Wall clock time and date at job start Tue Mar 31 2020 23:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48502 * 109.47429 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46943 * 299.99696 * 3 2 1 6 6 H 1.48501 * 109.47163 * 59.99622 * 3 2 1 7 7 C 1.38812 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00478 * 169.01046 * 7 2 1 9 9 N 1.36946 * 119.99755 * 349.01439 * 7 2 1 10 10 C 1.50164 * 120.53328 * 331.89415 * 9 7 2 11 11 C 1.46234 * 107.59036 * 109.60591 * 10 9 7 12 12 C 1.52526 * 114.27706 * 58.37087 * 11 10 9 13 13 C 1.50125 * 105.41820 * 270.59501 * 12 11 10 14 14 H 1.09005 * 109.20383 * 337.38758 * 13 12 11 15 15 N 1.46497 * 109.21254 * 218.02902 * 13 12 11 16 16 C 1.34781 * 120.00326 * 154.99902 * 15 13 12 17 17 O 1.21555 * 119.99516 * 359.97438 * 16 15 13 18 18 C 1.47838 * 120.00133 * 180.02562 * 16 15 13 19 19 C 1.40024 * 120.55618 * 354.35482 * 18 16 15 20 20 C 1.38361 * 118.28597 * 179.97438 * 19 18 16 21 21 C 1.38354 * 119.30206 * 0.02562 * 20 19 18 22 22 N 1.31929 * 121.07718 * 0.02562 * 21 20 19 23 23 C 1.31685 * 121.88343 * 359.68029 * 22 21 20 24 24 C 1.50698 * 119.71945 * 180.29467 * 23 22 21 25 25 F 1.39905 * 109.47557 * 123.38489 * 24 23 22 26 26 F 1.39896 * 109.47003 * 243.38906 * 24 23 22 27 27 C 1.54837 * 110.81902 * 97.68080 * 13 12 11 28 28 C 1.43403 * 120.51854 * 151.78454 * 9 7 2 29 29 H 0.97004 * 120.00005 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.85166 * 350.06599 * 10 9 7 31 31 H 1.09001 * 109.84562 * 229.14434 * 10 9 7 32 32 H 1.08996 * 108.52686 * 179.61220 * 11 10 9 33 33 H 1.08999 * 108.52506 * 297.28863 * 11 10 9 34 34 H 1.09005 * 110.25133 * 29.56975 * 12 11 10 35 35 H 1.09004 * 110.25040 * 151.47684 * 12 11 10 36 36 H 0.97001 * 119.99584 * 334.99614 * 15 13 12 37 37 H 1.07996 * 120.85788 * 359.97438 * 19 18 16 38 38 H 1.07995 * 120.34766 * 180.02562 * 20 19 18 39 39 H 1.08005 * 119.45993 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47200 * 3.38840 * 24 23 22 41 41 H 1.08997 * 109.35835 * 81.34212 * 27 13 12 42 42 H 1.09001 * 109.36229 * 201.06534 * 27 13 12 43 43 H 1.09006 * 108.12018 * 149.82586 * 28 9 7 44 44 H 1.08997 * 107.96729 * 33.17604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0754 -1.2108 -0.1777 9 7 1.3443 -2.3771 0.2271 10 6 0.0949 -2.3976 1.0598 11 6 -1.0293 -2.6645 0.1635 12 6 -0.9166 -3.9736 -0.6112 13 6 -0.1860 -3.6271 -1.8761 14 1 -0.3018 -2.5620 -2.0768 15 7 -0.7570 -4.3919 -2.9875 16 6 -0.6520 -3.9283 -4.2487 17 8 -0.0840 -2.8755 -4.4639 18 6 -1.2288 -4.6998 -5.3702 19 6 -1.7821 -5.9675 -5.1520 20 6 -2.3094 -6.6480 -6.2352 21 6 -2.2730 -6.0602 -7.4871 22 7 -1.7442 -4.8644 -7.6629 23 6 -1.2352 -4.1751 -6.6630 24 6 -0.6493 -2.8104 -6.9181 25 9 -1.2904 -1.8683 -6.1064 26 9 0.7180 -2.8271 -6.6225 27 6 1.3210 -3.9598 -1.7499 28 6 1.8279 -3.6072 -0.3293 29 1 -0.4850 0.8401 -0.0004 30 1 -0.0413 -1.4320 1.5467 31 1 0.1639 -3.1843 1.8112 32 1 -1.9449 -2.6896 0.7544 33 1 -1.1030 -1.8462 -0.5527 34 1 -0.3488 -4.7049 -0.0358 35 1 -1.9086 -4.3629 -0.8404 36 1 -1.2106 -5.2319 -2.8157 37 1 -1.7968 -6.4028 -4.1638 38 1 -2.7447 -7.6277 -6.1047 39 1 -2.6836 -6.5893 -8.3345 40 1 -0.7913 -2.5440 -7.9655 41 1 1.4729 -5.0233 -1.9341 42 1 1.8813 -3.3822 -2.4851 43 1 1.5456 -4.4175 0.3430 44 1 2.9163 -3.5576 -0.3595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052550955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:37 Heat of formation + Delta-G solvation = -59.125402 kcal Electronic energy + Delta-G solvation = -30929.298445 eV Core-core repulsion = 26518.737274 eV Total energy + Delta-G solvation = -4410.561171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.61197 -46.59316 -40.85105 -39.23585 -37.55787 -34.71394 -33.39916 -32.44638 -31.95057 -31.50680 -29.78988 -27.03302 -26.08438 -24.89069 -23.95602 -23.11318 -22.32869 -20.72052 -19.95947 -19.13064 -18.16617 -17.59893 -17.19567 -16.91096 -16.68257 -16.13633 -15.47177 -15.27852 -15.09965 -14.76705 -14.62082 -14.21901 -13.77471 -13.64417 -13.44260 -13.30321 -13.20810 -13.12890 -12.86988 -12.43544 -12.21936 -12.17307 -11.81862 -11.43030 -11.27630 -11.13762 -10.77481 -10.59710 -10.37884 -10.29151 -10.21559 -10.13373 -10.00094 -9.79248 -9.60291 -9.46429 -9.41869 -9.32354 -8.55662 -8.34508 -6.57673 -5.70601 -3.17527 0.25087 0.65386 2.82943 3.25188 3.30694 3.44613 3.53053 3.54388 3.56553 4.09014 4.27254 4.33723 4.43939 4.58013 4.64789 4.85922 5.00652 5.18215 5.20630 5.39156 5.47517 5.49061 5.58005 5.58986 5.75200 5.89049 6.02259 6.04431 6.29458 6.32358 6.43317 6.50654 6.73741 6.89163 6.93196 6.97463 7.06533 7.14648 7.27116 7.32892 7.66279 7.78043 7.83274 8.04856 8.46554 8.54070 9.28257 9.92774 10.46461 11.36341 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.003746 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.047446 B = 7471.888735 C = 8568.402336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.167 3.833 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.157 3.843 14 H 0.106 0.894 15 N -0.719 5.719 16 C 0.541 3.459 17 O -0.493 6.493 18 C -0.138 4.138 19 C -0.049 4.049 20 C -0.159 4.159 21 C 0.114 3.886 22 N -0.463 5.463 23 C 0.099 3.901 24 C 0.337 3.663 25 F -0.180 7.180 26 F -0.180 7.180 27 C -0.150 4.150 28 C 0.163 3.837 29 H 0.252 0.748 30 H 0.092 0.908 31 H 0.003 0.997 32 H 0.029 0.971 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.387 0.613 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.027 0.973 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -16.122 -11.384 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.043 3.957 11 C -0.168 4.168 12 C -0.159 4.159 13 C 0.055 3.945 14 H 0.123 0.877 15 N -0.370 5.370 16 C 0.324 3.676 17 O -0.368 6.368 18 C -0.144 4.144 19 C -0.075 4.075 20 C -0.179 4.179 21 C -0.043 4.043 22 N -0.171 5.171 23 C -0.041 4.041 24 C 0.282 3.718 25 F -0.161 7.161 26 F -0.161 7.161 27 C -0.193 4.193 28 C 0.033 3.967 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.021 0.979 32 H 0.047 0.953 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.221 0.779 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.137 0.863 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.278 -14.763 -12.292 20.543 hybrid contribution 0.035 -0.138 0.763 0.776 sum -7.243 -14.901 -11.529 20.185 Atomic orbital electron populations 1.69875 1.05066 1.25019 1.54866 1.25033 0.95399 0.98178 1.00533 0.86208 0.79272 0.84076 0.77120 1.20419 1.21676 1.21781 1.19239 0.91044 0.84078 1.43463 0.91652 1.44205 1.28981 1.03316 1.54501 1.20138 0.84749 0.99718 0.91071 1.20965 0.98200 0.96417 1.01245 1.21373 0.98220 0.99959 0.96379 1.21343 0.92522 0.97527 0.83106 0.87657 1.46395 1.58415 1.25543 1.06659 1.17954 0.81036 0.85715 0.82893 1.90958 1.40897 1.21434 1.83477 1.21117 1.01303 0.96388 0.95580 1.21854 0.92890 0.92547 1.00248 1.22242 1.00384 1.01753 0.93531 1.22966 0.93865 0.90347 0.97142 1.67330 1.08613 1.07890 1.33308 1.21946 0.96322 0.96913 0.88942 1.19788 0.74993 0.82937 0.94086 1.93083 1.81321 1.65385 1.76283 1.93067 1.31434 1.96548 1.95011 1.23303 0.95305 0.98513 1.02151 1.20358 0.96578 0.89180 0.90584 0.93791 0.89017 0.97865 0.95263 0.87652 0.91895 0.92987 0.77881 0.83681 0.83477 0.81481 0.86253 0.93819 0.92317 0.95463 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 9.11 55.49 0.51 -24.91 16 2 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 3 Si 0.90 22.32 29.57 -169.99 -5.03 17.29 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -6.85 9.62 -15.06 -0.14 -6.99 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 N -0.59 -14.50 2.60 -175.10 -0.45 -14.95 16 10 C 0.17 3.84 5.23 -5.21 -0.03 3.82 16 11 C -0.13 -2.73 5.00 -30.19 -0.15 -2.88 16 12 C -0.12 -2.11 5.33 -28.40 -0.15 -2.26 16 13 C 0.16 3.01 2.22 -68.39 -0.15 2.86 16 14 H 0.11 2.62 6.26 -51.93 -0.33 2.30 16 15 N -0.72 -11.13 4.93 -55.20 -0.27 -11.40 16 16 C 0.54 9.37 7.49 -12.33 -0.09 9.27 16 17 O -0.49 -10.82 11.07 5.32 0.06 -10.76 16 18 C -0.14 -1.89 5.85 -104.82 -0.61 -2.50 16 19 C -0.05 -0.45 9.64 -38.87 -0.37 -0.82 16 20 C -0.16 -1.10 10.10 -39.49 -0.40 -1.50 16 21 C 0.11 0.92 11.17 -17.47 -0.20 0.72 16 22 N -0.46 -5.35 10.24 -9.15 -0.09 -5.45 16 23 C 0.10 1.37 6.31 -82.18 -0.52 0.85 16 24 C 0.34 5.11 5.02 36.00 0.18 5.29 16 25 F -0.18 -3.30 14.91 2.25 0.03 -3.27 16 26 F -0.18 -3.23 15.16 2.25 0.03 -3.20 16 27 C -0.15 -2.96 5.98 -24.76 -0.15 -3.11 16 28 C 0.16 3.44 5.17 -4.68 -0.02 3.41 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 31 H 0.00 0.07 8.13 -51.93 -0.42 -0.35 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.11 2.65 5.14 -51.93 -0.27 2.39 16 34 H 0.06 1.04 6.29 -51.93 -0.33 0.71 16 35 H 0.05 0.77 7.86 -51.93 -0.41 0.37 16 36 H 0.39 4.43 6.62 -40.82 -0.27 4.16 16 37 H 0.15 0.93 6.56 -52.49 -0.34 0.59 16 38 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.12 1.36 8.11 -51.93 -0.42 0.94 16 41 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.03 0.52 6.89 -51.93 -0.36 0.16 16 44 H 0.03 0.71 7.99 -51.93 -0.41 0.29 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -33.46 350.77 -8.36 -41.82 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.54 Total: 3.28 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -2.90 Total: 6.25 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.31 Total: -56.71 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.06 Total: -10.76 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.07 Total: -6.47 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.46 -8.36 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052550955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.302 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds