Wall clock time and date at job start Tue Mar 31 2020 23:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21556 * 120.00245 * 0.02562 * 17 16 14 19 19 C 1.47836 * 120.00006 * 179.97438 * 17 16 14 20 20 C 1.40028 * 120.56135 * 180.02562 * 19 17 16 21 21 C 1.38355 * 118.29049 * 179.97438 * 20 19 17 22 22 C 1.38344 * 119.30387 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.46419 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47716 * 210.00119 * 23 22 21 25 25 F 1.39901 * 109.46828 * 330.00071 * 23 22 21 26 26 N 1.31934 * 121.08318 * 0.02562 * 22 21 20 27 27 C 1.31696 * 121.87350 * 359.68384 * 26 22 21 28 28 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 29 29 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 30 30 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 31 31 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 32 32 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 33 33 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 34 34 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 35 35 H 1.08997 * 110.24523 * 151.61959 * 12 11 10 36 36 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 37 37 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 38 38 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 39 39 H 1.08003 * 120.85168 * 359.94555 * 20 19 17 40 40 H 1.08004 * 120.34683 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47217 * 89.99637 * 23 22 21 42 42 H 1.08001 * 119.71521 * 180.28956 * 27 26 22 43 43 H 1.09007 * 108.15424 * 33.30548 * 28 9 7 44 44 H 1.08997 * 108.16212 * 149.87211 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9482 -5.3016 -1.4249 19 6 3.7973 -4.1952 -3.4775 20 6 5.0361 -4.6673 -3.9283 21 6 5.4657 -4.2837 -5.1862 22 6 4.6652 -3.4545 -5.9514 23 6 5.1294 -3.0349 -7.3224 24 9 4.6117 -1.7706 -7.6235 25 9 6.5273 -2.9841 -7.3461 26 7 3.5021 -3.0248 -5.5006 27 6 3.0474 -3.3665 -4.3128 28 6 2.1839 -3.5380 0.6659 29 1 -0.4850 -0.8349 -0.0928 30 1 0.7234 -2.4530 2.7206 31 1 0.2089 -0.9925 1.8346 32 1 -1.5417 -2.6551 1.9211 33 1 -0.9968 -2.3364 0.2689 34 1 0.2634 -4.6389 1.7241 35 1 -1.4105 -4.8198 1.1184 36 1 -0.3695 -5.2943 -0.8472 37 1 -0.2633 -3.5249 -0.9671 38 1 1.5691 -3.5331 -2.2918 39 1 5.6408 -5.3139 -3.3096 40 1 6.4156 -4.6288 -5.5672 41 1 4.7794 -3.7561 -8.0610 42 1 2.0881 -2.9982 -3.9805 43 1 3.2404 -3.3972 0.4372 44 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034241307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:53 Heat of formation + Delta-G solvation = -64.959551 kcal Electronic energy + Delta-G solvation = -30070.132094 eV Core-core repulsion = 25659.317935 eV Total energy + Delta-G solvation = -4410.814159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.25457 -47.25332 -40.77473 -39.30571 -37.94239 -34.65640 -33.46024 -32.94725 -32.47318 -31.15562 -30.07112 -27.45334 -26.02726 -24.41403 -24.03874 -23.28406 -22.56153 -20.82966 -20.11903 -19.43531 -18.28674 -17.82533 -17.74856 -17.34200 -17.15120 -16.42869 -15.50195 -15.30767 -15.25480 -14.82177 -14.62167 -14.28692 -14.05683 -13.98777 -13.65954 -13.59678 -13.48838 -13.33525 -13.18516 -12.82037 -12.75244 -12.45103 -12.22840 -11.90396 -11.58745 -11.14561 -10.94310 -10.62150 -10.49009 -10.25599 -10.19608 -10.16450 -10.04993 -9.86161 -9.79909 -9.57902 -9.50785 -9.49081 -8.84325 -8.20653 -7.02349 -6.22128 -3.07226 0.26119 0.92448 2.76599 3.07724 3.34062 3.49947 3.56835 3.64269 3.72442 3.77112 4.00167 4.45182 4.56262 4.57361 4.58456 4.77805 4.86323 4.97028 5.08780 5.11977 5.25076 5.28376 5.33845 5.59357 5.66344 5.81319 5.86530 5.90984 5.94425 6.15950 6.18266 6.26323 6.30417 6.52187 6.60479 6.62163 6.78898 6.83725 6.92931 7.18388 7.20328 7.44696 7.74705 7.95394 8.38447 8.48144 9.02062 9.80005 10.24530 11.08026 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003603 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.217843 B = 7768.547544 C = 9291.015371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.012 4.012 3 Si 1.033 2.967 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.355 4.355 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.136 4.136 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.113 3.887 15 H 0.078 0.922 16 N -0.692 5.692 17 C 0.557 3.443 18 O -0.544 6.544 19 C -0.159 4.159 20 C -0.019 4.019 21 C -0.149 4.149 22 C 0.061 3.939 23 C 0.328 3.672 24 F -0.184 7.184 25 F -0.194 7.194 26 N -0.456 5.456 27 C 0.142 3.858 28 C 0.153 3.847 29 H 0.273 0.727 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.131 0.869 42 H 0.169 0.831 43 H 0.041 0.959 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -11.287 -9.995 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.215 4.215 3 Si 0.863 3.137 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.483 4.483 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.006 3.994 15 H 0.096 0.904 16 N -0.341 5.341 17 C 0.342 3.658 18 O -0.423 6.423 19 C -0.164 4.164 20 C -0.045 4.045 21 C -0.169 4.169 22 C -0.078 4.078 23 C 0.274 3.726 24 F -0.165 7.165 25 F -0.176 7.176 26 N -0.164 5.164 27 C -0.017 4.017 28 C 0.023 3.977 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.148 0.852 42 H 0.186 0.814 43 H 0.059 0.941 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.378 -9.510 -9.919 14.422 hybrid contribution 0.509 -1.732 0.018 1.805 sum 4.887 -11.241 -9.901 15.757 Atomic orbital electron populations 1.70883 1.07184 1.30604 1.45349 1.25379 0.95751 1.00572 0.99809 0.83989 0.75772 0.77557 0.76379 1.21280 1.22172 1.22287 1.19855 1.09314 0.92489 1.26645 0.91936 1.44369 1.38943 1.04951 1.42441 1.20605 0.86846 1.01624 0.90451 1.21096 0.99444 0.94511 1.02437 1.20943 0.99883 0.97507 0.96476 1.21680 0.93969 1.01261 0.98118 1.22895 0.93786 0.99575 0.83183 0.90412 1.45955 1.19427 1.49597 1.19115 1.17843 0.81862 0.80774 0.85296 1.90749 1.57199 1.37913 1.56485 1.21310 0.97253 1.01085 0.96742 1.21738 0.93650 0.94869 0.94257 1.21815 1.01153 0.98982 0.94913 1.21838 0.92789 0.96644 0.96548 1.20078 0.74767 0.83850 0.93950 1.93055 1.86304 1.43136 1.94018 1.93019 1.30358 1.96839 1.97353 1.67307 1.13006 1.20783 1.15285 1.23069 0.99127 0.91526 0.87991 1.20618 0.96243 0.86238 0.94640 0.91369 0.95765 0.88712 0.94117 0.91007 0.91687 0.92536 0.93520 0.90913 0.76519 0.82759 0.83235 0.85205 0.81382 0.94051 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 11.99 55.49 0.67 -23.85 16 2 C -0.01 -0.33 4.53 -17.43 -0.08 -0.41 16 3 Si 1.03 24.51 30.06 -169.99 -5.11 19.41 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.36 -9.13 9.46 -15.06 -0.14 -9.28 16 8 H 0.06 1.69 8.05 -52.48 -0.42 1.27 16 9 N -0.59 -13.32 2.62 -175.40 -0.46 -13.78 16 10 C 0.13 2.76 5.22 -5.20 -0.03 2.74 16 11 C -0.14 -2.51 4.96 -30.18 -0.15 -2.66 16 12 C -0.11 -1.72 5.76 -28.40 -0.16 -1.88 16 13 C -0.11 -1.77 5.23 -27.19 -0.14 -1.91 16 14 C 0.11 1.93 2.91 -66.23 -0.19 1.74 16 15 H 0.08 1.32 7.57 -51.93 -0.39 0.92 16 16 N -0.69 -11.31 5.04 -53.10 -0.27 -11.57 16 17 C 0.56 9.24 7.59 -12.33 -0.09 9.15 16 18 O -0.54 -10.40 16.08 5.32 0.09 -10.32 16 19 C -0.16 -2.25 5.89 -104.82 -0.62 -2.86 16 20 C -0.02 -0.23 9.72 -38.87 -0.38 -0.60 16 21 C -0.15 -1.55 9.42 -39.50 -0.37 -1.92 16 22 C 0.06 0.71 6.58 -82.51 -0.54 0.17 16 23 C 0.33 3.13 5.72 36.01 0.21 3.34 16 24 F -0.18 -2.31 17.05 2.25 0.04 -2.27 16 25 F -0.19 -1.93 16.45 2.25 0.04 -1.89 16 26 N -0.46 -6.33 9.94 -9.14 -0.09 -6.42 16 27 C 0.14 1.95 10.71 -17.13 -0.18 1.77 16 28 C 0.15 3.08 4.75 -4.93 -0.02 3.06 16 29 H 0.27 7.18 4.95 -40.82 -0.20 6.98 16 30 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.09 2.33 5.61 -51.93 -0.29 2.04 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.49 4.65 -51.93 -0.24 1.25 16 34 H 0.06 1.01 6.28 -51.93 -0.33 0.69 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 38 H 0.40 6.17 6.51 -40.82 -0.27 5.91 16 39 H 0.15 1.72 7.74 -52.48 -0.41 1.31 16 40 H 0.15 1.12 7.59 -52.48 -0.40 0.72 16 41 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.17 2.13 6.42 -52.49 -0.34 1.79 16 43 H 0.04 0.93 7.81 -51.93 -0.41 0.52 16 44 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -30.60 356.32 -7.93 -38.53 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.30 Total: 6.37 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.90 Total: 0.43 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.15 Total: -55.62 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.11 Total: 19.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.60 -7.93 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034241307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.431 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds