Wall clock time and date at job start Tue Mar 31 2020 23:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48497 * 109.47177 * 95.16252 * 3 2 1 5 5 H 1.48498 * 109.47210 * 335.16287 * 3 2 1 6 6 H 1.48494 * 109.47010 * 215.16455 * 3 2 1 7 7 C 1.38817 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 19.81942 * 7 2 1 9 9 N 1.36933 * 120.00292 * 199.81559 * 7 2 1 10 10 C 1.44572 * 118.64485 * 211.90571 * 9 7 2 11 11 C 1.54863 * 109.60277 * 270.70398 * 10 9 7 12 12 C 1.47092 * 110.32415 * 288.73768 * 11 10 9 13 13 C 1.52571 * 114.32859 * 62.79486 * 12 11 10 14 14 C 1.50880 * 109.36241 * 274.99307 * 13 12 11 15 15 H 1.09009 * 109.36088 * 331.82023 * 14 13 12 16 16 N 1.46496 * 109.36854 * 212.07846 * 14 13 12 17 17 C 1.34775 * 119.99903 * 154.99961 * 16 14 13 18 18 O 1.21552 * 120.00606 * 359.97438 * 17 16 14 19 19 C 1.47842 * 119.99756 * 180.02562 * 17 16 14 20 20 C 1.40028 * 120.56254 * 359.71959 * 19 17 16 21 21 C 1.38356 * 118.29006 * 179.74086 * 20 19 17 22 22 C 1.38352 * 119.30346 * 0.55640 * 21 20 19 23 23 N 1.31922 * 121.07628 * 359.70294 * 22 21 20 24 24 C 1.31689 * 121.88578 * 359.97438 * 23 22 21 25 25 C 1.50700 * 119.71943 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.46825 * 120.02732 * 25 24 23 27 27 F 1.39898 * 109.47360 * 240.02457 * 25 24 23 28 28 C 1.47609 * 118.64090 * 31.63664 * 9 7 2 29 29 H 0.97001 * 119.99644 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.45063 * 30.74813 * 10 9 7 31 31 H 1.09009 * 109.45050 * 150.69400 * 10 9 7 32 32 H 1.09000 * 109.32662 * 48.99639 * 11 10 9 33 33 H 1.08994 * 109.33467 * 168.64415 * 11 10 9 34 34 H 1.08997 * 108.51483 * 184.05370 * 12 11 10 35 35 H 1.09005 * 108.51013 * 301.69868 * 12 11 10 36 36 H 1.09007 * 109.48783 * 34.95671 * 13 12 11 37 37 H 1.08997 * 109.49067 * 155.02678 * 13 12 11 38 38 H 0.97005 * 119.99866 * 334.99600 * 16 14 13 39 39 H 1.08005 * 120.84964 * 0.02562 * 20 19 17 40 40 H 1.08005 * 120.34303 * 180.25868 * 21 20 19 41 41 H 1.07997 * 119.45708 * 179.68594 * 22 21 20 42 42 H 1.08992 * 109.47053 * 0.02902 * 25 24 23 43 43 H 1.08996 * 108.94750 * 258.57445 * 28 9 7 44 44 H 1.08998 * 108.94823 * 17.20444 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6069 1.9834 1.3944 5 1 1.3974 2.6817 -0.5881 6 1 3.4889 1.4741 -0.8063 7 6 2.0103 -1.2022 0.0005 8 1 1.5182 -2.1099 -0.3162 9 7 3.3188 -1.2372 0.4025 10 6 4.2055 -2.2027 -0.2070 11 6 4.1668 -3.5248 0.5986 12 6 4.8425 -3.3537 1.8939 13 6 4.1853 -2.3305 2.8153 14 6 4.6929 -0.9513 2.4742 15 1 5.6979 -1.0285 2.0590 16 7 4.7307 -0.1332 3.6889 17 6 5.5782 0.9115 3.7717 18 8 6.3114 1.1748 2.8387 19 6 5.6167 1.7366 4.9978 20 6 4.7739 1.4469 6.0778 21 6 4.8529 2.2464 7.2042 22 6 5.7452 3.3036 7.2229 23 7 6.5235 3.5562 6.1880 24 6 6.4897 2.8206 5.0963 25 6 7.4003 3.1535 3.9426 26 9 8.2381 2.0642 3.6804 27 9 6.6318 3.4344 2.8079 28 6 3.7672 -0.2834 1.4361 29 1 -0.4850 0.8401 -0.0004 30 1 3.8861 -2.3926 -1.2317 31 1 5.2224 -1.8101 -0.2107 32 1 3.1296 -3.8137 0.7681 33 1 4.6712 -4.3075 0.0321 34 1 4.8619 -4.3167 2.4040 35 1 5.8701 -3.0403 1.7095 36 1 3.1039 -2.3632 2.6824 37 1 4.4319 -2.5628 3.8513 38 1 4.1458 -0.3435 4.4336 39 1 4.0832 0.6177 6.0344 40 1 4.2213 2.0502 8.0580 41 1 5.8054 3.9324 8.0988 42 1 8.0050 4.0241 4.1965 43 1 4.3022 0.5349 0.9543 44 1 2.8937 0.1200 1.9483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034297018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:16 Heat of formation + Delta-G solvation = -65.796631 kcal Electronic energy + Delta-G solvation = -31056.884771 eV Core-core repulsion = 26646.034313 eV Total energy + Delta-G solvation = -4410.850457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.73325 -46.71160 -40.93757 -39.42261 -37.82012 -34.76620 -33.71840 -33.22474 -32.44883 -31.25811 -30.21063 -27.08781 -26.18956 -25.08671 -24.69577 -23.12981 -22.37762 -20.82769 -20.27770 -19.55082 -18.30621 -17.68597 -17.35099 -17.03177 -16.75916 -16.38175 -15.78441 -15.47487 -15.36798 -14.93901 -14.82890 -14.32917 -14.24408 -13.79936 -13.52341 -13.40797 -13.32224 -13.12411 -13.05444 -12.96858 -12.79402 -12.29021 -12.08292 -11.78476 -11.51933 -11.43033 -11.34878 -10.62652 -10.57566 -10.43087 -10.32879 -10.25349 -10.09820 -9.98993 -9.90096 -9.72851 -9.66650 -9.45172 -8.81850 -8.52410 -6.85409 -5.98155 -3.38116 0.17985 0.61473 2.71263 3.07239 3.19503 3.38355 3.45350 3.52695 3.61658 4.02129 4.19978 4.27637 4.35754 4.54299 4.56868 4.81317 4.89820 4.99424 5.10125 5.11255 5.17767 5.24824 5.42242 5.43666 5.49042 5.55014 5.70409 5.77107 5.95602 5.98307 6.19484 6.24190 6.36364 6.40873 6.51643 6.57409 6.62574 6.74264 6.82111 6.87782 7.05325 7.27073 7.55484 8.03653 8.24214 8.37075 9.00909 9.73641 10.07829 11.17411 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004256 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.491037 B = 6577.063826 C = 7091.890701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.273 1.273 7 C -0.268 4.268 8 H 0.084 0.916 9 N -0.598 5.598 10 C 0.154 3.846 11 C -0.146 4.146 12 C -0.099 4.099 13 C -0.117 4.117 14 C 0.132 3.868 15 H 0.084 0.916 16 N -0.712 5.712 17 C 0.547 3.453 18 O -0.504 6.504 19 C -0.142 4.142 20 C -0.046 4.046 21 C -0.158 4.158 22 C 0.117 3.883 23 N -0.463 5.463 24 C 0.100 3.900 25 C 0.337 3.663 26 F -0.182 7.182 27 F -0.179 7.179 28 C 0.124 3.876 29 H 0.262 0.738 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.395 0.605 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.122 0.878 43 H 0.027 0.973 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.027 1.880 17.027 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.167 4.167 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.198 1.198 7 C -0.396 4.396 8 H 0.102 0.898 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.186 4.186 12 C -0.137 4.137 13 C -0.155 4.155 14 C 0.027 3.973 15 H 0.102 0.898 16 N -0.364 5.364 17 C 0.331 3.669 18 O -0.379 6.379 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.177 4.177 22 C -0.040 4.040 23 N -0.171 5.171 24 C -0.040 4.040 25 C 0.282 3.718 26 F -0.163 7.163 27 F -0.160 7.160 28 C -0.002 4.002 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.230 0.770 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.139 0.861 43 H 0.045 0.955 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.004 2.836 16.297 21.041 hybrid contribution -0.679 0.167 0.463 0.839 sum 12.324 3.003 16.760 21.019 Atomic orbital electron populations 1.69844 1.05804 1.26625 1.52497 1.25378 0.95126 0.97552 0.98688 0.87056 0.79487 0.84386 0.77846 1.21540 1.23218 1.19850 1.18900 0.85260 0.94418 1.41059 0.89796 1.43833 1.08432 1.39428 1.40330 1.20820 0.92891 0.88361 0.95247 1.21444 1.01026 0.99777 0.96374 1.20235 0.99231 0.97781 0.96486 1.21291 1.03125 0.93004 0.98080 1.21666 1.01277 0.90030 0.84319 0.89788 1.46047 1.40452 1.30603 1.19262 1.17948 0.81419 0.81013 0.86499 1.90899 1.40560 1.68357 1.38060 1.20991 0.99005 0.98201 0.96550 1.21887 0.95455 0.98316 0.91584 1.22267 1.00059 0.96140 0.99258 1.22990 0.90249 0.94856 0.95918 1.67333 1.22603 1.27595 0.99613 1.21911 0.95709 0.91749 0.94678 1.19801 0.84013 0.87896 0.80074 1.93045 1.71170 1.57768 1.94355 1.93085 1.76844 1.93568 1.52542 1.22079 0.96736 0.92025 0.89374 0.92781 0.92569 0.94643 0.91578 0.93029 0.93287 0.93103 0.89511 0.92627 0.76980 0.83491 0.83266 0.81340 0.86091 0.95512 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.54 13.97 55.49 0.78 -26.77 16 2 C 0.03 0.93 5.13 -17.43 -0.09 0.84 16 3 Si 0.88 23.61 24.11 -169.99 -4.10 19.52 16 4 H -0.29 -7.58 6.47 56.52 0.37 -7.22 16 5 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 6 H -0.27 -7.48 7.00 56.52 0.40 -7.09 16 7 C -0.27 -7.36 9.81 -15.06 -0.15 -7.50 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.60 -14.05 1.97 -171.88 -0.34 -14.39 16 10 C 0.15 3.06 5.65 -4.09 -0.02 3.04 16 11 C -0.15 -2.43 5.74 -28.58 -0.16 -2.59 16 12 C -0.10 -1.48 5.16 -29.79 -0.15 -1.63 16 13 C -0.12 -1.81 5.07 -28.01 -0.14 -1.95 16 14 C 0.13 2.34 2.27 -68.32 -0.15 2.18 16 15 H 0.08 1.58 6.75 -51.92 -0.35 1.23 16 16 N -0.71 -10.89 4.94 -55.13 -0.27 -11.16 16 17 C 0.55 9.18 7.54 -12.33 -0.09 9.08 16 18 O -0.50 -10.20 11.00 5.32 0.06 -10.14 16 19 C -0.14 -1.94 5.85 -104.82 -0.61 -2.55 16 20 C -0.05 -0.44 9.65 -38.87 -0.37 -0.82 16 21 C -0.16 -1.14 10.10 -39.50 -0.40 -1.54 16 22 C 0.12 0.95 11.17 -17.47 -0.20 0.76 16 23 N -0.46 -5.30 10.24 -9.15 -0.09 -5.40 16 24 C 0.10 1.36 6.31 -82.17 -0.52 0.84 16 25 C 0.34 4.84 5.02 36.01 0.18 5.02 16 26 F -0.18 -2.96 15.03 2.25 0.03 -2.93 16 27 F -0.18 -3.20 15.03 2.25 0.03 -3.17 16 28 C 0.12 2.79 3.58 -2.76 -0.01 2.78 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.06 1.14 7.99 -51.93 -0.41 0.72 16 31 H 0.04 0.68 8.06 -51.92 -0.42 0.26 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 36 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 37 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.40 4.67 6.65 -40.82 -0.27 4.40 16 39 H 0.15 1.03 6.52 -52.48 -0.34 0.69 16 40 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 1.28 8.11 -51.93 -0.42 0.86 16 43 H 0.03 0.68 6.11 -51.93 -0.32 0.36 16 44 H 0.07 1.70 5.65 -51.93 -0.29 1.41 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -35.21 350.43 -7.24 -42.46 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.73 Total: 0.72 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.90 Total: 5.97 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.07 Total: -57.71 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.06 Total: -10.14 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.07 Total: -6.10 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.10 Total: 19.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.21 -7.24 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034297018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.341 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds