Wall clock time and date at job start Tue Mar 31 2020 23:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99657 * 2 1 4 4 H 1.48504 * 109.47049 * 274.98706 * 3 2 1 5 5 H 1.48492 * 109.47227 * 34.98877 * 3 2 1 6 6 H 1.48500 * 109.46905 * 154.98951 * 3 2 1 7 7 C 1.38811 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99816 * 185.08361 * 7 2 1 9 9 N 1.36933 * 120.00216 * 5.09233 * 7 2 1 10 10 C 1.47774 * 134.40796 * 173.51320 * 9 7 2 11 11 C 1.52940 * 85.80969 * 156.09230 * 10 9 7 12 12 C 1.47776 * 134.40861 * 353.52936 * 9 7 2 13 13 C 1.54266 * 115.18135 * 266.70346 * 11 10 9 14 14 C 1.55478 * 100.66699 * 194.61959 * 13 11 10 15 15 H 1.09001 * 110.82306 * 274.55708 * 14 13 11 16 16 N 1.46494 * 110.82757 * 151.18891 * 14 13 11 17 17 C 1.34785 * 119.99857 * 157.71636 * 16 14 13 18 18 O 1.21281 * 120.00035 * 359.97438 * 17 16 14 19 19 C 1.50696 * 119.99696 * 180.02562 * 17 16 14 20 20 H 1.08991 * 109.87440 * 304.29682 * 19 17 16 21 21 C 1.54106 * 109.88103 * 65.30733 * 19 17 16 22 22 C 1.54806 * 104.18659 * 121.59863 * 21 19 17 23 23 C 1.54991 * 102.09821 * 20.88388 * 22 21 19 24 24 H 1.09008 * 110.62084 * 81.47034 * 23 22 21 25 25 C 1.50692 * 110.62457 * 204.31803 * 23 22 21 26 26 N 1.34778 * 119.99768 * 294.99851 * 25 23 22 27 27 O 1.21280 * 120.00651 * 114.99273 * 25 23 22 28 28 O 1.43744 * 109.99992 * 183.20801 * 19 17 16 29 29 C 1.54471 * 102.54833 * 32.87026 * 14 13 11 30 30 O 1.42543 * 116.18982 * 141.02534 * 11 10 9 31 31 H 0.97003 * 120.00389 * 0.02562 * 1 2 3 32 32 H 1.09001 * 113.81804 * 41.87228 * 10 9 7 33 33 H 1.09002 * 113.81802 * 270.31550 * 10 9 7 34 34 H 1.08995 * 113.81511 * 89.68469 * 12 9 7 35 35 H 1.09000 * 113.81912 * 318.12992 * 12 9 7 36 36 H 1.09000 * 111.33366 * 76.72654 * 13 11 10 37 37 H 1.09000 * 111.08416 * 312.41047 * 13 11 10 38 38 H 0.97003 * 120.00426 * 337.71914 * 16 14 13 39 39 H 1.08995 * 110.48672 * 240.27868 * 21 19 17 40 40 H 1.09002 * 110.48320 * 2.79442 * 21 19 17 41 41 H 1.09001 * 110.90358 * 139.07842 * 22 21 19 42 42 H 1.08995 * 110.91245 * 262.68112 * 22 21 19 43 43 H 0.97000 * 119.99802 * 359.97438 * 26 25 23 44 44 H 0.97001 * 120.00336 * 179.97438 * 26 25 23 45 45 H 1.09008 * 109.82754 * 98.24135 * 29 14 13 46 46 H 1.09001 * 109.83399 * 219.13076 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0823 9 7 1.3296 -2.3857 -0.1063 10 6 1.7314 -3.7995 -0.2587 11 6 0.3726 -4.1353 0.3577 12 6 -0.1001 -2.7592 -0.1140 13 6 0.3766 -4.3326 1.8877 14 6 -1.0051 -5.0151 2.0935 15 1 -1.7957 -4.2702 2.1837 16 7 -0.9830 -5.8928 3.2662 17 6 -2.1349 -6.2198 3.8850 18 8 -3.1896 -5.7871 3.4712 19 6 -2.1121 -7.1221 5.0918 20 1 -1.6103 -8.0578 4.8454 21 6 -1.3789 -6.4246 6.2539 22 6 -2.4276 -6.3799 7.3918 23 6 -3.4117 -7.5008 6.9708 24 1 -3.0308 -8.4779 7.2684 25 6 -4.7753 -7.2610 7.5656 26 7 -4.9446 -7.3043 8.9021 27 8 -5.7205 -7.0290 6.8420 28 8 -3.4543 -7.3885 5.5319 29 6 -1.1702 -5.8366 0.7958 30 8 -0.3093 -5.2579 -0.1961 31 1 -0.4851 0.8400 -0.0004 32 1 2.5797 -4.0856 0.3633 33 1 1.8352 -4.1183 -1.2959 34 1 -0.5483 -2.7645 -1.1076 35 1 -0.6991 -2.2232 0.6222 36 1 0.4253 -3.3774 2.4106 37 1 1.1898 -4.9896 2.1962 38 1 -0.1394 -6.2385 3.5975 39 1 -0.5088 -7.0055 6.5596 40 1 -1.0815 -5.4160 5.9667 41 1 -1.9678 -6.6071 8.3536 42 1 -2.9292 -5.4127 7.4209 43 1 -4.1887 -7.4901 9.4809 44 1 -5.8222 -7.1496 9.2851 45 1 -0.8834 -6.8729 0.9752 46 1 -2.2061 -5.7926 0.4595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053924556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:43 Heat of formation + Delta-G solvation = -128.231992 kcal Electronic energy + Delta-G solvation = -29809.881498 eV Core-core repulsion = 25507.411156 eV Total energy + Delta-G solvation = -4302.470342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88312 -41.34857 -40.37127 -39.00239 -37.86993 -35.82097 -34.87977 -34.15564 -33.23233 -32.04884 -30.61512 -29.71010 -27.51339 -26.74723 -25.91798 -23.92437 -23.34439 -22.55908 -21.63032 -21.57667 -20.38145 -19.10027 -18.75924 -18.42664 -17.85302 -17.61542 -17.49228 -17.18042 -16.64769 -16.49670 -16.22804 -15.92525 -15.64620 -15.56209 -15.29933 -15.11980 -14.64609 -14.52086 -14.40107 -14.23539 -13.70840 -13.41287 -13.26348 -12.89707 -12.87155 -12.78294 -12.71774 -12.63319 -12.57817 -12.39095 -12.00223 -11.93717 -11.80652 -11.47900 -11.44412 -10.94864 -10.89090 -10.73055 -10.55201 -10.37212 -10.22731 -8.98334 -7.93900 -5.28539 1.45277 1.46561 1.48218 1.52551 1.57028 1.66393 2.28567 2.43103 2.82184 3.04209 3.18432 3.31637 3.37444 3.53856 3.64265 3.71946 3.76925 3.79197 3.87047 4.02530 4.04180 4.06745 4.14668 4.39546 4.61501 4.63754 4.67125 4.75226 4.81303 4.85022 4.87225 4.92919 4.95955 5.02549 5.06774 5.12625 5.19066 5.35741 5.47851 5.59874 5.84236 5.87282 6.14644 6.43839 6.49315 6.86248 7.18557 7.31530 7.56910 8.51023 9.23969 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.002302 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.282383 B =12158.892477 C =12940.148447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.258 1.258 7 C -0.230 4.230 8 H 0.095 0.905 9 N -0.629 5.629 10 C 0.133 3.867 11 C 0.075 3.925 12 C 0.151 3.849 13 C -0.104 4.104 14 C 0.123 3.877 15 H 0.070 0.930 16 N -0.693 5.693 17 C 0.503 3.497 18 O -0.577 6.577 19 C 0.060 3.940 20 H 0.143 0.857 21 C -0.140 4.140 22 C -0.137 4.137 23 C 0.050 3.950 24 H 0.148 0.852 25 C 0.512 3.488 26 N -0.825 5.825 27 O -0.591 6.591 28 O -0.370 6.370 29 C 0.044 3.956 30 O -0.378 6.378 31 H 0.248 0.752 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.005 0.995 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.425 0.575 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.057 0.943 43 H 0.423 0.577 44 H 0.410 0.590 45 H 0.098 0.902 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -21.900 23.728 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.182 1.182 7 C -0.358 4.358 8 H 0.113 0.887 9 N -0.357 5.357 10 C 0.008 3.992 11 C 0.034 3.966 12 C 0.025 3.975 13 C -0.142 4.142 14 C 0.017 3.983 15 H 0.088 0.912 16 N -0.348 5.348 17 C 0.290 3.710 18 O -0.455 6.455 19 C -0.001 4.001 20 H 0.160 0.840 21 C -0.178 4.178 22 C -0.175 4.175 23 C -0.010 4.010 24 H 0.165 0.835 25 C 0.296 3.704 26 N -0.391 5.391 27 O -0.470 6.470 28 O -0.288 6.288 29 C -0.034 4.034 30 O -0.296 6.296 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.264 0.736 39 H 0.163 0.837 40 H 0.096 0.904 41 H 0.162 0.838 42 H 0.076 0.924 43 H 0.256 0.744 44 H 0.242 0.758 45 H 0.116 0.884 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.270 -21.256 22.527 30.998 hybrid contribution -0.210 1.509 -0.145 1.530 sum 1.060 -19.747 22.382 29.867 Atomic orbital electron populations 1.70058 1.06814 1.25727 1.57787 1.25752 0.96491 1.01257 1.02762 0.85022 0.78140 0.78845 0.77121 1.21841 1.22363 1.18242 1.19435 0.91468 0.82641 1.42257 0.88739 1.46024 1.02794 1.02026 1.84873 1.22686 0.94700 0.83232 0.98604 1.23820 0.93867 0.85234 0.93674 1.22392 0.87775 0.90725 0.96642 1.22890 0.96249 1.02060 0.93005 1.22225 0.98556 0.91919 0.85631 0.91175 1.45553 1.09817 1.49971 1.29506 1.21402 0.83378 0.81184 0.85026 1.90775 1.32807 1.54950 1.66958 1.22982 0.84879 0.99285 0.92944 0.83988 1.23087 0.99872 1.02923 0.91890 1.23195 0.95151 0.97307 1.01831 1.23428 0.92697 1.03230 0.81619 0.83495 1.20785 0.90412 0.75529 0.83643 1.43514 1.16372 1.73678 1.05536 1.90808 1.44500 1.49744 1.61969 1.89133 1.27129 1.92162 1.20362 1.23594 0.94232 0.98085 0.87455 1.88297 1.58999 1.44678 1.37604 0.94326 0.89877 0.93873 0.97689 0.94113 0.90301 0.85901 0.73590 0.83717 0.90417 0.83757 0.92433 0.74432 0.75784 0.88355 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.36 11.52 21.65 0.25 -59.11 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.98 45.73 29.56 68.60 2.03 47.75 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.23 -12.76 10.69 84.03 0.90 -11.86 16 8 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 9 N -0.63 -32.47 3.69 -739.52 -2.73 -35.19 16 10 C 0.13 5.31 8.50 86.11 0.73 6.05 16 11 C 0.07 2.88 1.48 -10.35 -0.02 2.87 16 12 C 0.15 7.71 6.89 86.12 0.59 8.30 16 13 C -0.10 -3.10 6.05 31.88 0.19 -2.90 16 14 C 0.12 3.59 3.33 46.35 0.15 3.75 16 15 H 0.07 2.62 7.63 -2.39 -0.02 2.60 16 16 N -0.69 -13.97 5.10 -436.15 -2.22 -16.20 16 17 C 0.50 12.93 6.95 87.65 0.61 13.54 16 18 O -0.58 -22.98 16.22 15.61 0.25 -22.73 16 19 C 0.06 0.93 3.84 30.22 0.12 1.05 16 20 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 21 C -0.14 -0.99 6.62 31.58 0.21 -0.78 16 22 C -0.14 -1.00 6.56 31.89 0.21 -0.79 16 23 C 0.05 0.65 3.76 30.53 0.11 0.77 16 24 H 0.15 0.50 8.14 -2.38 -0.02 0.48 16 25 C 0.51 9.63 7.48 87.65 0.66 10.28 16 26 N -0.82 -5.61 8.86 -173.54 -1.54 -7.15 16 27 O -0.59 -19.96 17.41 15.12 0.26 -19.70 16 28 O -0.37 -9.09 10.04 -121.24 -1.22 -10.31 16 29 C 0.04 1.34 7.58 72.48 0.55 1.89 16 30 O -0.38 -13.87 11.17 -148.98 -1.66 -15.53 16 31 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.04 2.30 7.36 -2.39 -0.02 2.28 16 36 H 0.08 2.74 8.05 -2.39 -0.02 2.72 16 37 H 0.12 2.57 7.98 -2.39 -0.02 2.55 16 38 H 0.42 4.45 8.53 -92.71 -0.79 3.65 16 39 H 0.14 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.08 0.81 7.69 -2.39 -0.02 0.79 16 41 H 0.14 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 0.78 8.05 -2.39 -0.02 0.76 16 43 H 0.42 -1.01 8.83 -92.71 -0.82 -1.83 16 44 H 0.41 2.60 8.93 -92.71 -0.83 1.78 16 45 H 0.10 2.37 8.02 -2.38 -0.02 2.35 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -99.47 382.41 -2.49 -101.96 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -1.40 Total: 7.59 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.49 Total: 28.63 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -6.24 Total: -117.65 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -2.36 Total: -68.27 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -99.47 -2.49 -101.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053924556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.277 kcal (2) G-P(sol) polarization free energy of solvation -99.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds