Wall clock time and date at job start Tue Mar 31 2020 23:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00206 * 2 1 4 4 H 1.48498 * 109.46867 * 274.99877 * 3 2 1 5 5 H 1.48498 * 109.46654 * 34.99717 * 3 2 1 6 6 H 1.48500 * 109.47106 * 154.99819 * 3 2 1 7 7 C 1.38812 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00435 * 205.92959 * 7 2 1 9 9 N 1.36944 * 119.99923 * 26.21041 * 7 2 1 10 10 C 1.44572 * 118.64453 * 5.07396 * 9 7 2 11 11 C 1.54861 * 109.60133 * 270.71165 * 10 9 7 12 12 C 1.47098 * 110.32096 * 288.72937 * 11 10 9 13 13 C 1.52568 * 114.32281 * 62.80193 * 12 11 10 14 14 H 1.08998 * 109.48720 * 34.98204 * 13 12 11 15 15 N 1.46500 * 109.48742 * 155.02334 * 13 12 11 16 16 C 1.34780 * 119.99955 * 205.00504 * 15 13 12 17 17 O 1.21548 * 119.99787 * 359.97438 * 16 15 13 18 18 C 1.47842 * 119.99928 * 180.02562 * 16 15 13 19 19 C 1.40021 * 120.55861 * 354.41223 * 18 16 15 20 20 C 1.38357 * 118.28772 * 179.97438 * 19 18 16 21 21 C 1.38356 * 119.30140 * 0.02562 * 20 19 18 22 22 N 1.31924 * 121.08259 * 359.97438 * 21 20 19 23 23 C 1.31702 * 121.87511 * 359.77137 * 22 21 20 24 24 C 1.50695 * 119.71284 * 180.24747 * 23 22 21 25 25 F 1.39897 * 109.47194 * 122.63968 * 24 23 22 26 26 F 1.39903 * 109.47020 * 242.64097 * 24 23 22 27 27 C 1.50880 * 109.35995 * 274.98669 * 13 12 11 28 28 C 1.47605 * 118.64271 * 184.81408 * 9 7 2 29 29 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.44858 * 30.74861 * 10 9 7 31 31 H 1.08996 * 109.44864 * 150.66833 * 10 9 7 32 32 H 1.08999 * 109.33136 * 48.99327 * 11 10 9 33 33 H 1.09004 * 109.32941 * 168.64848 * 11 10 9 34 34 H 1.08999 * 108.51029 * 184.05868 * 12 11 10 35 35 H 1.08998 * 108.51235 * 301.55123 * 12 11 10 36 36 H 0.96996 * 120.00254 * 24.99910 * 15 13 12 37 37 H 1.08000 * 120.85800 * 359.96003 * 19 18 16 38 38 H 1.08000 * 120.34867 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.45700 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47358 * 2.63686 * 24 23 22 41 41 H 1.09001 * 109.36289 * 212.07630 * 27 13 12 42 42 H 1.08997 * 109.36572 * 331.69828 * 27 13 12 43 43 H 1.09006 * 108.94123 * 258.57695 * 28 9 7 44 44 H 1.08999 * 108.94522 * 17.19759 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0086 -1.2492 0.4095 9 7 1.4310 -2.3274 -0.5228 10 6 0.1427 -2.2078 -1.1677 11 6 -0.9822 -2.3995 -0.1207 12 6 -1.0498 -3.8060 0.3047 13 6 0.2079 -4.3119 1.0047 14 1 0.6422 -3.5075 1.5983 15 7 -0.1382 -5.4339 1.8808 16 6 0.6360 -5.7207 2.9462 17 8 1.6215 -5.0487 3.1798 18 6 0.2870 -6.8533 3.8300 19 6 -0.9052 -7.5627 3.6410 20 6 -1.1847 -8.6147 4.4951 21 6 -0.2862 -8.9287 5.4992 22 7 0.8298 -8.2424 5.6537 23 6 1.1426 -7.2363 4.8634 24 6 2.4331 -6.4891 5.0805 25 9 3.2005 -6.5344 3.9117 26 9 2.1523 -5.1570 5.4028 27 6 1.2060 -4.7703 -0.0298 28 6 2.1506 -3.6112 -0.4102 29 1 -0.4851 0.8400 -0.0004 30 1 0.0533 -1.2198 -1.6196 31 1 0.0520 -2.9700 -1.9415 32 1 -0.7798 -1.7698 0.7457 33 1 -1.9372 -2.1120 -0.5605 34 1 -1.8943 -3.9218 0.9840 35 1 -1.2295 -4.4251 -0.5741 36 1 -0.9245 -5.9703 1.6943 37 1 -1.5892 -7.2955 2.8490 38 1 -2.0950 -9.1843 4.3796 39 1 -0.5020 -9.7491 6.1676 40 1 2.9876 -6.9513 5.8973 41 1 1.7916 -5.5962 0.3741 42 1 0.6749 -5.1074 -0.9199 43 1 2.6252 -3.8357 -1.3655 44 1 2.9228 -3.5183 0.3535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052550954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:33 Heat of formation + Delta-G solvation = -53.451142 kcal Electronic energy + Delta-G solvation = -30882.608493 eV Core-core repulsion = 26472.293376 eV Total energy + Delta-G solvation = -4410.315117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.67424 -46.65361 -40.90795 -39.32324 -37.50996 -34.83630 -33.47815 -32.49881 -31.89620 -31.75050 -29.64863 -27.10236 -26.04608 -24.94079 -23.91555 -23.06629 -22.47157 -20.67571 -20.06000 -19.12860 -18.21531 -17.65530 -17.23952 -16.97144 -16.59864 -16.18831 -15.53470 -15.32351 -15.26902 -14.95227 -14.64546 -14.05422 -13.86543 -13.62883 -13.45721 -13.36300 -13.25494 -13.11828 -12.94419 -12.57316 -12.24650 -12.06710 -11.92345 -11.60474 -11.33108 -11.12898 -10.77911 -10.64477 -10.41793 -10.24034 -10.20205 -9.96609 -9.87177 -9.78596 -9.65228 -9.64321 -9.50765 -9.22020 -8.73853 -8.17592 -6.77301 -5.64415 -2.95634 0.20289 0.61482 2.76943 3.18162 3.23135 3.47732 3.49917 3.55690 3.57331 4.04436 4.23037 4.29201 4.39113 4.59564 4.60704 4.81987 4.95946 5.12357 5.15291 5.33991 5.42425 5.44743 5.50361 5.54662 5.69125 5.93455 5.98200 6.07869 6.13932 6.24295 6.47677 6.64084 6.71739 6.83130 6.88009 6.94750 7.11344 7.17568 7.28122 7.28883 7.68128 7.77657 7.87632 8.22844 8.36944 8.46755 9.38587 10.00149 10.39455 11.35194 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003449 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.758865 B = 8116.284506 C = 8915.243582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.004 4.004 3 Si 0.892 3.108 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.599 5.599 10 C 0.184 3.816 11 C -0.121 4.121 12 C -0.110 4.110 13 C 0.156 3.844 14 H 0.107 0.893 15 N -0.717 5.717 16 C 0.543 3.457 17 O -0.495 6.495 18 C -0.140 4.140 19 C -0.048 4.048 20 C -0.159 4.159 21 C 0.115 3.885 22 N -0.463 5.463 23 C 0.100 3.900 24 C 0.337 3.663 25 F -0.182 7.182 26 F -0.178 7.178 27 C -0.138 4.138 28 C 0.155 3.845 29 H 0.249 0.751 30 H 0.081 0.919 31 H 0.001 0.999 32 H 0.105 0.895 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.389 0.611 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.169 0.831 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -20.246 7.843 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.200 4.200 3 Si 0.723 3.277 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.322 5.322 10 C 0.058 3.942 11 C -0.161 4.161 12 C -0.148 4.148 13 C 0.053 3.947 14 H 0.125 0.875 15 N -0.368 5.368 16 C 0.327 3.673 17 O -0.369 6.369 18 C -0.145 4.145 19 C -0.075 4.075 20 C -0.179 4.179 21 C -0.042 4.042 22 N -0.171 5.171 23 C -0.041 4.041 24 C 0.282 3.718 25 F -0.163 7.163 26 F -0.159 7.159 27 C -0.178 4.178 28 C 0.028 3.972 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.019 0.981 32 H 0.123 0.877 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.222 0.778 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.186 0.814 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.143 -19.800 8.640 21.996 hybrid contribution -0.880 0.686 -0.784 1.364 sum -5.023 -19.113 7.856 21.267 Atomic orbital electron populations 1.70298 1.04786 1.24515 1.54877 1.24650 0.95298 0.97747 1.02344 0.86382 0.79510 0.84467 0.77348 1.21863 1.22191 1.20695 1.19428 0.97873 0.86379 1.33830 0.90840 1.44087 1.19525 1.02975 1.65622 1.20721 0.83239 0.98972 0.91255 1.21409 0.98514 0.92118 1.04098 1.20830 0.95064 1.00668 0.98240 1.20587 0.95810 0.87321 0.90958 0.87528 1.46220 1.28799 1.34177 1.27627 1.17918 0.84238 0.83901 0.81232 1.90944 1.25383 1.49440 1.71164 1.21073 0.96515 0.98591 0.98342 1.21863 0.94760 0.93000 0.97838 1.22252 1.01456 0.98046 0.96113 1.22977 0.88467 0.97093 0.95659 1.67344 1.19061 1.05312 1.25415 1.21943 0.96600 0.93822 0.91714 1.19789 0.86702 0.79461 0.85827 1.93059 1.75567 1.96293 1.51359 1.93083 1.94251 1.36079 1.92498 1.22287 0.98431 0.99336 0.97790 1.21145 0.93357 0.84947 0.97737 0.94095 0.90103 0.98081 0.87664 0.94481 0.94089 0.94049 0.77757 0.83647 0.83427 0.81439 0.86202 0.92497 0.92956 0.96475 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 8.06 55.49 0.45 -24.35 16 2 C 0.00 -0.11 4.85 -17.43 -0.08 -0.20 16 3 Si 0.89 22.08 29.63 -169.99 -5.04 17.04 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.79 9.59 -15.06 -0.14 -6.94 16 8 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 9 N -0.60 -14.88 2.29 -171.88 -0.39 -15.27 16 10 C 0.18 4.35 4.96 -4.09 -0.02 4.33 16 11 C -0.12 -2.64 4.77 -28.58 -0.14 -2.78 16 12 C -0.11 -1.96 4.69 -29.79 -0.14 -2.10 16 13 C 0.16 2.89 2.06 -69.22 -0.14 2.74 16 14 H 0.11 2.53 6.92 -51.93 -0.36 2.17 16 15 N -0.72 -10.67 4.88 -56.01 -0.27 -10.94 16 16 C 0.54 8.93 7.36 -12.33 -0.09 8.84 16 17 O -0.49 -10.20 11.06 5.32 0.06 -10.14 16 18 C -0.14 -1.81 5.85 -104.82 -0.61 -2.43 16 19 C -0.05 -0.42 9.64 -38.87 -0.37 -0.80 16 20 C -0.16 -1.04 10.10 -39.49 -0.40 -1.44 16 21 C 0.12 0.88 11.17 -17.47 -0.20 0.68 16 22 N -0.46 -5.10 10.24 -9.15 -0.09 -5.19 16 23 C 0.10 1.31 6.31 -82.17 -0.52 0.79 16 24 C 0.34 4.80 5.02 36.00 0.18 4.98 16 25 F -0.18 -3.04 14.98 2.25 0.03 -3.01 16 26 F -0.18 -3.10 15.09 2.25 0.03 -3.06 16 27 C -0.14 -2.54 5.39 -27.12 -0.15 -2.68 16 28 C 0.15 3.34 6.28 -2.76 -0.02 3.32 16 29 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.08 2.14 5.97 -51.93 -0.31 1.83 16 31 H 0.00 0.02 8.06 -51.93 -0.42 -0.40 16 32 H 0.11 2.73 6.29 -51.93 -0.33 2.41 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.04 0.67 7.36 -51.93 -0.38 0.29 16 36 H 0.39 4.31 6.74 -40.82 -0.28 4.03 16 37 H 0.15 0.89 6.56 -52.49 -0.34 0.55 16 38 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 1.26 8.11 -51.93 -0.42 0.84 16 41 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 42 H 0.05 0.89 7.32 -51.93 -0.38 0.51 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 1.21 7.80 -51.93 -0.40 0.81 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -32.72 351.12 -8.46 -41.18 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.68 Total: 2.13 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.84 Total: 6.32 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.31 Total: -55.75 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.06 Total: -10.14 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.07 Total: -6.07 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.04 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.72 -8.46 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052550954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.273 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds