Wall clock time and date at job start Tue Mar 31 2020 23:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48497 * 109.47177 * 95.16252 * 3 2 1 5 5 H 1.48498 * 109.47210 * 335.16287 * 3 2 1 6 6 H 1.48494 * 109.47010 * 215.16455 * 3 2 1 7 7 C 1.38817 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 19.81942 * 7 2 1 9 9 N 1.36933 * 120.00292 * 199.81559 * 7 2 1 10 10 C 1.44572 * 118.64485 * 211.90571 * 9 7 2 11 11 C 1.54863 * 109.60277 * 270.70398 * 10 9 7 12 12 C 1.47092 * 110.32415 * 288.73768 * 11 10 9 13 13 C 1.52571 * 114.32859 * 62.79486 * 12 11 10 14 14 C 1.50880 * 109.36241 * 274.99307 * 13 12 11 15 15 H 1.09009 * 109.36088 * 331.82023 * 14 13 12 16 16 N 1.46496 * 109.36854 * 212.07846 * 14 13 12 17 17 C 1.34775 * 119.99903 * 154.99961 * 16 14 13 18 18 O 1.21552 * 120.00606 * 359.97438 * 17 16 14 19 19 C 1.47842 * 119.99756 * 180.02562 * 17 16 14 20 20 C 1.40028 * 120.56254 * 359.71959 * 19 17 16 21 21 C 1.38356 * 118.29006 * 179.74086 * 20 19 17 22 22 C 1.38352 * 119.30346 * 0.55640 * 21 20 19 23 23 N 1.31922 * 121.07628 * 359.70294 * 22 21 20 24 24 C 1.31689 * 121.88578 * 359.97438 * 23 22 21 25 25 C 1.50700 * 119.71943 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.46825 * 120.02732 * 25 24 23 27 27 F 1.39898 * 109.47360 * 240.02457 * 25 24 23 28 28 C 1.47609 * 118.64090 * 31.63664 * 9 7 2 29 29 H 0.97001 * 119.99644 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.45063 * 30.74813 * 10 9 7 31 31 H 1.09009 * 109.45050 * 150.69400 * 10 9 7 32 32 H 1.09000 * 109.32662 * 48.99639 * 11 10 9 33 33 H 1.08994 * 109.33467 * 168.64415 * 11 10 9 34 34 H 1.08997 * 108.51483 * 184.05370 * 12 11 10 35 35 H 1.09005 * 108.51013 * 301.69868 * 12 11 10 36 36 H 1.09007 * 109.48783 * 34.95671 * 13 12 11 37 37 H 1.08997 * 109.49067 * 155.02678 * 13 12 11 38 38 H 0.97005 * 119.99866 * 334.99600 * 16 14 13 39 39 H 1.08005 * 120.84964 * 0.02562 * 20 19 17 40 40 H 1.08005 * 120.34303 * 180.25868 * 21 20 19 41 41 H 1.07997 * 119.45708 * 179.68594 * 22 21 20 42 42 H 1.08992 * 109.47053 * 0.02902 * 25 24 23 43 43 H 1.08996 * 108.94750 * 258.57445 * 28 9 7 44 44 H 1.08998 * 108.94823 * 17.20444 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6069 1.9834 1.3944 5 1 1.3974 2.6817 -0.5881 6 1 3.4889 1.4741 -0.8063 7 6 2.0103 -1.2022 0.0005 8 1 1.5182 -2.1099 -0.3162 9 7 3.3188 -1.2372 0.4025 10 6 4.2055 -2.2027 -0.2070 11 6 4.1668 -3.5248 0.5986 12 6 4.8425 -3.3537 1.8939 13 6 4.1853 -2.3305 2.8153 14 6 4.6929 -0.9513 2.4742 15 1 5.6979 -1.0285 2.0590 16 7 4.7307 -0.1332 3.6889 17 6 5.5782 0.9115 3.7717 18 8 6.3114 1.1748 2.8387 19 6 5.6167 1.7366 4.9978 20 6 4.7739 1.4469 6.0778 21 6 4.8529 2.2464 7.2042 22 6 5.7452 3.3036 7.2229 23 7 6.5235 3.5562 6.1880 24 6 6.4897 2.8206 5.0963 25 6 7.4003 3.1535 3.9426 26 9 8.2381 2.0642 3.6804 27 9 6.6318 3.4344 2.8079 28 6 3.7672 -0.2834 1.4361 29 1 -0.4850 0.8401 -0.0004 30 1 3.8861 -2.3926 -1.2317 31 1 5.2224 -1.8101 -0.2107 32 1 3.1296 -3.8137 0.7681 33 1 4.6712 -4.3075 0.0321 34 1 4.8619 -4.3167 2.4040 35 1 5.8701 -3.0403 1.7095 36 1 3.1039 -2.3632 2.6824 37 1 4.4319 -2.5628 3.8513 38 1 4.1458 -0.3435 4.4336 39 1 4.0832 0.6177 6.0344 40 1 4.2213 2.0502 8.0580 41 1 5.8054 3.9324 8.0988 42 1 8.0050 4.0241 4.1965 43 1 4.3022 0.5349 0.9543 44 1 2.8937 0.1200 1.9483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034297018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:15 Heat of formation + Delta-G solvation = -90.745456 kcal Electronic energy + Delta-G solvation = -31057.966633 eV Core-core repulsion = 26646.034313 eV Total energy + Delta-G solvation = -4411.932319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.90629 -47.91774 -41.88209 -40.63105 -39.28799 -36.27718 -35.31813 -34.13092 -33.32200 -33.30789 -31.55669 -28.23257 -27.84030 -26.49908 -25.80932 -24.60581 -23.42845 -22.14169 -21.65315 -21.13617 -19.30631 -18.75986 -18.64816 -18.37812 -18.19942 -17.70363 -17.23950 -16.81415 -16.37576 -16.26307 -16.09023 -15.87105 -15.64681 -14.93160 -14.87364 -14.70844 -14.64733 -14.51501 -14.27843 -14.21183 -14.13870 -13.79521 -13.53981 -13.29680 -13.24034 -13.11965 -12.47547 -12.41628 -12.26940 -12.03432 -11.83553 -11.65513 -11.46055 -11.26368 -11.21416 -11.18445 -10.78420 -10.73978 -10.48551 -10.17216 -8.84848 -8.25755 -5.59002 -0.66406 -0.10814 1.18493 1.29543 1.40021 1.66696 1.89756 2.30724 2.31256 2.54242 2.98821 3.16322 3.24117 3.32475 3.51038 3.64131 3.73730 3.83489 3.94377 3.99880 4.06672 4.14281 4.19974 4.25926 4.31500 4.32823 4.45010 4.70133 4.73720 4.76220 4.85285 4.89265 4.93552 4.99167 5.25460 5.26004 5.30682 5.36022 5.38298 5.48898 5.64093 5.88389 6.12705 6.35304 6.53797 6.92908 7.04966 7.60729 7.97565 8.94163 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004256 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.491037 B = 6577.063826 C = 7091.890701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.009 4.009 3 Si 0.929 3.071 4 H -0.287 1.287 5 H -0.307 1.307 6 H -0.289 1.289 7 C -0.244 4.244 8 H 0.064 0.936 9 N -0.606 5.606 10 C 0.143 3.857 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.109 4.109 14 C 0.147 3.853 15 H 0.075 0.925 16 N -0.704 5.704 17 C 0.541 3.459 18 O -0.548 6.548 19 C -0.172 4.172 20 C -0.046 4.046 21 C -0.137 4.137 22 C 0.121 3.879 23 N -0.477 5.477 24 C 0.081 3.919 25 C 0.324 3.676 26 F -0.198 7.198 27 F -0.207 7.207 28 C 0.130 3.870 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.413 0.587 39 H 0.172 0.828 40 H 0.197 0.803 41 H 0.212 0.788 42 H 0.154 0.846 43 H -0.007 1.007 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.763 1.091 20.789 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.205 4.205 3 Si 0.761 3.239 4 H -0.214 1.214 5 H -0.235 1.235 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.082 0.918 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.147 4.147 14 C 0.041 3.959 15 H 0.093 0.907 16 N -0.357 5.357 17 C 0.327 3.673 18 O -0.427 6.427 19 C -0.178 4.178 20 C -0.072 4.072 21 C -0.156 4.156 22 C -0.036 4.036 23 N -0.186 5.186 24 C -0.059 4.059 25 C 0.269 3.731 26 F -0.180 7.180 27 F -0.188 7.188 28 C 0.004 3.996 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.252 0.748 39 H 0.189 0.811 40 H 0.214 0.786 41 H 0.228 0.772 42 H 0.171 0.829 43 H 0.011 0.989 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.760 2.025 20.094 24.438 hybrid contribution -0.865 0.414 -0.623 1.143 sum 12.895 2.438 19.471 23.481 Atomic orbital electron populations 1.69905 1.06692 1.26946 1.55337 1.25725 0.95456 0.99286 1.00075 0.86299 0.77654 0.82476 0.77463 1.21393 1.23504 1.21504 1.18889 0.86642 0.93275 1.38640 0.91813 1.43944 1.07591 1.40070 1.41333 1.21070 0.92403 0.89375 0.95379 1.21286 1.00621 0.97984 0.97308 1.20255 0.99010 0.99139 0.95520 1.21249 1.01388 0.91451 1.00593 1.21288 0.99266 0.91191 0.84127 0.90735 1.45889 1.40668 1.30179 1.18923 1.18556 0.80596 0.80958 0.87196 1.90870 1.42340 1.69465 1.39984 1.20841 1.01561 0.98789 0.96609 1.22264 0.94654 0.99298 0.90967 1.22797 0.99193 0.94242 0.99407 1.23849 0.88781 0.95184 0.95812 1.67367 1.23913 1.27549 0.99799 1.21720 0.96259 0.92707 0.95205 1.20340 0.84514 0.88505 0.79697 1.92992 1.71652 1.58793 1.94516 1.93014 1.77687 1.93737 1.54348 1.21900 0.96351 0.91411 0.89962 0.92846 0.93500 0.93787 0.93418 0.90146 0.90092 0.92404 0.91942 0.88790 0.74827 0.81053 0.78583 0.77174 0.82884 0.98901 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.82 13.97 21.65 0.30 -58.51 16 2 C -0.01 -0.54 5.13 84.86 0.44 -0.11 16 3 Si 0.93 50.86 24.11 68.60 1.65 52.51 16 4 H -0.29 -15.39 6.47 99.48 0.64 -14.75 16 5 H -0.31 -16.73 7.11 99.48 0.71 -16.02 16 6 H -0.29 -16.31 7.00 99.48 0.70 -15.61 16 7 C -0.24 -13.76 9.81 84.04 0.82 -12.94 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 9 N -0.61 -28.98 1.97 -697.69 -1.37 -30.35 16 10 C 0.14 5.68 5.65 87.38 0.49 6.17 16 11 C -0.13 -4.14 5.74 29.39 0.17 -3.97 16 12 C -0.10 -2.70 5.16 28.62 0.15 -2.55 16 13 C -0.11 -3.12 5.07 29.76 0.15 -2.96 16 14 C 0.15 5.13 2.27 44.74 0.10 5.23 16 15 H 0.07 2.79 6.75 -2.38 -0.02 2.77 16 16 N -0.70 -20.86 4.94 -446.61 -2.20 -23.06 16 17 C 0.54 18.21 7.54 86.79 0.65 18.86 16 18 O -0.55 -23.09 11.00 -3.88 -0.04 -23.13 16 19 C -0.17 -4.52 5.85 -19.99 -0.12 -4.64 16 20 C -0.05 -0.73 9.65 22.73 0.22 -0.51 16 21 C -0.14 -1.29 10.10 22.32 0.23 -1.07 16 22 C 0.12 1.43 11.17 84.71 0.95 2.38 16 23 N -0.48 -9.86 10.24 -182.85 -1.87 -11.74 16 24 C 0.08 2.14 6.31 42.89 0.27 2.41 16 25 C 0.32 9.57 5.02 71.24 0.36 9.92 16 26 F -0.20 -6.71 15.03 44.97 0.68 -6.04 16 27 F -0.21 -7.79 15.03 44.97 0.68 -7.12 16 28 C 0.13 5.97 3.58 86.61 0.31 6.28 16 29 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 31 H 0.04 1.67 8.06 -2.38 -0.02 1.65 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.51 7.35 -2.38 -0.02 1.49 16 36 H 0.06 2.14 7.49 -2.38 -0.02 2.12 16 37 H 0.09 2.00 7.94 -2.39 -0.02 1.98 16 38 H 0.41 8.86 6.65 -92.70 -0.62 8.24 16 39 H 0.17 1.71 6.52 -2.91 -0.02 1.69 16 40 H 0.20 0.05 8.06 -2.91 -0.02 0.02 16 41 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.15 3.28 8.11 -2.39 -0.02 3.26 16 43 H -0.01 -0.35 6.11 -2.39 -0.01 -0.37 16 44 H 0.05 2.43 5.65 -2.39 -0.01 2.42 16 Total: -1.00 -82.76 350.43 3.36 -79.39 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.36 Total: 5.52 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.19 Total: 22.52 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.15 Total: -123.66 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.04 Total: -23.13 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 1.35 Total: -13.15 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.65 Total: 52.51 kcal Total: -82.76 3.36 -79.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034297018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.351 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds