Wall clock time and date at job start Tue Mar 31 2020 23:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48496 * 109.47175 * 269.99610 * 3 2 1 5 5 H 1.48495 * 109.46966 * 29.99854 * 3 2 1 6 6 H 1.48500 * 109.47228 * 149.99773 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99961 * 168.77529 * 7 2 1 9 9 N 1.36937 * 120.00137 * 348.50591 * 7 2 1 10 10 C 1.46919 * 120.62880 * 328.90699 * 9 7 2 11 11 C 1.53195 * 108.77652 * 233.58540 * 10 9 7 12 12 C 1.53039 * 109.31178 * 305.36625 * 11 10 9 13 13 C 1.53039 * 109.53817 * 61.36502 * 12 11 10 14 14 C 1.46918 * 120.63047 * 148.62678 * 9 7 2 15 15 H 1.09007 * 109.59027 * 246.20111 * 14 9 7 16 16 C 1.53005 * 109.58986 * 6.62691 * 14 9 7 17 17 N 1.46503 * 109.46819 * 300.11354 * 16 14 9 18 18 C 1.34773 * 119.99755 * 179.97438 * 17 16 14 19 19 O 1.21555 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.47844 * 119.99989 * 180.02562 * 18 17 16 21 21 C 1.40020 * 120.55778 * 359.71892 * 20 18 17 22 22 C 1.38355 * 118.28733 * 179.73594 * 21 20 18 23 23 C 1.38348 * 119.30363 * 0.53818 * 22 21 20 24 24 N 1.31933 * 121.07924 * 359.72749 * 23 22 21 25 25 C 1.31691 * 121.87886 * 359.97438 * 24 23 22 26 26 C 1.50695 * 119.71835 * 179.97438 * 25 24 23 27 27 F 1.39895 * 109.47204 * 120.02102 * 26 25 24 28 28 F 1.39894 * 109.47375 * 240.02533 * 26 25 24 29 29 H 0.97000 * 120.00378 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58897 * 353.37177 * 10 9 7 31 31 H 1.09003 * 109.59131 * 113.65183 * 10 9 7 32 32 H 1.09004 * 109.49326 * 65.31409 * 11 10 9 33 33 H 1.08997 * 109.49625 * 185.37757 * 11 10 9 34 34 H 1.09000 * 109.45469 * 181.38268 * 12 11 10 35 35 H 1.08998 * 109.45995 * 301.35490 * 12 11 10 36 36 H 1.08999 * 109.49845 * 58.58389 * 13 12 11 37 37 H 1.08995 * 109.49972 * 178.65107 * 13 12 11 38 38 H 1.08999 * 109.47114 * 60.11046 * 16 14 9 39 39 H 1.08998 * 109.46924 * 180.11200 * 16 14 9 40 40 H 0.96994 * 119.99882 * 359.97438 * 17 16 14 41 41 H 1.07999 * 120.85843 * 359.97438 * 21 20 18 42 42 H 1.08007 * 120.34906 * 180.28243 * 22 21 20 43 43 H 1.08000 * 119.46171 * 179.69608 * 23 22 21 44 44 H 1.09010 * 109.46798 * 0.02718 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0748 -1.2112 -0.1815 9 7 1.3462 -2.3761 0.2374 10 6 0.1677 -2.4057 1.1142 11 6 0.3851 -3.4676 2.1968 12 6 0.7087 -4.8081 1.5332 13 6 1.9976 -4.6780 0.7184 14 6 1.7950 -3.6288 -0.3854 15 1 1.0403 -3.9773 -1.0905 16 6 3.1164 -3.3921 -1.1194 17 7 2.9244 -2.3728 -2.1541 18 6 3.9595 -1.9991 -2.9322 19 8 5.0524 -2.5075 -2.7751 20 6 3.7659 -0.9701 -3.9759 21 6 2.5109 -0.3803 -4.1701 22 6 2.3841 0.5817 -5.1564 23 6 3.4877 0.9187 -5.9194 24 7 4.6571 0.3421 -5.7177 25 6 4.8294 -0.5743 -4.7877 26 6 6.1866 -1.2018 -4.5996 27 9 6.6392 -0.9530 -3.2994 28 9 6.0945 -2.5824 -4.8051 29 1 -0.4851 0.8400 -0.0004 30 1 0.0350 -1.4297 1.5811 31 1 -0.7175 -2.6539 0.5285 32 1 1.2150 -3.1692 2.8376 33 1 -0.5199 -3.5667 2.7961 34 1 0.8397 -5.5709 2.3007 35 1 -0.1106 -5.0937 0.8734 36 1 2.8121 -4.3682 1.3731 37 1 2.2403 -5.6392 0.2655 38 1 3.8704 -3.0518 -0.4097 39 1 3.4465 -4.3220 -1.5823 40 1 2.0524 -1.9669 -2.2791 41 1 1.6647 -0.6661 -3.5630 42 1 1.4324 1.0614 -5.3315 43 1 3.3904 1.6657 -6.6933 44 1 6.8873 -0.7735 -5.3164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024545723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:25 Heat of formation + Delta-G solvation = -89.672364 kcal Electronic energy + Delta-G solvation = -31236.099825 eV Core-core repulsion = 26824.214039 eV Total energy + Delta-G solvation = -4411.885787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.82405 -47.83136 -41.73332 -40.31185 -39.18187 -35.85244 -34.91750 -34.09790 -33.25402 -32.15030 -31.62781 -28.28921 -27.51327 -26.54750 -25.33477 -23.81492 -23.45244 -22.30708 -21.66498 -20.71896 -19.35286 -18.63142 -18.51361 -18.12701 -17.89494 -17.35745 -17.31728 -16.36781 -16.23629 -16.11097 -15.79822 -15.58863 -15.37530 -14.88251 -14.75596 -14.61598 -14.55788 -14.21899 -14.16154 -14.12431 -14.04368 -13.57194 -13.41667 -13.22362 -12.86998 -12.82934 -12.58431 -12.35906 -12.31339 -12.06513 -11.81191 -11.53450 -11.24204 -11.13566 -11.11853 -11.05983 -10.67204 -10.53540 -10.43340 -9.85832 -8.55758 -7.84231 -5.31955 -0.59925 -0.09564 1.34305 1.41699 1.48798 1.80559 2.19361 2.36434 2.45731 2.60970 3.21318 3.29529 3.32902 3.54171 3.63344 3.69627 3.86409 3.98778 4.07746 4.11586 4.21945 4.24408 4.27038 4.32686 4.42511 4.54644 4.64430 4.74372 4.80713 4.86947 4.94837 4.99867 5.14188 5.22382 5.28402 5.35655 5.37645 5.46526 5.56420 5.65188 5.74171 5.85838 6.43725 6.50719 6.60981 7.18371 7.21623 7.87184 8.40529 9.19057 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004823 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.609760 B = 5804.624563 C = 7058.948933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.023 4.023 3 Si 0.927 3.073 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.055 0.945 9 N -0.600 5.600 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.037 0.963 16 C 0.141 3.859 17 N -0.684 5.684 18 C 0.538 3.462 19 O -0.557 6.557 20 C -0.167 4.167 21 C -0.050 4.050 22 C -0.147 4.147 23 C 0.122 3.878 24 N -0.472 5.472 25 C 0.079 3.921 26 C 0.332 3.668 27 F -0.203 7.203 28 F -0.197 7.197 29 H 0.250 0.750 30 H 0.053 0.947 31 H 0.004 0.996 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.411 0.589 41 H 0.146 0.854 42 H 0.184 0.816 43 H 0.215 0.785 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -2.272 -10.071 10.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.220 4.220 3 Si 0.757 3.243 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.073 0.927 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.055 0.945 16 C 0.017 3.983 17 N -0.335 5.335 18 C 0.324 3.676 19 O -0.438 6.438 20 C -0.172 4.172 21 C -0.076 4.076 22 C -0.166 4.166 23 C -0.035 4.035 24 N -0.180 5.180 25 C -0.060 4.060 26 C 0.277 3.723 27 F -0.184 7.184 28 F -0.179 7.179 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.249 0.751 41 H 0.164 0.836 42 H 0.201 0.799 43 H 0.231 0.769 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.280 -2.307 -10.419 11.164 hybrid contribution -0.820 1.066 1.074 1.721 sum 2.459 -1.241 -9.345 9.743 Atomic orbital electron populations 1.70066 1.05562 1.25331 1.55484 1.25359 0.95559 0.99308 1.01786 0.85915 0.77911 0.82577 0.77909 1.20592 1.21788 1.22020 1.19149 0.90810 0.84731 1.41932 0.92742 1.44241 1.32719 1.03194 1.52347 1.20613 0.87364 0.96960 0.89850 1.22063 1.00339 0.96716 0.98419 1.21339 0.97073 0.96558 0.98975 1.21965 0.98152 0.98481 0.97548 1.20985 0.92638 0.87821 0.93150 0.94547 1.21284 0.97780 0.90242 0.88974 1.45874 1.12911 1.41021 1.33661 1.18302 0.84717 0.82543 0.82007 1.90797 1.25045 1.56734 1.71234 1.20914 0.96455 1.00640 0.99225 1.22135 0.95784 0.93660 0.96012 1.22711 1.02917 0.96448 0.94523 1.23755 0.86030 0.96153 0.97518 1.67379 1.27259 1.06981 1.16428 1.21857 0.95361 0.95481 0.93334 1.20256 0.92525 0.77256 0.82232 1.93000 1.89629 1.93889 1.41886 1.92986 1.97080 1.33045 1.94742 0.94033 0.92875 0.97781 0.93869 0.91735 0.90881 0.92245 0.93009 0.90048 0.93704 0.90724 0.75073 0.83598 0.79871 0.76864 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.30 11.08 21.65 0.24 -48.06 16 2 C -0.02 -1.18 5.03 84.86 0.43 -0.75 16 3 Si 0.93 43.09 29.57 68.60 2.03 45.12 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 7 C -0.24 -11.63 6.94 84.03 0.58 -11.05 16 8 H 0.05 2.86 5.87 -2.91 -0.02 2.84 16 9 N -0.60 -26.70 2.97 -674.40 -2.00 -28.70 16 10 C 0.18 7.80 5.25 86.37 0.45 8.25 16 11 C -0.14 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -2.98 5.88 30.62 0.18 -2.80 16 13 C -0.12 -3.77 5.40 30.82 0.17 -3.60 16 14 C 0.16 5.91 3.03 45.13 0.14 6.04 16 15 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 16 C 0.14 5.31 4.44 86.38 0.38 5.70 16 17 N -0.68 -26.56 3.79 -465.96 -1.77 -28.32 16 18 C 0.54 21.58 7.58 86.79 0.66 22.24 16 19 O -0.56 -24.81 11.34 -3.89 -0.04 -24.85 16 20 C -0.17 -5.81 5.85 -19.99 -0.12 -5.93 16 21 C -0.05 -1.46 9.65 22.73 0.22 -1.24 16 22 C -0.15 -3.12 10.10 22.32 0.23 -2.89 16 23 C 0.12 2.42 11.17 84.70 0.95 3.37 16 24 N -0.47 -12.43 10.24 -182.85 -1.87 -14.30 16 25 C 0.08 2.55 6.31 42.89 0.27 2.82 16 26 C 0.33 10.59 5.02 71.23 0.36 10.95 16 27 F -0.20 -7.82 15.03 44.97 0.68 -7.15 16 28 F -0.20 -7.07 15.03 44.97 0.68 -6.40 16 29 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.05 2.70 6.11 -2.38 -0.01 2.68 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.90 7.44 -2.39 -0.02 1.88 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.41 16.13 5.47 -92.71 -0.51 15.62 16 41 H 0.15 4.42 6.52 -2.91 -0.02 4.40 16 42 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.16 3.62 8.11 -2.38 -0.02 3.60 16 Total: -1.00 -65.46 355.33 3.55 -61.91 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.53 Total: 24.24 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 5.08 Total: 26.52 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -5.40 Total: -119.39 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.85 kcal Atomic # 9 Polarization: -14.90 SS G_CDS: 1.35 Total: -13.54 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.46 3.55 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024545723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.762 kcal (2) G-P(sol) polarization free energy of solvation -65.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds