C -0.177 4.177 23 C -0.046 4.046 24 N -0.176 5.176 25 C -0.049 4.049 26 C 0.286 3.714 27 F -0.162 7.162 28 F -0.165 7.165 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.251 0.749 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.183 0.817 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.798 -2.249 -9.029 10.050 hybrid contribution -0.965 1.026 0.705 1.575 sum 2.833 -1.224 -8.324 8.878 Atomic orbital electron populations 1.69979 1.05024 1.25475 1.53908 1.25059 0.95204 0.97915 1.00857 0.86512 0.79574 0.84193 0.77995 1.21310 1.21446 1.20352 1.19241 0.91470 0.83735 1.43465 0.91241 1.44092 1.32868 1.02650 1.51702 1.20792 0.87883 0.97385 0.89238 1.22196 0.99828 0.96681 0.99646 1.21360 0.97358 0.97400 0.98372 1.22006 0.98048 0.98133 0.98469 1.20841 0.92910 0.88637 0.92353 0.94975 1.21331 0.98413 0.89729 0.89326 1.45870 1.13017 1.40931 1.33652 1.17883 0.85228 0.82409 0.81746 1.90829 1.24181 1.55562 1.70241 1.20988 0.94833 0.99764 0.98607 1.22053 0.96854 0.92616 0.94866 1.22269 1.01098 0.98061 0.96285 1.22892 0.87303 0.96800 0.97605 1.67283 1.25917 1.07339 1.17103 1.21826 0.95653 0.94661 0.92720 1.19720 0.91308 0.77789 0.82548 1.93055 1.89339 1.93813 1.40038 1.93027 1.96937 1.31757 1.94773 0.93562 0.89449 0.96404 0.92845 0.93555 0.93710 0.92904 0.92015 0.93009 0.91265 0.92285 0.74864 0.82865 0.83504 0.81665 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.25 11.08 55.49 0.61 -22.63 16 2 C 0.01 0.22 5.03 -17.43 -0.09 0.13 16 3 Si 0.89 20.67 29.57 -169.99 -5.03 15.65 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.02 6.94 -15.06 -0.10 -6.13 16 8 H 0.07 1.76 5.87 -52.48 -0.31 1.45 16 9 N -0.59 -12.97 2.97 -164.51 -0.49 -13.46 16 10 C 0.17 3.76 5.25 -3.71 -0.02 3.74 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.72 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.08 5.40 -26.38 -0.14 -2.23 16 14 C 0.16 2.98 3.03 -67.37 -0.20 2.78 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.53 4.44 -4.04 -0.02 2.51 16 17 N -0.68 -12.94 3.79 -61.25 -0.23 -13.17 16 18 C 0.54 10.58 7.58 -12.33 -0.09 10.49 16 19 O -0.53 -11.40 11.34 5.32 0.06 -11.34 16 20 C -0.14 -2.37 5.85 -104.82 -0.61 -2.99 16 21 C -0.04 -0.57 9.65 -38.87 -0.37 -0.94 16 22 C -0.16 -1.92 10.10 -39.50 -0.40 -2.31 16 23 C 0.11 1.31 11.17 -17.47 -0.20 1.12 16 24 N -0.47 -6.73 10.24 -9.15 -0.09 -6.83 16 25 C 0.09 1.51 6.31 -82.18 -0.52 0.99 16 26 C 0.34 5.47 5.02 36.00 0.18 5.66 16 27 F -0.18 -3.42 15.03 2.25 0.03 -3.39 16 28 F -0.18 -3.25 15.03 2.25 0.03 -3.21 16 29 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.09 2.17 6.11 -51.93 -0.32 1.85 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.42 7.44 -51.93 -0.39 1.04 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.41 7.89 5.47 -40.82 -0.22 7.66 16 41 H 0.15 2.31 6.52 -52.49 -0.34 1.97 16 42 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.43 8.11 -51.92 -0.42 1.01 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -29.15 355.33 -8.44 -37.59 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.78 Total: 7.27 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.91 Total: 8.16 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.20 Total: -56.09 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.06 Total: -11.34 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.07 Total: -6.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.15 -8.44 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024545723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.304 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds