Wall clock time and date at job start Tue Mar 31 2020 23:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46807 * 275.28302 * 3 2 1 5 5 H 1.48501 * 109.47200 * 35.28213 * 3 2 1 6 6 H 1.48500 * 109.47360 * 155.28304 * 3 2 1 7 7 C 1.38818 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99720 * 337.60305 * 7 2 1 9 9 N 1.36932 * 120.00277 * 157.60410 * 7 2 1 10 10 C 1.43439 * 120.53692 * 320.87992 * 9 7 2 11 11 C 1.54901 * 116.08172 * 271.55240 * 10 9 7 12 12 C 1.54839 * 110.14287 * 318.63778 * 11 10 9 13 13 C 1.50133 * 110.81166 * 321.13757 * 12 11 10 14 14 C 1.52518 * 105.42115 * 97.68056 * 13 12 11 15 15 H 1.09008 * 108.52154 * 31.83935 * 14 13 12 16 16 N 1.46496 * 108.40276 * 149.43807 * 14 13 12 17 17 C 1.34773 * 120.00403 * 207.35321 * 16 14 13 18 18 O 1.21550 * 120.00040 * 0.02562 * 17 16 14 19 19 C 1.47839 * 120.00349 * 180.02562 * 17 16 14 20 20 C 1.40027 * 120.55985 * 355.55154 * 19 17 16 21 21 C 1.38348 * 118.29191 * 179.73422 * 20 19 17 22 22 C 1.38361 * 119.30473 * 0.53851 * 21 20 19 23 23 N 1.31921 * 121.07281 * 359.72329 * 22 21 20 24 24 C 1.31692 * 121.88729 * 359.97438 * 23 22 21 25 25 C 1.50704 * 119.72403 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47174 * 122.00273 * 25 24 23 27 27 F 1.39896 * 109.47066 * 242.00687 * 25 24 23 28 28 C 1.46237 * 114.27915 * 270.59493 * 14 13 12 29 29 H 0.97000 * 120.00146 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.15592 * 33.26973 * 10 9 7 31 31 H 1.09000 * 108.15585 * 149.82961 * 10 9 7 32 32 H 1.08997 * 109.35664 * 78.84443 * 11 10 9 33 33 H 1.08995 * 109.35424 * 198.56691 * 11 10 9 34 34 H 1.08995 * 109.20930 * 81.47284 * 12 11 10 35 35 H 1.08993 * 109.21260 * 200.79005 * 12 11 10 36 36 H 1.08997 * 110.24708 * 338.70244 * 13 12 11 37 37 H 1.08998 * 110.24375 * 216.65537 * 13 12 11 38 38 H 0.97002 * 120.00344 * 27.35643 * 16 14 13 39 39 H 1.08007 * 120.85068 * 359.97434 * 20 19 17 40 40 H 1.08001 * 120.35038 * 180.23666 * 21 20 19 41 41 H 1.07996 * 119.46424 * 179.74557 * 22 21 20 42 42 H 1.09004 * 109.46521 * 2.00202 * 25 24 23 43 43 H 1.09003 * 109.84672 * 177.90984 * 28 14 13 44 44 H 1.09000 * 109.84359 * 298.89668 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3860 2.1108 -1.3942 5 1 1.5080 2.6179 0.8087 6 1 3.5991 1.4105 0.5854 7 6 2.0103 -1.2022 0.0005 8 1 1.5313 -2.1020 0.3573 9 7 3.3021 -1.2472 -0.4512 10 6 3.7012 -0.4796 -1.5954 11 6 3.5282 -1.1687 -2.9718 12 6 3.9591 -2.6532 -2.8828 13 6 5.1722 -2.8052 -2.0114 14 6 4.6396 -3.2197 -0.6436 15 1 3.7360 -3.8119 -0.7888 16 7 5.6457 -4.0612 0.0088 17 6 5.2675 -4.9831 0.9163 18 8 4.0914 -5.1166 1.1931 19 6 6.2828 -5.8319 1.5752 20 6 7.6293 -5.7532 1.1990 21 6 8.5407 -6.5650 1.8504 22 6 8.0954 -7.4287 2.8354 23 7 6.8193 -7.4853 3.1653 24 6 5.9149 -6.7288 2.5787 25 6 4.4701 -6.8330 2.9943 26 9 4.0172 -5.5813 3.4248 27 9 3.7012 -7.2581 1.9057 28 6 4.3242 -2.1005 0.2432 29 1 -0.4850 0.8400 0.0004 30 1 3.1231 0.4444 -1.6030 31 1 4.7521 -0.2153 -1.4773 32 1 2.4826 -1.1135 -3.2746 33 1 4.1459 -0.6589 -3.7112 34 1 3.1412 -3.2396 -2.4642 35 1 4.1877 -3.0210 -3.8831 36 1 5.7047 -1.8571 -1.9375 37 1 5.8289 -3.5782 -2.4106 38 1 6.5842 -3.9550 -0.2122 39 1 7.9488 -5.0733 0.4229 40 1 9.5881 -6.5287 1.5895 41 1 8.8040 -8.0665 3.3427 42 1 4.3771 -7.5526 3.8078 43 1 3.9166 -2.4757 1.1820 44 1 5.2240 -1.5166 0.4365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034297016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:12 Heat of formation + Delta-G solvation = -81.536982 kcal Electronic energy + Delta-G solvation = -30793.947461 eV Core-core repulsion = 26382.414451 eV Total energy + Delta-G solvation = -4411.533010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.86360 -47.88230 -41.85909 -40.70984 -39.22851 -36.30573 -34.95193 -34.02671 -33.36599 -33.22932 -31.45839 -28.27133 -27.88439 -26.18254 -25.75399 -24.75106 -23.41104 -22.09931 -21.73043 -20.97641 -19.27938 -18.61624 -18.53159 -18.24386 -18.15328 -17.72519 -17.29602 -16.70105 -16.43165 -16.11486 -15.84179 -15.72565 -15.67139 -15.01541 -14.81547 -14.65463 -14.62052 -14.48198 -14.21141 -14.15822 -14.08038 -13.78242 -13.51407 -13.29390 -13.22525 -12.88299 -12.61121 -12.34691 -12.14285 -11.93588 -11.72059 -11.67643 -11.38298 -11.18315 -11.14925 -11.11361 -10.71976 -10.59246 -10.42075 -10.13212 -8.73164 -8.22349 -5.64214 -0.58666 -0.03278 1.28449 1.39220 1.51602 1.79186 1.97916 2.35738 2.40114 2.61830 3.03016 3.20372 3.25918 3.37840 3.60804 3.69356 3.73867 3.89937 4.03535 4.06179 4.11166 4.12595 4.27847 4.37475 4.39040 4.42317 4.47645 4.56901 4.81485 4.82932 4.93890 4.94277 4.99447 5.04089 5.22429 5.24149 5.32618 5.42664 5.43905 5.52795 5.55550 5.93743 6.14065 6.48614 6.61628 6.98747 7.22053 7.59112 8.03495 8.98326 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.003572 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.559175 B = 7837.708710 C = 8615.022965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.020 4.020 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.308 1.308 6 H -0.257 1.257 7 C -0.260 4.260 8 H 0.017 0.983 9 N -0.605 5.605 10 C 0.136 3.864 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.104 4.104 14 C 0.146 3.854 15 H 0.042 0.958 16 N -0.702 5.702 17 C 0.536 3.464 18 O -0.553 6.553 19 C -0.166 4.166 20 C -0.041 4.041 21 C -0.136 4.136 22 C 0.117 3.883 23 N -0.481 5.481 24 C 0.079 3.921 25 C 0.321 3.679 26 F -0.205 7.205 27 F -0.203 7.203 28 C 0.135 3.865 29 H 0.264 0.736 30 H 0.018 0.982 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.181 0.819 40 H 0.199 0.801 41 H 0.208 0.792 42 H 0.149 0.851 43 H 0.030 0.970 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.838 -13.373 -0.674 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.216 4.216 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.237 1.237 6 H -0.181 1.181 7 C -0.390 4.390 8 H 0.035 0.965 9 N -0.329 5.329 10 C 0.010 3.990 11 C -0.179 4.179 12 C -0.142 4.142 13 C -0.142 4.142 14 C 0.040 3.960 15 H 0.060 0.940 16 N -0.357 5.357 17 C 0.322 3.678 18 O -0.431 6.431 19 C -0.172 4.172 20 C -0.066 4.066 21 C -0.155 4.155 22 C -0.040 4.040 23 N -0.190 5.190 24 C -0.060 4.060 25 C 0.266 3.734 26 F -0.187 7.187 27 F -0.184 7.184 28 C 0.011 3.989 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.255 0.745 39 H 0.198 0.802 40 H 0.216 0.784 41 H 0.225 0.775 42 H 0.166 0.834 43 H 0.049 0.951 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 26.544 -13.921 0.170 29.973 hybrid contribution -0.719 1.392 -0.372 1.611 sum 25.825 -12.529 -0.202 28.704 Atomic orbital electron populations 1.70033 1.08048 1.27638 1.53732 1.26188 0.95686 1.01638 0.98073 0.85631 0.79164 0.79058 0.77624 1.19314 1.23701 1.18149 1.18476 0.88221 0.92489 1.39783 0.96503 1.44051 1.06172 1.54283 1.28368 1.20906 0.98213 0.92922 0.87005 1.22773 1.00081 0.96851 0.98151 1.21256 0.96872 0.96003 1.00077 1.21300 0.97888 1.03509 0.91479 1.20519 0.90677 0.91146 0.93613 0.93954 1.45973 1.11576 1.36299 1.41812 1.18617 0.88207 0.80894 0.80092 1.90950 1.20040 1.69355 1.62749 1.20830 0.96481 0.99889 0.99958 1.22274 0.89328 0.97148 0.97895 1.22800 1.03316 0.94302 0.95107 1.23834 0.90651 0.95784 0.93754 1.67339 1.03808 1.21401 1.26448 1.21627 0.95732 0.94263 0.94419 1.20351 0.83961 0.82321 0.86722 1.93016 1.90089 1.45788 1.89774 1.92994 1.77086 1.89655 1.58682 1.20740 0.91901 0.91894 0.94394 0.92703 0.96417 0.91467 0.95352 0.89019 0.95547 0.90131 0.88896 0.87862 0.74541 0.80209 0.78427 0.77493 0.83384 0.95091 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.87 13.97 21.65 0.30 -62.57 16 2 C -0.02 -1.20 5.31 84.86 0.45 -0.75 16 3 Si 0.96 47.90 25.15 68.60 1.73 49.63 16 4 H -0.27 -12.39 6.73 99.48 0.67 -11.72 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 6 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.26 -16.00 9.94 84.04 0.84 -15.16 16 8 H 0.02 1.23 8.06 -2.91 -0.02 1.20 16 9 N -0.60 -29.53 2.16 -707.83 -1.53 -31.05 16 10 C 0.14 5.57 4.20 87.59 0.37 5.93 16 11 C -0.14 -4.81 6.41 31.87 0.20 -4.60 16 12 C -0.10 -3.20 5.65 30.30 0.17 -3.03 16 13 C -0.10 -2.55 5.23 29.51 0.15 -2.40 16 14 C 0.15 4.90 1.99 42.75 0.08 4.98 16 15 H 0.04 1.88 6.31 -2.38 -0.02 1.87 16 16 N -0.70 -17.95 4.86 -456.23 -2.22 -20.17 16 17 C 0.54 17.22 7.40 86.79 0.64 17.86 16 18 O -0.55 -24.43 10.70 -3.87 -0.04 -24.47 16 19 C -0.17 -3.95 5.85 -19.99 -0.12 -4.06 16 20 C -0.04 -0.47 9.64 22.73 0.22 -0.25 16 21 C -0.14 -0.84 10.10 22.33 0.23 -0.62 16 22 C 0.12 1.18 11.17 84.71 0.95 2.13 16 23 N -0.48 -9.54 10.24 -182.84 -1.87 -11.41 16 24 C 0.08 2.04 6.31 42.89 0.27 2.31 16 25 C 0.32 9.94 5.02 71.24 0.36 10.30 16 26 F -0.21 -7.99 14.97 44.97 0.67 -7.31 16 27 F -0.20 -7.57 15.10 44.97 0.68 -6.89 16 28 C 0.14 5.57 5.50 83.58 0.46 6.03 16 29 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 30 H 0.02 0.82 3.21 -2.39 -0.01 0.81 16 31 H 0.07 2.25 6.89 -2.39 -0.02 2.23 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 34 H 0.03 1.03 6.83 -2.39 -0.02 1.02 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.99 6.29 -2.39 -0.02 1.97 16 37 H 0.10 1.75 8.03 -2.39 -0.02 1.73 16 38 H 0.42 6.10 6.70 -92.71 -0.62 5.48 16 39 H 0.18 0.70 6.55 -2.91 -0.02 0.68 16 40 H 0.20 -0.67 8.06 -2.91 -0.02 -0.69 16 41 H 0.21 0.34 8.06 -2.91 -0.02 0.31 16 42 H 0.15 3.45 8.11 -2.38 -0.02 3.43 16 43 H 0.03 1.52 7.64 -2.39 -0.02 1.51 16 44 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 Total: -1.00 -92.26 349.36 3.39 -88.87 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.40 Total: 6.71 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 5.27 Total: 18.67 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.31 Total: -125.20 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.47 kcal Atomic # 9 Polarization: -15.55 SS G_CDS: 1.35 Total: -14.20 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.73 Total: 49.63 kcal Total: -92.26 3.39 -88.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034297016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.331 kcal (2) G-P(sol) polarization free energy of solvation -92.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds