Wall clock time and date at job start Tue Mar 31 2020 23:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47110 * 300.00734 * 3 2 1 6 6 H 1.48498 * 109.46729 * 60.00562 * 3 2 1 7 7 C 1.38814 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.47477 * 125.69181 * 359.97438 * 9 7 2 11 11 C 1.55396 * 104.78943 * 155.59593 * 10 9 7 12 12 H 1.08996 * 113.09614 * 157.53981 * 11 10 9 13 13 O 1.42774 * 107.09004 * 281.68993 * 11 10 9 14 14 C 1.42655 * 115.69231 * 166.05005 * 13 11 10 15 15 C 1.53991 * 108.28655 * 295.40946 * 14 13 11 16 16 N 1.47050 * 107.12569 * 55.84650 * 15 14 13 17 17 C 1.34777 * 120.12050 * 130.14802 * 16 15 14 18 18 O 1.21283 * 119.99750 * 179.72551 * 17 16 15 19 19 C 1.50702 * 119.99928 * 0.02562 * 17 16 15 20 20 H 1.09004 * 109.86876 * 304.01845 * 19 17 16 21 21 C 1.54099 * 109.87744 * 65.02721 * 19 17 16 22 22 C 1.54812 * 104.18405 * 121.45793 * 21 19 17 23 23 C 1.54990 * 102.09302 * 20.87727 * 22 21 19 24 24 H 1.08998 * 110.62001 * 81.63880 * 23 22 21 25 25 C 1.50709 * 110.61749 * 204.47633 * 23 22 21 26 26 N 1.34779 * 119.99799 * 295.00548 * 25 23 22 27 27 O 1.21276 * 119.99962 * 114.99867 * 25 23 22 28 28 O 1.43740 * 109.87736 * 183.01549 * 19 17 16 29 29 C 1.45666 * 119.75833 * 309.88106 * 16 15 14 30 30 H 1.09006 * 109.95208 * 165.76045 * 29 16 15 31 31 C 1.47216 * 125.68744 * 179.97438 * 9 7 2 32 32 H 0.96996 * 119.99967 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.37462 * 36.76224 * 10 9 7 34 34 H 1.09007 * 110.46943 * 274.47162 * 10 9 7 35 35 H 1.08992 * 109.67854 * 55.26456 * 14 13 11 36 36 H 1.08997 * 109.68171 * 175.82356 * 14 13 11 37 37 H 1.08996 * 110.04760 * 296.42175 * 15 14 13 38 38 H 1.09004 * 109.93898 * 175.20540 * 15 14 13 39 39 H 1.08998 * 110.48658 * 240.12772 * 21 19 17 40 40 H 1.08990 * 110.49088 * 2.64441 * 21 19 17 41 41 H 1.09002 * 110.91005 * 139.08156 * 22 21 19 42 42 H 1.08997 * 110.90405 * 262.67724 * 22 21 19 43 43 H 0.96995 * 119.99776 * 359.97438 * 26 25 23 44 44 H 0.96996 * 119.99561 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.95918 * 61.89742 * 31 9 7 46 46 H 1.09003 * 109.96089 * 300.65975 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1420 -2.5343 0.0005 11 6 -0.4016 -3.9348 -0.6207 12 1 -1.3698 -4.3523 -0.3444 13 8 -0.2550 -3.8004 -2.0345 14 6 -0.1473 -5.0216 -2.7640 15 6 1.1534 -5.7266 -2.3367 16 7 1.0990 -5.8875 -0.8760 17 6 1.3512 -7.0882 -0.3180 18 8 1.3106 -7.2172 0.8872 19 6 1.6902 -8.2687 -1.1913 20 1 0.8995 -8.4260 -1.9249 21 6 3.0304 -8.0207 -1.9104 22 6 3.9260 -9.2008 -1.4612 23 6 2.8786 -10.2471 -1.0027 24 1 2.4794 -10.7912 -1.8587 25 6 3.4831 -11.2011 -0.0048 26 7 4.4777 -12.0291 -0.3811 27 8 3.0746 -11.2236 1.1369 28 8 1.8475 -9.4461 -0.3820 29 6 0.7773 -4.7432 -0.0341 30 1 0.5333 -5.0798 0.9736 31 6 1.9315 -3.7297 -0.0016 32 1 -0.4850 0.8400 0.0004 33 1 -0.6012 -1.7571 -0.6103 34 1 -0.5284 -2.4933 1.0190 35 1 -1.0034 -5.6585 -2.5418 36 1 -0.1144 -4.8093 -3.8325 37 1 2.0154 -5.1185 -2.6108 38 1 1.2210 -6.7038 -2.8150 39 1 2.8919 -8.0368 -2.9915 40 1 3.4619 -7.0704 -1.5962 41 1 4.5162 -9.5807 -2.2952 42 1 4.5704 -8.9066 -0.6328 43 1 4.8042 -12.0112 -1.2943 44 1 4.8670 -12.6428 0.2613 45 1 2.5252 -3.8705 0.9016 46 1 2.5602 -3.8533 -0.8835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083191692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:41 Heat of formation + Delta-G solvation = -103.643205 kcal Electronic energy + Delta-G solvation = -31134.713663 eV Core-core repulsion = 26833.309571 eV Total energy + Delta-G solvation = -4301.404092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08627 -40.08197 -38.83584 -37.66544 -35.72700 -34.77237 -34.17860 -32.58693 -32.16861 -30.44954 -29.77957 -27.77189 -27.33035 -25.19354 -24.11608 -23.37943 -22.39080 -20.93930 -20.71606 -20.29983 -18.73550 -18.07661 -17.75787 -17.14302 -17.02837 -16.68552 -16.47890 -15.68997 -15.31898 -15.08951 -14.93768 -14.88491 -14.49104 -14.40330 -14.08394 -13.90752 -13.72528 -13.24062 -12.91410 -12.78768 -12.37533 -12.18587 -12.08364 -11.90277 -11.79578 -11.41896 -11.17984 -11.13341 -10.95774 -10.77834 -10.65274 -10.62865 -10.13293 -10.09738 -10.07555 -9.85642 -9.72394 -9.51638 -9.36705 -8.68043 -8.26649 -6.84182 -5.64805 -3.06049 2.23648 2.47916 2.61122 3.00309 3.41759 3.46852 3.49526 3.67213 3.93760 4.14235 4.23131 4.32862 4.40848 4.50735 4.53764 4.69811 4.82800 4.88869 5.01070 5.07342 5.19697 5.20605 5.25156 5.41044 5.42966 5.49216 5.56159 5.61547 5.69781 5.82946 5.83330 6.06178 6.17978 6.27223 6.40533 6.47264 6.64365 6.83508 6.89767 7.24689 7.41877 7.58480 7.73157 7.89104 7.90375 8.22723 8.36784 9.20766 9.81830 10.44962 11.39984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.002750 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.812063 B =10178.536812 C =10568.353623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.160 3.840 11 C 0.054 3.946 12 H 0.071 0.929 13 O -0.353 6.353 14 C 0.046 3.954 15 C 0.069 3.931 16 N -0.597 5.597 17 C 0.510 3.490 18 O -0.513 6.513 19 C 0.060 3.940 20 H 0.099 0.901 21 C -0.146 4.146 22 C -0.142 4.142 23 C 0.054 3.946 24 H 0.102 0.898 25 C 0.521 3.479 26 N -0.853 5.853 27 O -0.511 6.511 28 O -0.316 6.316 29 C 0.101 3.899 30 H 0.107 0.893 31 C 0.137 3.863 32 H 0.252 0.748 33 H 0.124 0.876 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.401 0.599 44 H 0.406 0.594 45 H 0.027 0.973 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -22.452 -11.765 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.321 5.321 10 C 0.035 3.965 11 C -0.005 4.005 12 H 0.089 0.911 13 O -0.271 6.271 14 C -0.032 4.032 15 C -0.054 4.054 16 N -0.332 5.332 17 C 0.296 3.704 18 O -0.386 6.386 19 C -0.001 4.001 20 H 0.116 0.884 21 C -0.184 4.184 22 C -0.180 4.180 23 C -0.007 4.007 24 H 0.119 0.881 25 C 0.304 3.696 26 N -0.420 5.420 27 O -0.384 6.384 28 O -0.232 6.232 29 C -0.003 4.003 30 H 0.125 0.875 31 C 0.010 3.990 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.229 0.771 44 H 0.237 0.763 45 H 0.045 0.955 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.566 -22.019 -10.257 24.921 hybrid contribution 0.925 0.234 -0.368 1.023 sum 6.492 -21.786 -10.625 25.093 Atomic orbital electron populations 1.69738 1.04885 1.24772 1.57673 1.24775 0.95736 0.97688 1.02371 0.85971 0.78586 0.83540 0.77216 1.20593 1.21742 1.21762 1.19080 0.90463 0.82135 1.42955 0.90403 1.44336 1.01448 0.99502 1.86838 1.22138 0.85503 0.90969 0.97894 1.24218 0.94817 1.00541 0.80967 0.91117 1.88019 1.93513 1.27193 1.18348 1.22932 0.94912 0.88095 0.97255 1.22730 1.00856 1.01556 0.80255 1.47661 1.69674 1.08743 1.07121 1.20345 0.77662 0.83490 0.88892 1.90757 1.49788 1.83602 1.14501 1.22689 0.98955 0.86170 0.92331 0.88399 1.23020 0.93564 1.00572 1.01256 1.23121 0.97791 0.94444 1.02597 1.23075 0.89740 0.93393 0.94531 0.88094 1.20158 0.79820 0.80818 0.88802 1.43713 1.39508 1.42283 1.16501 1.90836 1.60123 1.67588 1.19878 1.89213 1.55123 1.30131 1.48760 1.22363 0.97274 0.85186 0.95462 0.87550 1.21332 0.93537 0.85804 0.98307 0.93665 0.85879 0.95086 0.93343 0.88212 0.89817 0.89545 0.88791 0.89001 0.88728 0.89484 0.77098 0.76274 0.95483 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.43 3.40 -169.98 -0.58 -16.01 16 10 C 0.16 3.92 5.47 -2.24 -0.01 3.91 16 11 C 0.05 1.06 4.13 -24.67 -0.10 0.96 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 O -0.35 -6.70 10.09 -35.23 -0.36 -7.06 16 14 C 0.05 0.60 7.04 37.67 0.27 0.86 16 15 C 0.07 0.80 5.47 -3.23 -0.02 0.79 16 16 N -0.60 -9.21 2.72 -164.39 -0.45 -9.66 16 17 C 0.51 8.21 6.87 -10.98 -0.08 8.13 16 18 O -0.51 -10.84 15.93 -14.01 -0.22 -11.06 16 19 C 0.06 0.68 2.95 -27.31 -0.08 0.60 16 20 H 0.10 0.83 7.40 -51.93 -0.38 0.44 16 21 C -0.15 -1.11 5.09 -25.20 -0.13 -1.24 16 22 C -0.14 -0.93 6.57 -24.73 -0.16 -1.09 16 23 C 0.05 0.47 3.76 -26.83 -0.10 0.37 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 C 0.52 5.41 7.48 -10.98 -0.08 5.33 16 26 N -0.85 -4.20 8.86 31.22 0.28 -3.92 16 27 O -0.51 -8.47 17.40 -13.47 -0.23 -8.71 16 28 O -0.32 -4.44 10.04 -64.29 -0.65 -5.09 16 29 C 0.10 1.94 3.09 -67.25 -0.21 1.73 16 30 H 0.11 2.20 7.06 -51.93 -0.37 1.83 16 31 C 0.14 3.01 6.87 -3.32 -0.02 2.99 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.12 3.40 5.85 -51.93 -0.30 3.10 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.02 7.55 -51.93 -0.39 0.63 16 38 H 0.09 0.65 4.99 -51.93 -0.26 0.39 16 39 H 0.09 0.39 7.78 -51.93 -0.40 -0.02 16 40 H 0.09 0.85 7.49 -51.93 -0.39 0.46 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.40 0.48 8.83 -40.82 -0.36 0.12 16 44 H 0.41 1.72 8.93 -40.82 -0.36 1.36 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.58 7.23 -51.93 -0.38 0.20 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -39.90 364.25 -8.68 -48.58 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.52 Total: -0.11 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: -0.98 Total: 16.69 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.19 Total: -55.87 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.46 Total: -31.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.90 -8.68 -48.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083191692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.066 kcal (2) G-P(sol) polarization free energy of solvation -39.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds