Wall clock time and date at job start Tue Mar 31 2020 23:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21556 * 120.00245 * 0.02562 * 17 16 14 19 19 C 1.47836 * 120.00006 * 179.97438 * 17 16 14 20 20 C 1.40028 * 120.56135 * 180.02562 * 19 17 16 21 21 C 1.38355 * 118.29049 * 179.97438 * 20 19 17 22 22 C 1.38344 * 119.30387 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.46419 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47716 * 210.00119 * 23 22 21 25 25 F 1.39901 * 109.46828 * 330.00071 * 23 22 21 26 26 N 1.31934 * 121.08318 * 0.02562 * 22 21 20 27 27 C 1.31696 * 121.87350 * 359.68384 * 26 22 21 28 28 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 29 29 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 30 30 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 31 31 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 32 32 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 33 33 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 34 34 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 35 35 H 1.08997 * 110.24523 * 151.61959 * 12 11 10 36 36 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 37 37 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 38 38 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 39 39 H 1.08003 * 120.85168 * 359.94555 * 20 19 17 40 40 H 1.08004 * 120.34683 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47217 * 89.99637 * 23 22 21 42 42 H 1.08001 * 119.71521 * 180.28956 * 27 26 22 43 43 H 1.09007 * 108.15424 * 33.30548 * 28 9 7 44 44 H 1.08997 * 108.16212 * 149.87211 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9482 -5.3016 -1.4249 19 6 3.7973 -4.1952 -3.4775 20 6 5.0361 -4.6673 -3.9283 21 6 5.4657 -4.2837 -5.1862 22 6 4.6652 -3.4545 -5.9514 23 6 5.1294 -3.0349 -7.3224 24 9 4.6117 -1.7706 -7.6235 25 9 6.5273 -2.9841 -7.3461 26 7 3.5021 -3.0248 -5.5006 27 6 3.0474 -3.3665 -4.3128 28 6 2.1839 -3.5380 0.6659 29 1 -0.4850 -0.8349 -0.0928 30 1 0.7234 -2.4530 2.7206 31 1 0.2089 -0.9925 1.8346 32 1 -1.5417 -2.6551 1.9211 33 1 -0.9968 -2.3364 0.2689 34 1 0.2634 -4.6389 1.7241 35 1 -1.4105 -4.8198 1.1184 36 1 -0.3695 -5.2943 -0.8472 37 1 -0.2633 -3.5249 -0.9671 38 1 1.5691 -3.5331 -2.2918 39 1 5.6408 -5.3139 -3.3096 40 1 6.4156 -4.6288 -5.5672 41 1 4.7794 -3.7561 -8.0610 42 1 2.0881 -2.9982 -3.9805 43 1 3.2404 -3.3972 0.4372 44 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034241307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:52 Heat of formation + Delta-G solvation = -83.194321 kcal Electronic energy + Delta-G solvation = -30070.922813 eV Core-core repulsion = 25659.317935 eV Total energy + Delta-G solvation = -4411.604878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.05169 -48.07400 -41.87067 -40.61840 -39.42315 -36.19572 -35.00562 -34.00812 -33.51744 -32.89517 -31.53823 -28.50591 -27.65335 -25.82241 -25.06763 -24.76767 -23.83447 -22.27386 -21.47900 -20.93526 -19.31015 -19.05373 -18.67844 -18.56358 -18.35219 -17.52557 -16.90916 -16.63489 -16.42317 -16.19596 -15.99701 -15.61195 -15.46247 -15.38181 -14.90375 -14.77069 -14.50767 -14.34452 -14.31363 -14.21072 -13.93289 -13.78092 -13.67631 -13.46159 -12.77368 -12.55571 -12.47105 -12.39909 -12.18184 -11.96725 -11.76801 -11.55125 -11.35506 -11.26486 -11.19122 -11.17604 -10.71552 -10.53461 -10.36701 -10.02533 -8.86782 -8.27177 -5.07488 -0.75004 -0.03457 1.57011 1.59760 1.62690 1.80967 2.05806 2.26870 2.55869 2.65891 3.04971 3.13021 3.14791 3.45553 3.51133 3.59157 3.68091 3.80767 3.82881 3.97700 4.01191 4.10463 4.23158 4.38447 4.39609 4.43873 4.47627 4.67031 4.69092 4.74835 4.86233 4.93171 5.07452 5.12114 5.15051 5.21862 5.29730 5.40041 5.49939 5.55489 5.63597 5.91474 6.41989 6.47924 6.50811 7.06786 7.09918 7.86742 8.31896 9.05651 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003603 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.217843 B = 7768.547544 C = 9291.015371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.051 4.051 3 Si 1.072 2.928 4 H -0.293 1.293 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.348 4.348 8 H 0.043 0.957 9 N -0.597 5.597 10 C 0.131 3.869 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.104 4.104 14 C 0.121 3.879 15 H 0.086 0.914 16 N -0.693 5.693 17 C 0.558 3.442 18 O -0.573 6.573 19 C -0.177 4.177 20 C -0.019 4.019 21 C -0.135 4.135 22 C 0.056 3.944 23 C 0.327 3.673 24 F -0.204 7.204 25 F -0.195 7.195 26 N -0.478 5.478 27 C 0.137 3.863 28 C 0.156 3.844 29 H 0.272 0.728 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.403 0.597 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.011 0.989 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -12.943 -10.972 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.251 4.251 3 Si 0.900 3.100 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.477 4.477 8 H 0.061 0.939 9 N -0.320 5.320 10 C 0.007 3.993 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.142 4.142 14 C 0.013 3.987 15 H 0.104 0.896 16 N -0.341 5.341 17 C 0.345 3.655 18 O -0.455 6.455 19 C -0.182 4.182 20 C -0.045 4.045 21 C -0.154 4.154 22 C -0.083 4.083 23 C 0.273 3.727 24 F -0.185 7.185 25 F -0.176 7.176 26 N -0.187 5.187 27 C -0.022 4.022 28 C 0.027 3.973 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.239 0.761 39 H 0.181 0.819 40 H 0.202 0.798 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.029 0.971 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.825 -11.182 -10.905 16.347 hybrid contribution 0.471 -1.262 0.309 1.382 sum 5.296 -12.444 -10.597 17.181 Atomic orbital electron populations 1.70904 1.07578 1.30772 1.47301 1.26081 0.96013 1.02488 1.00507 0.83419 0.74832 0.75232 0.76475 1.21869 1.21625 1.22048 1.19782 1.08116 0.93632 1.26191 0.93945 1.44391 1.39744 1.05479 1.42374 1.20555 0.87614 1.00167 0.90919 1.20937 0.98409 0.96219 1.01175 1.20934 1.01520 0.95339 0.96164 1.21609 0.92595 1.01616 0.98375 1.22679 0.94769 0.98689 0.82535 0.89646 1.45959 1.19631 1.49637 1.18917 1.18198 0.81386 0.79974 0.85964 1.90720 1.57875 1.39277 1.57582 1.21165 0.98590 1.02673 0.95774 1.21955 0.92857 0.94591 0.95099 1.22132 1.01910 0.97667 0.93688 1.22375 0.92138 0.96139 0.97628 1.20546 0.74557 0.83787 0.93762 1.93016 1.86638 1.44776 1.94048 1.93019 1.30489 1.96816 1.97303 1.67330 1.14415 1.21618 1.15314 1.23063 0.99310 0.91611 0.88216 1.20615 0.94457 0.85921 0.96344 0.91471 0.94409 0.92120 0.92620 0.93483 0.91277 0.89457 0.90669 0.93071 0.76138 0.81867 0.79758 0.80404 0.81397 0.97104 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.41 11.99 21.65 0.26 -51.15 16 2 C -0.05 -2.76 4.53 84.86 0.38 -2.38 16 3 Si 1.07 50.67 30.06 68.60 2.06 52.73 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.35 -18.34 9.46 84.04 0.80 -17.54 16 8 H 0.04 2.37 8.05 -2.91 -0.02 2.35 16 9 N -0.60 -27.51 2.62 -708.84 -1.86 -29.37 16 10 C 0.13 5.64 5.22 83.58 0.44 6.07 16 11 C -0.13 -4.64 4.96 28.36 0.14 -4.50 16 12 C -0.10 -2.92 5.76 29.51 0.17 -2.75 16 13 C -0.10 -3.10 5.23 30.30 0.16 -2.94 16 14 C 0.12 4.04 2.91 46.09 0.13 4.17 16 15 H 0.09 2.78 7.57 -2.38 -0.02 2.76 16 16 N -0.69 -22.80 5.04 -440.18 -2.22 -25.02 16 17 C 0.56 18.65 7.59 86.78 0.66 19.30 16 18 O -0.57 -21.98 16.08 -3.89 -0.06 -22.05 16 19 C -0.18 -4.98 5.89 -19.99 -0.12 -5.10 16 20 C -0.02 -0.43 9.72 22.73 0.22 -0.21 16 21 C -0.13 -2.46 9.42 22.32 0.21 -2.25 16 22 C 0.06 1.20 6.58 42.57 0.28 1.48 16 23 C 0.33 5.36 5.72 71.24 0.41 5.77 16 24 F -0.20 -4.80 17.05 44.97 0.77 -4.03 16 25 F -0.20 -3.31 16.45 44.97 0.74 -2.57 16 26 N -0.48 -12.92 9.94 -182.82 -1.82 -14.73 16 27 C 0.14 3.77 10.71 85.02 0.91 4.68 16 28 C 0.16 6.29 4.75 87.42 0.41 6.71 16 29 H 0.27 14.70 4.95 -92.71 -0.46 14.24 16 30 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.06 3.05 5.61 -2.38 -0.01 3.03 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.96 4.65 -2.39 -0.01 1.95 16 34 H 0.07 1.96 6.28 -2.39 -0.01 1.94 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.05 1.78 6.58 -2.39 -0.02 1.77 16 38 H 0.40 12.73 6.51 -92.71 -0.60 12.13 16 39 H 0.16 3.41 7.74 -2.91 -0.02 3.39 16 40 H 0.19 2.04 7.59 -2.91 -0.02 2.02 16 41 H 0.18 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.17 4.41 6.42 -2.91 -0.02 4.39 16 43 H 0.01 0.49 7.81 -2.38 -0.02 0.47 16 44 H 0.05 1.93 6.89 -2.39 -0.02 1.91 16 Total: -1.00 -67.60 356.32 3.84 -63.76 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.77 Total: 21.90 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.20 Total: 10.52 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -5.63 Total: -120.27 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.51 Total: -6.59 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.06 Total: 52.73 kcal Total: -67.60 3.84 -63.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034241307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.435 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds