Wall clock time and date at job start Tue Mar 31 2020 23:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47110 * 300.00734 * 3 2 1 6 6 H 1.48498 * 109.46729 * 60.00562 * 3 2 1 7 7 C 1.38814 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.47477 * 125.69181 * 359.97438 * 9 7 2 11 11 C 1.55396 * 104.78943 * 155.59593 * 10 9 7 12 12 H 1.08996 * 113.09614 * 157.53981 * 11 10 9 13 13 O 1.42774 * 107.09004 * 281.68993 * 11 10 9 14 14 C 1.42655 * 115.69231 * 166.05005 * 13 11 10 15 15 C 1.53991 * 108.28655 * 295.40946 * 14 13 11 16 16 N 1.47050 * 107.12569 * 55.84650 * 15 14 13 17 17 C 1.34777 * 120.12050 * 130.14802 * 16 15 14 18 18 O 1.21283 * 119.99750 * 179.72551 * 17 16 15 19 19 C 1.50702 * 119.99928 * 0.02562 * 17 16 15 20 20 H 1.09004 * 109.86876 * 304.01845 * 19 17 16 21 21 C 1.54099 * 109.87744 * 65.02721 * 19 17 16 22 22 C 1.54812 * 104.18405 * 121.45793 * 21 19 17 23 23 C 1.54990 * 102.09302 * 20.87727 * 22 21 19 24 24 H 1.08998 * 110.62001 * 81.63880 * 23 22 21 25 25 C 1.50709 * 110.61749 * 204.47633 * 23 22 21 26 26 N 1.34779 * 119.99799 * 295.00548 * 25 23 22 27 27 O 1.21276 * 119.99962 * 114.99867 * 25 23 22 28 28 O 1.43740 * 109.87736 * 183.01549 * 19 17 16 29 29 C 1.45666 * 119.75833 * 309.88106 * 16 15 14 30 30 H 1.09006 * 109.95208 * 165.76045 * 29 16 15 31 31 C 1.47216 * 125.68744 * 179.97438 * 9 7 2 32 32 H 0.96996 * 119.99967 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.37462 * 36.76224 * 10 9 7 34 34 H 1.09007 * 110.46943 * 274.47162 * 10 9 7 35 35 H 1.08992 * 109.67854 * 55.26456 * 14 13 11 36 36 H 1.08997 * 109.68171 * 175.82356 * 14 13 11 37 37 H 1.08996 * 110.04760 * 296.42175 * 15 14 13 38 38 H 1.09004 * 109.93898 * 175.20540 * 15 14 13 39 39 H 1.08998 * 110.48658 * 240.12772 * 21 19 17 40 40 H 1.08990 * 110.49088 * 2.64441 * 21 19 17 41 41 H 1.09002 * 110.91005 * 139.08156 * 22 21 19 42 42 H 1.08997 * 110.90405 * 262.67724 * 22 21 19 43 43 H 0.96995 * 119.99776 * 359.97438 * 26 25 23 44 44 H 0.96996 * 119.99561 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.95918 * 61.89742 * 31 9 7 46 46 H 1.09003 * 109.96089 * 300.65975 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1420 -2.5343 0.0005 11 6 -0.4016 -3.9348 -0.6207 12 1 -1.3698 -4.3523 -0.3444 13 8 -0.2550 -3.8004 -2.0345 14 6 -0.1473 -5.0216 -2.7640 15 6 1.1534 -5.7266 -2.3367 16 7 1.0990 -5.8875 -0.8760 17 6 1.3512 -7.0882 -0.3180 18 8 1.3106 -7.2172 0.8872 19 6 1.6902 -8.2687 -1.1913 20 1 0.8995 -8.4260 -1.9249 21 6 3.0304 -8.0207 -1.9104 22 6 3.9260 -9.2008 -1.4612 23 6 2.8786 -10.2471 -1.0027 24 1 2.4794 -10.7912 -1.8587 25 6 3.4831 -11.2011 -0.0048 26 7 4.4777 -12.0291 -0.3811 27 8 3.0746 -11.2236 1.1369 28 8 1.8475 -9.4461 -0.3820 29 6 0.7773 -4.7432 -0.0341 30 1 0.5333 -5.0798 0.9736 31 6 1.9315 -3.7297 -0.0016 32 1 -0.4850 0.8400 0.0004 33 1 -0.6012 -1.7571 -0.6103 34 1 -0.5284 -2.4933 1.0190 35 1 -1.0034 -5.6585 -2.5418 36 1 -0.1144 -4.8093 -3.8325 37 1 2.0154 -5.1185 -2.6108 38 1 1.2210 -6.7038 -2.8150 39 1 2.8919 -8.0368 -2.9915 40 1 3.4619 -7.0704 -1.5962 41 1 4.5162 -9.5807 -2.2952 42 1 4.5704 -8.9066 -0.6328 43 1 4.8042 -12.0112 -1.2943 44 1 4.8670 -12.6428 0.2613 45 1 2.5252 -3.8705 0.9016 46 1 2.5602 -3.8533 -0.8835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083191692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:40 Heat of formation + Delta-G solvation = -137.424412 kcal Electronic energy + Delta-G solvation = -31136.178526 eV Core-core repulsion = 26833.309571 eV Total energy + Delta-G solvation = -4302.868955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13914 -41.11997 -39.95786 -38.79952 -37.41778 -36.09797 -34.88219 -34.27358 -33.09097 -31.61126 -31.09844 -29.24415 -28.95290 -26.62791 -25.48200 -24.50079 -23.14615 -22.34974 -21.80858 -21.60352 -19.98065 -19.05814 -18.91294 -18.46955 -18.15959 -17.68476 -17.48939 -16.94672 -16.80712 -16.34746 -16.19581 -15.97302 -15.65753 -15.50875 -15.39700 -15.04736 -14.74722 -14.57747 -14.43973 -14.09423 -13.61873 -13.55855 -13.21163 -13.09424 -12.89084 -12.75100 -12.69675 -12.59054 -12.48693 -12.12717 -12.00122 -11.99271 -11.83135 -11.48495 -11.31521 -11.01096 -10.92726 -10.80791 -10.72451 -10.51259 -9.61011 -8.93671 -7.78488 -5.23787 1.41079 1.46406 1.48946 1.49961 1.53538 1.59534 2.20743 2.49546 2.85065 2.96326 3.21162 3.32777 3.45861 3.56320 3.60325 3.70641 3.83405 3.86445 4.01490 4.03985 4.05650 4.10115 4.21280 4.27270 4.36434 4.42198 4.56911 4.58473 4.77164 4.79421 4.82171 4.89622 4.92777 4.94908 5.03770 5.25910 5.36152 5.44170 5.59719 5.72214 5.87324 6.22752 6.26131 6.44538 6.47778 7.01955 7.06881 7.31764 7.72134 8.35912 9.24286 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.002750 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.812063 B =10178.536812 C =10568.353623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.162 3.838 11 C 0.076 3.924 12 H 0.089 0.911 13 O -0.383 6.383 14 C 0.036 3.964 15 C 0.068 3.932 16 N -0.592 5.592 17 C 0.502 3.498 18 O -0.579 6.579 19 C 0.064 3.936 20 H 0.141 0.859 21 C -0.143 4.143 22 C -0.134 4.134 23 C 0.050 3.950 24 H 0.151 0.849 25 C 0.513 3.487 26 N -0.824 5.824 27 O -0.591 6.591 28 O -0.368 6.368 29 C 0.114 3.886 30 H 0.082 0.918 31 C 0.141 3.859 32 H 0.249 0.751 33 H 0.092 0.908 34 H 0.004 0.996 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.071 0.929 41 H 0.148 0.852 42 H 0.057 0.943 43 H 0.423 0.577 44 H 0.410 0.590 45 H 0.009 0.991 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -24.564 -16.166 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.812 3.188 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.340 5.340 10 C 0.036 3.964 11 C 0.016 3.984 12 H 0.106 0.894 13 O -0.302 6.302 14 C -0.041 4.041 15 C -0.052 4.052 16 N -0.326 5.326 17 C 0.291 3.709 18 O -0.457 6.457 19 C 0.003 3.997 20 H 0.158 0.842 21 C -0.180 4.180 22 C -0.172 4.172 23 C -0.011 4.011 24 H 0.168 0.832 25 C 0.297 3.703 26 N -0.390 5.390 27 O -0.470 6.470 28 O -0.286 6.286 29 C 0.008 3.992 30 H 0.100 0.900 31 C 0.015 3.985 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.152 0.848 37 H 0.100 0.900 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.090 0.910 41 H 0.166 0.834 42 H 0.076 0.924 43 H 0.256 0.744 44 H 0.242 0.758 45 H 0.027 0.973 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.091 -24.187 -14.768 29.213 hybrid contribution 0.526 0.804 0.964 1.361 sum 7.618 -23.384 -13.804 28.202 Atomic orbital electron populations 1.69996 1.06225 1.25181 1.58280 1.25643 0.96678 1.00957 1.02327 0.84924 0.77959 0.79060 0.76811 1.19220 1.21409 1.21998 1.19420 0.90880 0.83371 1.43011 0.90257 1.44576 1.02214 1.00404 1.86768 1.21859 0.84776 0.93368 0.96373 1.23757 0.95593 0.97061 0.81970 0.89393 1.87941 1.93820 1.31079 1.17367 1.23388 0.96200 0.86269 0.98198 1.23069 1.00064 1.04516 0.77596 1.47708 1.69022 1.07392 1.08506 1.21527 0.75884 0.84671 0.88836 1.90727 1.52563 1.84671 1.17735 1.22938 1.02298 0.83185 0.91294 0.84197 1.23169 0.91199 0.99816 1.03832 1.23186 0.97134 0.93472 1.03378 1.23496 0.89496 0.93357 0.94709 0.83231 1.20754 0.80100 0.81260 0.88173 1.43500 1.37345 1.40378 1.17806 1.90806 1.62947 1.70179 1.23069 1.89180 1.56926 1.31416 1.51089 1.21849 0.95924 0.86023 0.95421 0.89970 1.21347 0.94449 0.85094 0.97645 0.94102 0.89000 0.97794 0.91702 0.84836 0.89984 0.83966 0.83314 0.91030 0.83358 0.92425 0.74401 0.75755 0.97289 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.09 21.65 0.22 -57.00 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 3 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.76 10.28 84.03 0.86 -12.89 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.61 -33.15 3.40 -691.71 -2.35 -35.50 16 10 C 0.16 8.36 5.47 87.02 0.48 8.83 16 11 C 0.08 3.04 4.13 31.93 0.13 3.17 16 12 H 0.09 3.19 8.14 -2.39 -0.02 3.18 16 13 O -0.38 -14.16 10.09 -148.98 -1.50 -15.66 16 14 C 0.04 0.80 7.04 72.32 0.51 1.31 16 15 C 0.07 1.31 5.47 86.61 0.47 1.79 16 16 N -0.59 -17.54 2.72 -792.39 -2.15 -19.69 16 17 C 0.50 15.82 6.87 87.66 0.60 16.42 16 18 O -0.58 -25.70 15.93 15.67 0.25 -25.45 16 19 C 0.06 1.22 2.95 30.22 0.09 1.31 16 20 H 0.14 1.50 7.40 -2.38 -0.02 1.48 16 21 C -0.14 -1.45 5.09 31.58 0.16 -1.29 16 22 C -0.13 -1.17 6.57 31.89 0.21 -0.97 16 23 C 0.05 0.70 3.76 30.53 0.11 0.81 16 24 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 25 C 0.51 10.04 7.48 87.66 0.66 10.70 16 26 N -0.82 -6.01 8.86 -173.53 -1.54 -7.55 16 27 O -0.59 -20.43 17.40 15.18 0.26 -20.16 16 28 O -0.37 -9.85 10.04 -121.20 -1.22 -11.06 16 29 C 0.11 4.48 3.09 45.88 0.14 4.62 16 30 H 0.08 3.64 7.06 -2.38 -0.02 3.62 16 31 C 0.14 6.43 6.87 86.46 0.59 7.02 16 32 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.09 5.36 5.85 -2.39 -0.01 5.34 16 34 H 0.00 0.23 8.14 -2.38 -0.02 0.22 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 1.68 7.55 -2.39 -0.02 1.66 16 38 H 0.14 1.13 4.99 -2.38 -0.01 1.12 16 39 H 0.15 -0.06 7.78 -2.39 -0.02 -0.08 16 40 H 0.07 1.08 7.49 -2.39 -0.02 1.06 16 41 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.06 0.86 8.05 -2.39 -0.02 0.84 16 43 H 0.42 -0.82 8.83 -92.71 -0.82 -1.64 16 44 H 0.41 2.76 8.93 -92.71 -0.83 1.93 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.04 1.58 7.23 -2.39 -0.02 1.57 16 Total: -1.00 -99.37 364.25 -1.12 -100.49 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -0.61 Total: 5.58 kcal Atomic # 6 Polarization: 32.17 SS G_CDS: 5.49 Total: 37.65 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.83 Total: -119.74 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -2.21 Total: -72.34 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -99.37 -1.12 -100.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083191692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.934 kcal (2) G-P(sol) polarization free energy of solvation -99.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds