Wall clock time and date at job start Tue Mar 31 2020 23:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00206 * 2 1 4 4 H 1.48498 * 109.46867 * 274.99877 * 3 2 1 5 5 H 1.48498 * 109.46654 * 34.99717 * 3 2 1 6 6 H 1.48500 * 109.47106 * 154.99819 * 3 2 1 7 7 C 1.38812 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00435 * 205.92959 * 7 2 1 9 9 N 1.36944 * 119.99923 * 26.21041 * 7 2 1 10 10 C 1.44572 * 118.64453 * 5.07396 * 9 7 2 11 11 C 1.54861 * 109.60133 * 270.71165 * 10 9 7 12 12 C 1.47098 * 110.32096 * 288.72937 * 11 10 9 13 13 C 1.52568 * 114.32281 * 62.80193 * 12 11 10 14 14 H 1.08998 * 109.48720 * 34.98204 * 13 12 11 15 15 N 1.46500 * 109.48742 * 155.02334 * 13 12 11 16 16 C 1.34780 * 119.99955 * 205.00504 * 15 13 12 17 17 O 1.21548 * 119.99787 * 359.97438 * 16 15 13 18 18 C 1.47842 * 119.99928 * 180.02562 * 16 15 13 19 19 C 1.40021 * 120.55861 * 354.41223 * 18 16 15 20 20 C 1.38357 * 118.28772 * 179.97438 * 19 18 16 21 21 C 1.38356 * 119.30140 * 0.02562 * 20 19 18 22 22 N 1.31924 * 121.08259 * 359.97438 * 21 20 19 23 23 C 1.31702 * 121.87511 * 359.77137 * 22 21 20 24 24 C 1.50695 * 119.71284 * 180.24747 * 23 22 21 25 25 F 1.39897 * 109.47194 * 122.63968 * 24 23 22 26 26 F 1.39903 * 109.47020 * 242.64097 * 24 23 22 27 27 C 1.50880 * 109.35995 * 274.98669 * 13 12 11 28 28 C 1.47605 * 118.64271 * 184.81408 * 9 7 2 29 29 H 0.97003 * 120.00308 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.44858 * 30.74861 * 10 9 7 31 31 H 1.08996 * 109.44864 * 150.66833 * 10 9 7 32 32 H 1.08999 * 109.33136 * 48.99327 * 11 10 9 33 33 H 1.09004 * 109.32941 * 168.64848 * 11 10 9 34 34 H 1.08999 * 108.51029 * 184.05868 * 12 11 10 35 35 H 1.08998 * 108.51235 * 301.55123 * 12 11 10 36 36 H 0.96996 * 120.00254 * 24.99910 * 15 13 12 37 37 H 1.08000 * 120.85800 * 359.96003 * 19 18 16 38 38 H 1.08000 * 120.34867 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.45700 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47358 * 2.63686 * 24 23 22 41 41 H 1.09001 * 109.36289 * 212.07630 * 27 13 12 42 42 H 1.08997 * 109.36572 * 331.69828 * 27 13 12 43 43 H 1.09006 * 108.94123 * 258.57695 * 28 9 7 44 44 H 1.08999 * 108.94522 * 17.19759 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0086 -1.2492 0.4095 9 7 1.4310 -2.3274 -0.5228 10 6 0.1427 -2.2078 -1.1677 11 6 -0.9822 -2.3995 -0.1207 12 6 -1.0498 -3.8060 0.3047 13 6 0.2079 -4.3119 1.0047 14 1 0.6422 -3.5075 1.5983 15 7 -0.1382 -5.4339 1.8808 16 6 0.6360 -5.7207 2.9462 17 8 1.6215 -5.0487 3.1798 18 6 0.2870 -6.8533 3.8300 19 6 -0.9052 -7.5627 3.6410 20 6 -1.1847 -8.6147 4.4951 21 6 -0.2862 -8.9287 5.4992 22 7 0.8298 -8.2424 5.6537 23 6 1.1426 -7.2363 4.8634 24 6 2.4331 -6.4891 5.0805 25 9 3.2005 -6.5344 3.9117 26 9 2.1523 -5.1570 5.4028 27 6 1.2060 -4.7703 -0.0298 28 6 2.1506 -3.6112 -0.4102 29 1 -0.4851 0.8400 -0.0004 30 1 0.0533 -1.2198 -1.6196 31 1 0.0520 -2.9700 -1.9415 32 1 -0.7798 -1.7698 0.7457 33 1 -1.9372 -2.1120 -0.5605 34 1 -1.8943 -3.9218 0.9840 35 1 -1.2295 -4.4251 -0.5741 36 1 -0.9245 -5.9703 1.6943 37 1 -1.5892 -7.2955 2.8490 38 1 -2.0950 -9.1843 4.3796 39 1 -0.5020 -9.7491 6.1676 40 1 2.9876 -6.9513 5.8973 41 1 1.7916 -5.5962 0.3741 42 1 0.6749 -5.1074 -0.9199 43 1 2.6252 -3.8357 -1.3655 44 1 2.9228 -3.5183 0.3535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052550954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:32 Heat of formation + Delta-G solvation = -74.920086 kcal Electronic energy + Delta-G solvation = -30883.539456 eV Core-core repulsion = 26472.293376 eV Total energy + Delta-G solvation = -4411.246080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.85259 -47.86909 -41.80935 -40.53258 -39.09394 -36.44272 -34.53381 -33.58444 -33.49789 -33.10852 -31.35493 -28.26603 -27.65883 -26.03963 -25.36965 -24.77968 -23.40948 -21.94783 -21.53790 -20.89674 -19.20102 -18.61436 -18.49963 -18.26899 -18.14430 -17.40787 -17.13112 -16.62971 -16.25397 -16.09757 -15.87241 -15.70583 -15.44628 -14.87199 -14.73598 -14.63673 -14.48181 -14.21475 -14.14912 -14.05538 -13.78292 -13.70614 -13.31080 -13.22989 -13.02338 -12.69780 -12.39339 -12.31753 -12.11992 -11.83425 -11.68849 -11.50180 -11.39967 -11.13797 -11.12628 -11.04923 -10.66832 -10.42844 -10.27006 -10.04159 -8.76135 -7.75101 -5.07171 -0.59427 -0.05207 1.45952 1.48694 1.56271 1.79543 2.01533 2.35822 2.55225 2.60574 3.21053 3.26648 3.32524 3.52895 3.69502 3.71262 3.83745 3.88820 4.04467 4.11232 4.16786 4.25559 4.35243 4.38798 4.49850 4.57077 4.68823 4.81414 4.88575 4.93710 4.95592 5.10804 5.21201 5.24361 5.33254 5.42034 5.43786 5.52130 5.60769 5.67113 5.89848 6.34846 6.39496 6.49027 6.60322 7.21311 7.28997 8.01739 8.32466 9.20558 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003449 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.758865 B = 8116.284506 C = 8915.243582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.044 4.044 3 Si 0.947 3.053 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.283 1.283 7 C -0.265 4.265 8 H 0.057 0.943 9 N -0.610 5.610 10 C 0.186 3.814 11 C -0.108 4.108 12 C -0.104 4.104 13 C 0.168 3.832 14 H 0.046 0.954 15 N -0.702 5.702 16 C 0.538 3.462 17 O -0.549 6.549 18 C -0.167 4.167 19 C -0.044 4.044 20 C -0.137 4.137 21 C 0.118 3.882 22 N -0.479 5.479 23 C 0.080 3.920 24 C 0.323 3.677 25 F -0.203 7.203 26 F -0.204 7.204 27 C -0.125 4.125 28 C 0.152 3.848 29 H 0.245 0.755 30 H 0.047 0.953 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.175 0.825 38 H 0.197 0.803 39 H 0.210 0.790 40 H 0.151 0.849 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 -23.761 7.742 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.239 4.239 3 Si 0.777 3.223 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.395 4.395 8 H 0.075 0.925 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.149 4.149 12 C -0.142 4.142 13 C 0.064 3.936 14 H 0.064 0.936 15 N -0.354 5.354 16 C 0.324 3.676 17 O -0.427 6.427 18 C -0.172 4.172 19 C -0.070 4.070 20 C -0.156 4.156 21 C -0.039 4.039 22 N -0.188 5.188 23 C -0.060 4.060 24 C 0.268 3.732 25 F -0.184 7.184 26 F -0.185 7.185 27 C -0.165 4.165 28 C 0.027 3.973 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.192 0.808 38 H 0.214 0.786 39 H 0.226 0.774 40 H 0.168 0.832 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.995 -23.355 8.527 25.829 hybrid contribution -0.038 1.673 -0.671 1.803 sum -7.033 -21.683 7.856 24.110 Atomic orbital electron populations 1.70476 1.05267 1.24499 1.55011 1.25210 0.96158 0.99854 1.02688 0.85542 0.78264 0.81331 0.77165 1.21407 1.22342 1.20875 1.19507 0.97526 0.88058 1.34405 0.92509 1.44194 1.20168 1.03347 1.65627 1.20643 0.83315 0.97902 0.92101 1.21114 0.98010 0.94084 1.01668 1.20667 0.95253 0.98376 0.99930 1.20121 0.96056 0.86998 0.90442 0.93594 1.45883 1.29464 1.33290 1.26803 1.18551 0.83390 0.84260 0.81426 1.90922 1.27796 1.51547 1.72480 1.20836 0.98980 0.98791 0.98625 1.22251 0.93185 0.92712 0.98830 1.22789 1.02315 0.96556 0.93900 1.23834 0.87097 0.96852 0.96114 1.67362 1.20989 1.05170 1.25274 1.21667 0.96262 0.95059 0.92974 1.20339 0.88362 0.78588 0.85887 1.92996 1.76320 1.96306 1.52764 1.93013 1.94548 1.38320 1.92635 1.22142 0.97892 0.97646 0.98788 1.21215 0.93531 0.85131 0.97465 0.94549 0.93518 0.95534 0.92302 0.93648 0.91808 0.90742 0.75041 0.80778 0.78551 0.77359 0.83170 0.92203 0.90154 0.95148 0.95666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.68 8.06 21.65 0.17 -51.50 16 2 C -0.04 -2.50 4.85 84.86 0.41 -2.09 16 3 Si 0.95 46.92 29.63 68.60 2.03 48.96 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.27 -15.34 9.59 84.03 0.81 -14.53 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.36 16 9 N -0.61 -31.22 2.29 -697.70 -1.60 -32.82 16 10 C 0.19 8.81 4.96 87.37 0.43 9.25 16 11 C -0.11 -4.71 4.77 29.39 0.14 -4.57 16 12 C -0.10 -3.50 4.69 28.62 0.13 -3.36 16 13 C 0.17 6.19 2.06 44.16 0.09 6.28 16 14 H 0.05 2.30 6.92 -2.39 -0.02 2.29 16 15 N -0.70 -20.03 4.88 -449.40 -2.20 -22.22 16 16 C 0.54 17.93 7.36 86.78 0.64 18.57 16 17 O -0.55 -24.18 11.06 -3.87 -0.04 -24.22 16 18 C -0.17 -4.14 5.85 -20.00 -0.12 -4.26 16 19 C -0.04 -0.60 9.64 22.73 0.22 -0.38 16 20 C -0.14 -1.02 10.10 22.33 0.23 -0.79 16 21 C 0.12 1.26 11.17 84.71 0.95 2.20 16 22 N -0.48 -9.53 10.24 -182.85 -1.87 -11.40 16 23 C 0.08 2.07 6.31 42.88 0.27 2.34 16 24 C 0.32 9.70 5.02 71.23 0.36 10.05 16 25 F -0.20 -7.28 14.98 44.97 0.67 -6.61 16 26 F -0.20 -7.67 15.09 44.97 0.68 -6.99 16 27 C -0.12 -4.48 5.39 30.34 0.16 -4.32 16 28 C 0.15 6.75 6.28 86.61 0.54 7.29 16 29 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.05 2.52 5.97 -2.38 -0.01 2.51 16 31 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 32 H 0.06 3.15 6.29 -2.39 -0.02 3.13 16 33 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.07 2.07 7.36 -2.39 -0.02 2.06 16 36 H 0.41 7.73 6.74 -92.71 -0.62 7.10 16 37 H 0.17 1.22 6.56 -2.91 -0.02 1.20 16 38 H 0.20 -0.38 8.06 -2.91 -0.02 -0.40 16 39 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 40 H 0.15 3.32 8.11 -2.39 -0.02 3.30 16 41 H 0.06 2.12 7.85 -2.39 -0.02 2.10 16 42 H 0.08 2.46 7.32 -2.39 -0.02 2.44 16 43 H 0.03 1.26 8.14 -2.38 -0.02 1.25 16 44 H 0.02 1.22 7.80 -2.39 -0.02 1.20 16 Total: -1.00 -79.58 351.12 3.54 -76.04 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.42 Total: 9.09 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 5.26 Total: 21.69 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -5.49 Total: -117.95 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.22 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 1.35 Total: -13.60 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.58 3.54 -76.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052550954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.120 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds