Wall clock time and date at job start Tue Mar 31 2020 23:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99657 * 2 1 4 4 H 1.48504 * 109.47049 * 274.98706 * 3 2 1 5 5 H 1.48492 * 109.47227 * 34.98877 * 3 2 1 6 6 H 1.48500 * 109.46905 * 154.98951 * 3 2 1 7 7 C 1.38811 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99816 * 185.08361 * 7 2 1 9 9 N 1.36933 * 120.00216 * 5.09233 * 7 2 1 10 10 C 1.47774 * 134.40796 * 173.51320 * 9 7 2 11 11 C 1.52940 * 85.80969 * 156.09230 * 10 9 7 12 12 C 1.47776 * 134.40861 * 353.52936 * 9 7 2 13 13 C 1.54266 * 115.18135 * 266.70346 * 11 10 9 14 14 C 1.55478 * 100.66699 * 194.61959 * 13 11 10 15 15 H 1.09001 * 110.82306 * 274.55708 * 14 13 11 16 16 N 1.46494 * 110.82757 * 151.18891 * 14 13 11 17 17 C 1.34785 * 119.99857 * 157.71636 * 16 14 13 18 18 O 1.21281 * 120.00035 * 359.97438 * 17 16 14 19 19 C 1.50696 * 119.99696 * 180.02562 * 17 16 14 20 20 H 1.08991 * 109.87440 * 304.29682 * 19 17 16 21 21 C 1.54106 * 109.88103 * 65.30733 * 19 17 16 22 22 C 1.54806 * 104.18659 * 121.59863 * 21 19 17 23 23 C 1.54991 * 102.09821 * 20.88388 * 22 21 19 24 24 H 1.09008 * 110.62084 * 81.47034 * 23 22 21 25 25 C 1.50692 * 110.62457 * 204.31803 * 23 22 21 26 26 N 1.34778 * 119.99768 * 294.99851 * 25 23 22 27 27 O 1.21280 * 120.00651 * 114.99273 * 25 23 22 28 28 O 1.43744 * 109.99992 * 183.20801 * 19 17 16 29 29 C 1.54471 * 102.54833 * 32.87026 * 14 13 11 30 30 O 1.42543 * 116.18982 * 141.02534 * 11 10 9 31 31 H 0.97003 * 120.00389 * 0.02562 * 1 2 3 32 32 H 1.09001 * 113.81804 * 41.87228 * 10 9 7 33 33 H 1.09002 * 113.81802 * 270.31550 * 10 9 7 34 34 H 1.08995 * 113.81511 * 89.68469 * 12 9 7 35 35 H 1.09000 * 113.81912 * 318.12992 * 12 9 7 36 36 H 1.09000 * 111.33366 * 76.72654 * 13 11 10 37 37 H 1.09000 * 111.08416 * 312.41047 * 13 11 10 38 38 H 0.97003 * 120.00426 * 337.71914 * 16 14 13 39 39 H 1.08995 * 110.48672 * 240.27868 * 21 19 17 40 40 H 1.09002 * 110.48320 * 2.79442 * 21 19 17 41 41 H 1.09001 * 110.90358 * 139.07842 * 22 21 19 42 42 H 1.08995 * 110.91245 * 262.68112 * 22 21 19 43 43 H 0.97000 * 119.99802 * 359.97438 * 26 25 23 44 44 H 0.97001 * 120.00336 * 179.97438 * 26 25 23 45 45 H 1.09008 * 109.82754 * 98.24135 * 29 14 13 46 46 H 1.09001 * 109.83399 * 219.13076 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0823 9 7 1.3296 -2.3857 -0.1063 10 6 1.7314 -3.7995 -0.2587 11 6 0.3726 -4.1353 0.3577 12 6 -0.1001 -2.7592 -0.1140 13 6 0.3766 -4.3326 1.8877 14 6 -1.0051 -5.0151 2.0935 15 1 -1.7957 -4.2702 2.1837 16 7 -0.9830 -5.8928 3.2662 17 6 -2.1349 -6.2198 3.8850 18 8 -3.1896 -5.7871 3.4712 19 6 -2.1121 -7.1221 5.0918 20 1 -1.6103 -8.0578 4.8454 21 6 -1.3789 -6.4246 6.2539 22 6 -2.4276 -6.3799 7.3918 23 6 -3.4117 -7.5008 6.9708 24 1 -3.0308 -8.4779 7.2684 25 6 -4.7753 -7.2610 7.5656 26 7 -4.9446 -7.3043 8.9021 27 8 -5.7205 -7.0290 6.8420 28 8 -3.4543 -7.3885 5.5319 29 6 -1.1702 -5.8366 0.7958 30 8 -0.3093 -5.2579 -0.1961 31 1 -0.4851 0.8400 -0.0004 32 1 2.5797 -4.0856 0.3633 33 1 1.8352 -4.1183 -1.2959 34 1 -0.5483 -2.7645 -1.1076 35 1 -0.6991 -2.2232 0.6222 36 1 0.4253 -3.3774 2.4106 37 1 1.1898 -4.9896 2.1962 38 1 -0.1394 -6.2385 3.5975 39 1 -0.5088 -7.0055 6.5596 40 1 -1.0815 -5.4160 5.9667 41 1 -1.9678 -6.6071 8.3536 42 1 -2.9292 -5.4127 7.4209 43 1 -4.1887 -7.4901 9.4809 44 1 -5.8222 -7.1496 9.2851 45 1 -0.8834 -6.8729 0.9752 46 1 -2.2061 -5.7926 0.4595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053924556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:44 Heat of formation + Delta-G solvation = -93.042210 kcal Electronic energy + Delta-G solvation = -29808.355555 eV Core-core repulsion = 25507.411156 eV Total energy + Delta-G solvation = -4300.944399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00112 -40.11970 -39.30391 -38.10125 -36.22799 -34.59049 -34.22426 -32.60518 -32.09951 -31.10452 -29.58798 -28.05605 -25.81204 -25.21462 -24.91903 -22.75233 -22.03328 -21.49800 -20.99409 -20.54828 -18.76382 -18.38226 -17.83330 -16.96730 -16.86347 -16.77738 -16.47596 -15.83267 -15.28137 -15.12817 -14.95978 -14.91660 -14.58162 -14.36884 -14.12766 -13.94181 -13.73075 -13.40843 -12.87783 -12.64924 -12.60040 -12.26562 -12.16979 -11.92334 -11.66555 -11.53921 -11.39538 -11.11591 -10.94118 -10.82812 -10.76866 -10.68284 -10.32461 -10.14996 -10.13142 -10.00965 -9.65786 -9.55888 -9.11541 -8.81339 -8.74287 -6.91346 -5.80421 -3.12904 2.18323 2.38790 2.50153 2.99292 3.37937 3.42684 3.45417 3.62292 3.88355 4.18377 4.24076 4.28454 4.40213 4.47346 4.50894 4.60689 4.67953 4.88199 4.99862 5.11647 5.13341 5.19983 5.22241 5.33240 5.33670 5.40197 5.46684 5.54079 5.91361 5.98912 6.10914 6.11609 6.27947 6.34647 6.36464 6.45768 6.59374 6.69313 6.84685 7.03197 7.20832 7.35575 7.50020 7.70438 7.84305 7.93733 8.11550 9.01032 9.67182 10.55860 11.37148 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.002302 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.282383 B =12158.892477 C =12940.148447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.055 3.945 12 C 0.159 3.841 13 C -0.120 4.120 14 C 0.113 3.887 15 H 0.108 0.892 16 N -0.716 5.716 17 C 0.510 3.490 18 O -0.507 6.507 19 C 0.059 3.941 20 H 0.101 0.899 21 C -0.147 4.147 22 C -0.142 4.142 23 C 0.055 3.945 24 H 0.102 0.898 25 C 0.521 3.479 26 N -0.853 5.853 27 O -0.511 6.511 28 O -0.315 6.315 29 C 0.045 3.955 30 O -0.368 6.368 31 H 0.255 0.745 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.401 0.599 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.401 0.599 44 H 0.406 0.594 45 H 0.064 0.936 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -19.247 20.713 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.100 0.900 9 N -0.333 5.333 10 C 0.003 3.997 11 C 0.014 3.986 12 C 0.034 3.966 13 C -0.158 4.158 14 C 0.008 3.992 15 H 0.126 0.874 16 N -0.370 5.370 17 C 0.294 3.706 18 O -0.380 6.380 19 C -0.003 4.003 20 H 0.118 0.882 21 C -0.185 4.185 22 C -0.180 4.180 23 C -0.007 4.007 24 H 0.119 0.881 25 C 0.304 3.696 26 N -0.420 5.420 27 O -0.384 6.384 28 O -0.232 6.232 29 C -0.033 4.033 30 O -0.286 6.286 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.229 0.771 44 H 0.238 0.762 45 H 0.083 0.917 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.667 -18.537 19.422 26.980 hybrid contribution 1.024 0.752 0.772 1.487 sum -1.643 -17.784 20.194 26.959 Atomic orbital electron populations 1.69838 1.05060 1.25553 1.55786 1.24847 0.95684 0.97596 1.02146 0.86122 0.78666 0.83520 0.77584 1.21554 1.21695 1.20538 1.18956 0.90691 0.81641 1.43870 0.90034 1.45717 1.02242 1.00534 1.84851 1.22549 0.93062 0.86191 0.97875 1.24256 0.95454 0.87501 0.91365 1.22507 0.88180 0.87041 0.98900 1.23004 0.94481 1.01974 0.96329 1.22666 1.00117 0.92101 0.84333 0.87424 1.45838 1.08867 1.51265 1.31063 1.20374 0.84307 0.81674 0.84274 1.90796 1.30205 1.52157 1.64831 1.22703 0.85206 0.98419 0.93974 0.88156 1.22970 0.98751 1.03163 0.93596 1.23125 0.95885 0.99568 0.99456 1.23042 0.93618 1.00223 0.83791 0.88077 1.20138 0.90139 0.76701 0.82652 1.43714 1.15168 1.76180 1.06915 1.90842 1.42007 1.45663 1.59883 1.89172 1.24848 1.91851 1.17349 1.23455 0.95296 0.96592 0.87958 1.88315 1.58649 1.45421 1.36168 0.93481 0.93338 0.93872 0.94485 0.91006 0.88268 0.90492 0.76480 0.88795 0.89020 0.88736 0.89434 0.77092 0.76220 0.91740 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.52 55.49 0.64 -26.59 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -6.21 10.69 -15.06 -0.16 -6.37 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.46 3.69 -183.16 -0.67 -16.13 16 10 C 0.13 2.69 8.50 -3.38 -0.03 2.66 16 11 C 0.05 1.06 1.48 -90.16 -0.13 0.93 16 12 C 0.16 3.87 6.89 -3.37 -0.02 3.84 16 13 C -0.12 -1.88 6.05 -24.75 -0.15 -2.03 16 14 C 0.11 1.66 3.33 -65.84 -0.22 1.44 16 15 H 0.11 1.86 7.63 -51.93 -0.40 1.47 16 16 N -0.72 -7.94 5.10 -51.79 -0.26 -8.21 16 17 C 0.51 6.69 6.95 -10.98 -0.08 6.61 16 18 O -0.51 -9.52 16.22 -13.94 -0.23 -9.75 16 19 C 0.06 0.54 3.84 -27.31 -0.10 0.43 16 20 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 21 C -0.15 -0.83 6.62 -25.20 -0.17 -1.00 16 22 C -0.14 -0.76 6.56 -24.73 -0.16 -0.93 16 23 C 0.05 0.42 3.76 -26.84 -0.10 0.32 16 24 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 25 C 0.52 5.00 7.48 -10.99 -0.08 4.92 16 26 N -0.85 -3.67 8.86 31.22 0.28 -3.39 16 27 O -0.51 -8.09 17.41 -13.43 -0.23 -8.32 16 28 O -0.32 -3.98 10.04 -64.24 -0.64 -4.62 16 29 C 0.05 0.70 7.58 37.93 0.29 0.99 16 30 O -0.37 -6.86 11.17 -35.23 -0.39 -7.26 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.88 7.36 -51.93 -0.38 1.49 16 36 H 0.10 1.74 8.05 -51.93 -0.42 1.33 16 37 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 38 H 0.40 2.98 8.53 -40.82 -0.35 2.64 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.09 0.63 8.05 -51.93 -0.42 0.22 16 43 H 0.40 0.23 8.83 -40.82 -0.36 -0.13 16 44 H 0.41 1.51 8.93 -40.82 -0.36 1.14 16 45 H 0.06 0.87 8.02 -51.92 -0.42 0.46 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -40.35 382.41 -8.84 -49.19 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.84 Total: 0.79 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -1.22 Total: 11.57 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.02 Total: -54.31 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.50 Total: -29.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.35 -8.84 -49.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053924556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.851 kcal (2) G-P(sol) polarization free energy of solvation -40.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds