Wall clock time and date at job start Tue Mar 31 2020 23:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.46928 * 269.99581 * 3 2 1 5 5 H 1.48496 * 109.47300 * 29.99434 * 3 2 1 6 6 H 1.48497 * 109.46981 * 149.99821 * 3 2 1 7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99966 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99647 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.48095 * 325.01233 * 10 9 7 12 12 C 1.52879 * 109.47735 * 204.99546 * 10 9 7 13 13 C 1.53971 * 109.71688 * 167.11245 * 12 10 9 14 14 C 1.52444 * 110.73016 * 315.64644 * 13 12 10 15 15 C 1.53804 * 109.41858 * 113.72703 * 14 13 12 16 16 C 1.52335 * 109.16760 * 282.12610 * 15 14 13 17 17 N 1.46966 * 109.08663 * 72.70215 * 16 15 14 18 18 C 1.34777 * 120.35239 * 68.37774 * 17 16 15 19 19 O 1.21542 * 119.99991 * 185.35388 * 18 17 16 20 20 C 1.47880 * 119.99749 * 5.35773 * 18 17 16 21 21 N 1.32845 * 119.72421 * 5.85997 * 20 18 17 22 22 C 1.31368 * 121.68958 * 180.02562 * 21 20 18 23 23 C 1.39004 * 120.93012 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.32158 * 179.97438 * 23 22 21 25 25 C 1.38711 * 119.34609 * 359.76545 * 23 22 21 26 26 C 1.38839 * 118.44723 * 0.48035 * 25 23 22 27 27 F 1.35105 * 120.48379 * 179.78229 * 26 25 23 28 28 C 1.45336 * 119.29025 * 248.65614 * 17 16 15 29 29 H 0.96995 * 119.99686 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00414 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.43253 * 47.03453 * 12 10 9 32 32 H 1.09007 * 109.43221 * 287.18589 * 12 10 9 33 33 H 1.08996 * 109.22372 * 195.32128 * 13 12 10 34 34 H 1.08998 * 109.22015 * 75.96897 * 13 12 10 35 35 H 1.08994 * 109.48007 * 353.74546 * 14 13 12 36 36 H 1.08999 * 109.48551 * 233.71334 * 14 13 12 37 37 H 1.08999 * 109.52207 * 162.21855 * 15 14 13 38 38 H 1.09004 * 109.52309 * 42.03500 * 15 14 13 39 39 H 1.08998 * 109.53358 * 312.82617 * 16 15 14 40 40 H 1.08996 * 109.53741 * 192.58709 * 16 15 14 41 41 H 1.08001 * 119.53347 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.78215 * 180.23069 * 25 23 22 43 43 H 1.09004 * 109.67666 * 162.80419 * 28 17 16 44 44 H 1.09004 * 109.67515 * 283.33834 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5646 -3.2067 0.5899 12 6 5.4981 -2.2593 0.6107 13 6 6.1469 -3.6229 0.9115 14 6 5.1440 -4.5645 1.5682 15 6 4.8455 -5.7369 0.6184 16 6 3.8798 -5.2706 -0.4635 17 7 4.5943 -4.3903 -1.3986 18 6 5.5490 -4.8888 -2.2088 19 8 6.2030 -4.1411 -2.9091 20 6 5.8007 -6.3456 -2.2458 21 7 5.0076 -7.1684 -1.5685 22 6 5.1959 -8.4685 -1.5739 23 6 6.2402 -9.0362 -2.2946 24 9 6.4229 -10.3748 -2.2910 25 6 7.0901 -8.2152 -3.0209 26 6 6.8699 -6.8447 -2.9924 27 9 7.6753 -6.0066 -3.6811 28 6 4.2647 -2.9753 -1.4358 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 5.4045 -1.6904 1.5357 32 1 6.1229 -1.7076 -0.0918 33 1 6.9943 -3.4772 1.5813 34 1 6.4987 -4.0662 -0.0201 35 1 4.2215 -4.0235 1.7789 36 1 5.5612 -4.9482 2.4993 37 1 4.3954 -6.5553 1.1803 38 1 5.7726 -6.0771 0.1572 39 1 3.0558 -4.7236 -0.0054 40 1 3.4905 -6.1348 -1.0017 41 1 4.5300 -9.1053 -1.0103 42 1 7.9065 -8.6318 -3.5921 43 1 5.0630 -2.4255 -1.9344 44 1 3.3276 -2.8308 -1.9735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088337187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:22 Heat of formation + Delta-G solvation = -39.680642 kcal Electronic energy + Delta-G solvation = -30901.856749 eV Core-core repulsion = 26492.138766 eV Total energy + Delta-G solvation = -4409.717983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.64816 -49.34134 -41.17227 -39.53795 -37.67485 -35.08761 -33.91751 -32.97985 -32.18675 -31.32000 -30.31039 -27.57447 -26.28875 -25.20886 -24.30162 -23.36686 -22.42815 -21.40264 -20.40334 -19.04200 -18.69706 -18.47486 -17.66849 -17.29904 -16.72554 -16.43586 -16.26088 -15.88041 -15.54353 -15.42835 -14.96464 -14.56505 -14.43374 -14.23640 -14.09635 -13.93602 -13.51224 -13.24559 -13.21994 -12.85796 -12.66720 -12.60234 -12.48009 -11.71758 -11.58192 -11.50640 -10.95370 -10.92521 -10.78185 -10.43985 -10.38683 -10.31186 -10.27543 -10.22906 -9.78320 -9.66380 -9.61254 -9.41526 -8.99557 -8.23881 -7.30926 -5.81021 -3.17301 -0.10176 0.32727 2.37179 2.87458 3.20353 3.28965 3.37395 3.40908 3.45293 3.51771 3.68164 4.02166 4.11356 4.48870 4.56792 4.85168 4.90846 5.02082 5.09353 5.12254 5.18874 5.34327 5.39402 5.50586 5.59163 5.63696 5.80444 5.82631 5.86996 5.91908 6.04749 6.10874 6.20451 6.24536 6.27640 6.40680 6.51566 6.58659 6.67515 6.70174 6.92689 7.04072 7.54431 7.93772 8.18316 8.38172 9.15772 9.88617 10.07871 11.36814 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003174 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.192393 B = 8820.772433 C = 9075.213686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.743 5.743 10 C 0.162 3.838 11 H 0.077 0.923 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.101 3.899 17 N -0.570 5.570 18 C 0.560 3.440 19 O -0.528 6.528 20 C 0.044 3.956 21 N -0.385 5.385 22 C 0.059 3.941 23 C 0.100 3.900 24 F -0.118 7.118 25 C -0.160 4.160 26 C 0.140 3.860 27 F -0.096 7.096 28 C 0.085 3.915 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.183 0.817 42 H 0.166 0.834 43 H 0.082 0.918 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.229 -20.739 -1.486 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.052 3.948 11 H 0.094 0.906 12 C -0.165 4.165 13 C -0.151 4.151 14 C -0.170 4.170 15 C -0.159 4.159 16 C -0.021 4.021 17 N -0.300 5.300 18 C 0.345 3.655 19 O -0.404 6.404 20 C -0.095 4.095 21 N -0.096 5.096 22 C -0.103 4.103 23 C 0.078 3.922 24 F -0.096 7.096 25 C -0.187 4.187 26 C 0.117 3.883 27 F -0.074 7.074 28 C -0.039 4.039 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.200 0.800 42 H 0.184 0.816 43 H 0.100 0.900 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.636 -19.956 -1.393 24.210 hybrid contribution 1.476 0.653 -0.682 1.752 sum 15.112 -19.303 -2.075 24.603 Atomic orbital electron populations 1.69700 1.05116 1.25926 1.57097 1.24664 0.95201 0.97238 1.01714 0.86574 0.79263 0.84969 0.77879 1.21015 1.21760 1.20225 1.19042 0.80390 0.94712 1.43557 0.89114 1.42774 1.04050 1.01888 1.89830 1.20816 0.91541 0.89828 0.92599 0.90608 1.22068 0.96824 0.96669 1.00974 1.21626 0.97695 0.95695 1.00051 1.21921 1.00682 0.96543 0.97809 1.22035 0.99656 0.97549 0.96625 1.22078 0.94938 0.94438 0.90647 1.47707 1.35640 1.10134 1.36539 1.17473 0.81398 0.85112 0.81490 1.90853 1.48310 1.58179 1.43105 1.21707 0.93692 0.96269 0.97864 1.68453 1.23553 1.03084 1.14472 1.23268 0.96438 0.91875 0.98732 1.18784 0.96726 0.78332 0.98350 1.91586 1.94585 1.28794 1.94642 1.21667 1.02700 0.91645 1.02661 1.18334 0.89904 0.87316 0.92716 1.91672 1.70084 1.69982 1.75617 1.22586 1.01649 0.78255 1.01432 0.93003 0.80467 0.91709 0.92403 0.93016 0.92472 0.90131 0.92635 0.91090 0.92478 0.89329 0.88167 0.79972 0.81635 0.89999 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.97 55.49 0.78 -27.78 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.25 -6.65 10.36 -15.06 -0.16 -6.81 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 9 N -0.74 -16.89 4.93 -53.46 -0.26 -17.16 16 10 C 0.16 2.97 2.29 -67.97 -0.16 2.81 16 11 H 0.08 1.38 3.29 -51.93 -0.17 1.21 16 12 C -0.13 -2.04 5.21 -26.29 -0.14 -2.18 16 13 C -0.11 -1.54 5.40 -26.51 -0.14 -1.69 16 14 C -0.13 -1.62 5.49 -26.60 -0.15 -1.77 16 15 C -0.12 -1.32 4.58 -26.65 -0.12 -1.45 16 16 C 0.10 1.29 4.88 -4.13 -0.02 1.27 16 17 N -0.57 -8.66 1.69 -175.71 -0.30 -8.96 16 18 C 0.56 8.76 6.13 -12.31 -0.08 8.68 16 19 O -0.53 -9.91 14.76 5.33 0.08 -9.83 16 20 C 0.04 0.53 5.72 -82.96 -0.47 0.06 16 21 N -0.39 -3.78 4.55 -9.70 -0.04 -3.83 16 22 C 0.06 0.41 11.17 -17.47 -0.20 0.21 16 23 C 0.10 0.70 7.35 -39.12 -0.29 0.41 16 24 F -0.12 -0.81 17.28 2.25 0.04 -0.77 16 25 C -0.16 -1.23 10.14 -39.18 -0.40 -1.62 16 26 C 0.14 1.55 7.31 -38.84 -0.28 1.26 16 27 F -0.10 -1.26 15.56 2.25 0.04 -1.22 16 28 C 0.09 1.53 5.60 -4.64 -0.03 1.51 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.95 7.85 -51.92 -0.41 0.54 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.84 5.38 -51.93 -0.28 0.56 16 35 H 0.08 1.12 5.47 -51.93 -0.28 0.83 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.65 5.35 -51.93 -0.28 0.37 16 39 H 0.09 1.24 6.07 -51.93 -0.32 0.92 16 40 H 0.10 1.16 5.88 -51.93 -0.31 0.85 16 41 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.08 1.56 6.73 -51.93 -0.35 1.21 16 44 H 0.08 1.54 8.08 -51.93 -0.42 1.12 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -31.83 343.17 -7.11 -38.94 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.17 Total: 7.49 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.72 Total: 0.84 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.17 Total: -57.72 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.07 Total: -1.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.83 -7.11 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088337187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.741 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds