Wall clock time and date at job start Tue Mar 31 2020 23:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46807 * 275.28302 * 3 2 1 5 5 H 1.48501 * 109.47200 * 35.28213 * 3 2 1 6 6 H 1.48500 * 109.47360 * 155.28304 * 3 2 1 7 7 C 1.38818 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99720 * 337.60305 * 7 2 1 9 9 N 1.36932 * 120.00277 * 157.60410 * 7 2 1 10 10 C 1.43439 * 120.53692 * 320.87992 * 9 7 2 11 11 C 1.54901 * 116.08172 * 271.55240 * 10 9 7 12 12 C 1.54839 * 110.14287 * 318.63778 * 11 10 9 13 13 C 1.50133 * 110.81166 * 321.13757 * 12 11 10 14 14 C 1.52518 * 105.42115 * 97.68056 * 13 12 11 15 15 H 1.09008 * 108.52154 * 31.83935 * 14 13 12 16 16 N 1.46496 * 108.40276 * 149.43807 * 14 13 12 17 17 C 1.34773 * 120.00403 * 207.35321 * 16 14 13 18 18 O 1.21550 * 120.00040 * 0.02562 * 17 16 14 19 19 C 1.47839 * 120.00349 * 180.02562 * 17 16 14 20 20 C 1.40027 * 120.55985 * 355.55154 * 19 17 16 21 21 C 1.38348 * 118.29191 * 179.73422 * 20 19 17 22 22 C 1.38361 * 119.30473 * 0.53851 * 21 20 19 23 23 N 1.31921 * 121.07281 * 359.72329 * 22 21 20 24 24 C 1.31692 * 121.88729 * 359.97438 * 23 22 21 25 25 C 1.50704 * 119.72403 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47174 * 122.00273 * 25 24 23 27 27 F 1.39896 * 109.47066 * 242.00687 * 25 24 23 28 28 C 1.46237 * 114.27915 * 270.59493 * 14 13 12 29 29 H 0.97000 * 120.00146 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.15592 * 33.26973 * 10 9 7 31 31 H 1.09000 * 108.15585 * 149.82961 * 10 9 7 32 32 H 1.08997 * 109.35664 * 78.84443 * 11 10 9 33 33 H 1.08995 * 109.35424 * 198.56691 * 11 10 9 34 34 H 1.08995 * 109.20930 * 81.47284 * 12 11 10 35 35 H 1.08993 * 109.21260 * 200.79005 * 12 11 10 36 36 H 1.08997 * 110.24708 * 338.70244 * 13 12 11 37 37 H 1.08998 * 110.24375 * 216.65537 * 13 12 11 38 38 H 0.97002 * 120.00344 * 27.35643 * 16 14 13 39 39 H 1.08007 * 120.85068 * 359.97434 * 20 19 17 40 40 H 1.08001 * 120.35038 * 180.23666 * 21 20 19 41 41 H 1.07996 * 119.46424 * 179.74557 * 22 21 20 42 42 H 1.09004 * 109.46521 * 2.00202 * 25 24 23 43 43 H 1.09003 * 109.84672 * 177.90984 * 28 14 13 44 44 H 1.09000 * 109.84359 * 298.89668 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3860 2.1108 -1.3942 5 1 1.5080 2.6179 0.8087 6 1 3.5991 1.4105 0.5854 7 6 2.0103 -1.2022 0.0005 8 1 1.5313 -2.1020 0.3573 9 7 3.3021 -1.2472 -0.4512 10 6 3.7012 -0.4796 -1.5954 11 6 3.5282 -1.1687 -2.9718 12 6 3.9591 -2.6532 -2.8828 13 6 5.1722 -2.8052 -2.0114 14 6 4.6396 -3.2197 -0.6436 15 1 3.7360 -3.8119 -0.7888 16 7 5.6457 -4.0612 0.0088 17 6 5.2675 -4.9831 0.9163 18 8 4.0914 -5.1166 1.1931 19 6 6.2828 -5.8319 1.5752 20 6 7.6293 -5.7532 1.1990 21 6 8.5407 -6.5650 1.8504 22 6 8.0954 -7.4287 2.8354 23 7 6.8193 -7.4853 3.1653 24 6 5.9149 -6.7288 2.5787 25 6 4.4701 -6.8330 2.9943 26 9 4.0172 -5.5813 3.4248 27 9 3.7012 -7.2581 1.9057 28 6 4.3242 -2.1005 0.2432 29 1 -0.4850 0.8400 0.0004 30 1 3.1231 0.4444 -1.6030 31 1 4.7521 -0.2153 -1.4773 32 1 2.4826 -1.1135 -3.2746 33 1 4.1459 -0.6589 -3.7112 34 1 3.1412 -3.2396 -2.4642 35 1 4.1877 -3.0210 -3.8831 36 1 5.7047 -1.8571 -1.9375 37 1 5.8289 -3.5782 -2.4106 38 1 6.5842 -3.9550 -0.2122 39 1 7.9488 -5.0733 0.4229 40 1 9.5881 -6.5287 1.5895 41 1 8.8040 -8.0665 3.3427 42 1 4.3771 -7.5526 3.8078 43 1 3.9166 -2.4757 1.1820 44 1 5.2240 -1.5166 0.4365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034297016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:13 Heat of formation + Delta-G solvation = -54.749501 kcal Electronic energy + Delta-G solvation = -30792.785869 eV Core-core repulsion = 26382.414451 eV Total energy + Delta-G solvation = -4410.371418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.66377 -46.64287 -40.96157 -39.56418 -37.81097 -34.77580 -33.54228 -33.01384 -32.44402 -31.28944 -30.13086 -27.04820 -26.32582 -25.04042 -24.50172 -23.24557 -22.41877 -20.82357 -20.32642 -19.40802 -18.32370 -17.67097 -17.38132 -16.96127 -16.41439 -16.37859 -15.84688 -15.41509 -15.34868 -15.13165 -14.70740 -14.36406 -14.07873 -13.76393 -13.62604 -13.39842 -13.30028 -13.16216 -12.94555 -12.86949 -12.72976 -12.24414 -12.04605 -11.90169 -11.69050 -11.33720 -11.11487 -10.76317 -10.46418 -10.41550 -10.38164 -10.23410 -10.12595 -10.00223 -9.68895 -9.66314 -9.63773 -9.42901 -8.92172 -8.39707 -6.75495 -5.93683 -3.37812 0.17866 0.59399 2.73488 3.09484 3.21252 3.34532 3.46887 3.49629 3.55203 4.02777 4.21216 4.27851 4.35483 4.54259 4.57699 4.80128 4.90530 5.03008 5.05887 5.15858 5.17238 5.29701 5.38229 5.42075 5.49726 5.52688 5.85742 5.88834 5.92773 5.96683 6.09285 6.15037 6.34042 6.49557 6.54374 6.62809 6.71460 6.76659 6.84354 6.91271 7.00585 7.26876 7.57971 8.13972 8.29182 8.44119 9.06770 9.76211 10.17759 11.21723 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.003572 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.559175 B = 7837.708710 C = 8615.022965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.141 4.141 12 C -0.106 4.106 13 C -0.119 4.119 14 C 0.134 3.866 15 H 0.093 0.907 16 N -0.722 5.722 17 C 0.543 3.457 18 O -0.493 6.493 19 C -0.140 4.140 20 C -0.048 4.048 21 C -0.160 4.160 22 C 0.116 3.884 23 N -0.463 5.463 24 C 0.101 3.899 25 C 0.336 3.664 26 F -0.178 7.178 27 F -0.180 7.180 28 C 0.129 3.871 29 H 0.263 0.737 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.390 0.610 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.121 0.879 43 H 0.075 0.925 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.106 -13.764 0.946 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.161 4.161 3 Si 0.709 3.291 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.157 4.157 14 C 0.030 3.970 15 H 0.111 0.889 16 N -0.374 5.374 17 C 0.326 3.674 18 O -0.367 6.367 19 C -0.146 4.146 20 C -0.074 4.074 21 C -0.179 4.179 22 C -0.041 4.041 23 N -0.171 5.171 24 C -0.039 4.039 25 C 0.282 3.718 26 F -0.159 7.159 27 F -0.161 7.161 28 C 0.004 3.996 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.224 0.776 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 19.721 -14.300 1.821 24.427 hybrid contribution 1.300 1.711 -0.926 2.340 sum 21.021 -12.589 0.895 24.518 Atomic orbital electron populations 1.69877 1.06003 1.26642 1.51271 1.25492 0.95021 0.97664 0.97907 0.86893 0.80622 0.84781 0.76813 1.21425 1.23003 1.19642 1.18784 0.85840 0.94424 1.40312 0.90309 1.44028 1.07438 1.53296 1.26788 1.20705 0.96678 0.94056 0.86660 1.22812 1.01044 0.95190 0.99170 1.21287 0.97176 0.98057 0.97928 1.21319 0.98476 1.01197 0.94689 1.21001 0.90981 0.92913 0.92108 0.88916 1.46327 1.10953 1.37491 1.42662 1.17959 0.88158 0.80754 0.80481 1.90968 1.17153 1.67643 1.60942 1.21048 0.95284 0.99315 0.98923 1.21844 0.91443 0.96667 0.97484 1.22248 1.01455 0.96893 0.97341 1.22984 0.91614 0.95692 0.93827 1.67341 1.02442 1.21360 1.25967 1.21966 0.96513 0.92510 0.92950 1.19797 0.82553 0.83008 0.86489 1.93090 1.89499 1.43824 1.89517 1.93061 1.76126 1.89550 1.57404 1.20741 0.92308 0.90985 0.95588 0.92736 0.93985 0.95381 0.91982 0.93294 0.91181 0.93513 0.90971 0.92031 0.77558 0.83666 0.83450 0.81442 0.86192 0.90651 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.97 55.49 0.78 -27.15 16 2 C 0.04 1.17 5.31 -17.43 -0.09 1.08 16 3 Si 0.88 22.62 25.15 -169.99 -4.27 18.34 16 4 H -0.29 -7.12 6.73 56.52 0.38 -6.74 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.27 -7.60 9.94 -15.06 -0.15 -7.75 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.59 -14.12 2.16 -175.08 -0.38 -14.50 16 10 C 0.15 3.14 4.20 -4.66 -0.02 3.12 16 11 C -0.14 -2.60 6.41 -24.76 -0.16 -2.75 16 12 C -0.11 -1.73 5.65 -27.19 -0.15 -1.88 16 13 C -0.12 -1.68 5.23 -28.40 -0.15 -1.83 16 14 C 0.13 2.25 1.99 -71.39 -0.14 2.11 16 15 H 0.09 1.90 6.31 -51.92 -0.33 1.57 16 16 N -0.72 -9.69 4.86 -58.17 -0.28 -9.97 16 17 C 0.54 8.43 7.40 -12.33 -0.09 8.34 16 18 O -0.49 -9.87 10.70 5.32 0.06 -9.81 16 19 C -0.14 -1.73 5.85 -104.82 -0.61 -2.34 16 20 C -0.05 -0.38 9.64 -38.87 -0.37 -0.76 16 21 C -0.16 -0.96 10.10 -39.50 -0.40 -1.36 16 22 C 0.12 0.84 11.17 -17.47 -0.20 0.65 16 23 N -0.46 -4.97 10.24 -9.14 -0.09 -5.06 16 24 C 0.10 1.29 6.31 -82.17 -0.52 0.78 16 25 C 0.34 4.77 5.02 36.01 0.18 4.95 16 26 F -0.18 -3.11 14.97 2.25 0.03 -3.07 16 27 F -0.18 -3.02 15.10 2.25 0.03 -2.99 16 28 C 0.13 2.61 5.50 -5.21 -0.03 2.58 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.04 1.01 3.21 -51.93 -0.17 0.84 16 31 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.32 6.83 -51.93 -0.35 0.97 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.00 6.29 -51.93 -0.33 0.67 16 37 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 38 H 0.39 3.68 6.70 -40.82 -0.27 3.41 16 39 H 0.15 0.74 6.55 -52.48 -0.34 0.39 16 40 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.12 1.27 8.11 -51.93 -0.42 0.85 16 43 H 0.08 1.73 7.64 -51.93 -0.40 1.33 16 44 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -35.79 349.36 -7.27 -43.06 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.50 Total: 0.97 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.90 Total: 4.93 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.02 Total: -56.69 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.07 Total: -6.06 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.27 Total: 18.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.79 -7.27 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034297016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.689 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds