Wall clock time and date at job start Tue Mar 31 2020 23:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.46928 * 269.99581 * 3 2 1 5 5 H 1.48496 * 109.47300 * 29.99434 * 3 2 1 6 6 H 1.48497 * 109.46981 * 149.99821 * 3 2 1 7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99966 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99647 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.48095 * 325.01233 * 10 9 7 12 12 C 1.52879 * 109.47735 * 204.99546 * 10 9 7 13 13 C 1.53971 * 109.71688 * 167.11245 * 12 10 9 14 14 C 1.52444 * 110.73016 * 315.64644 * 13 12 10 15 15 C 1.53804 * 109.41858 * 113.72703 * 14 13 12 16 16 C 1.52335 * 109.16760 * 282.12610 * 15 14 13 17 17 N 1.46966 * 109.08663 * 72.70215 * 16 15 14 18 18 C 1.34777 * 120.35239 * 68.37774 * 17 16 15 19 19 O 1.21542 * 119.99991 * 185.35388 * 18 17 16 20 20 C 1.47880 * 119.99749 * 5.35773 * 18 17 16 21 21 N 1.32845 * 119.72421 * 5.85997 * 20 18 17 22 22 C 1.31368 * 121.68958 * 180.02562 * 21 20 18 23 23 C 1.39004 * 120.93012 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.32158 * 179.97438 * 23 22 21 25 25 C 1.38711 * 119.34609 * 359.76545 * 23 22 21 26 26 C 1.38839 * 118.44723 * 0.48035 * 25 23 22 27 27 F 1.35105 * 120.48379 * 179.78229 * 26 25 23 28 28 C 1.45336 * 119.29025 * 248.65614 * 17 16 15 29 29 H 0.96995 * 119.99686 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00414 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.43253 * 47.03453 * 12 10 9 32 32 H 1.09007 * 109.43221 * 287.18589 * 12 10 9 33 33 H 1.08996 * 109.22372 * 195.32128 * 13 12 10 34 34 H 1.08998 * 109.22015 * 75.96897 * 13 12 10 35 35 H 1.08994 * 109.48007 * 353.74546 * 14 13 12 36 36 H 1.08999 * 109.48551 * 233.71334 * 14 13 12 37 37 H 1.08999 * 109.52207 * 162.21855 * 15 14 13 38 38 H 1.09004 * 109.52309 * 42.03500 * 15 14 13 39 39 H 1.08998 * 109.53358 * 312.82617 * 16 15 14 40 40 H 1.08996 * 109.53741 * 192.58709 * 16 15 14 41 41 H 1.08001 * 119.53347 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.78215 * 180.23069 * 25 23 22 43 43 H 1.09004 * 109.67666 * 162.80419 * 28 17 16 44 44 H 1.09004 * 109.67515 * 283.33834 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5646 -3.2067 0.5899 12 6 5.4981 -2.2593 0.6107 13 6 6.1469 -3.6229 0.9115 14 6 5.1440 -4.5645 1.5682 15 6 4.8455 -5.7369 0.6184 16 6 3.8798 -5.2706 -0.4635 17 7 4.5943 -4.3903 -1.3986 18 6 5.5490 -4.8888 -2.2088 19 8 6.2030 -4.1411 -2.9091 20 6 5.8007 -6.3456 -2.2458 21 7 5.0076 -7.1684 -1.5685 22 6 5.1959 -8.4685 -1.5739 23 6 6.2402 -9.0362 -2.2946 24 9 6.4229 -10.3748 -2.2910 25 6 7.0901 -8.2152 -3.0209 26 6 6.8699 -6.8447 -2.9924 27 9 7.6753 -6.0066 -3.6811 28 6 4.2647 -2.9753 -1.4358 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 5.4045 -1.6904 1.5357 32 1 6.1229 -1.7076 -0.0918 33 1 6.9943 -3.4772 1.5813 34 1 6.4987 -4.0662 -0.0201 35 1 4.2215 -4.0235 1.7789 36 1 5.5612 -4.9482 2.4993 37 1 4.3954 -6.5553 1.1803 38 1 5.7726 -6.0771 0.1572 39 1 3.0558 -4.7236 -0.0054 40 1 3.4905 -6.1348 -1.0017 41 1 4.5300 -9.1053 -1.0103 42 1 7.9065 -8.6318 -3.5921 43 1 5.0630 -2.4255 -1.9344 44 1 3.3276 -2.8308 -1.9735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088337187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:21 Heat of formation + Delta-G solvation = -58.761090 kcal Electronic energy + Delta-G solvation = -30902.684139 eV Core-core repulsion = 26492.138766 eV Total energy + Delta-G solvation = -4410.545373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.23605 -50.20945 -42.16314 -40.53029 -38.97297 -36.63903 -35.16634 -34.18321 -33.50518 -32.25758 -31.86508 -28.94630 -27.52795 -26.22141 -25.28686 -24.67288 -23.66163 -22.77697 -21.53580 -20.34239 -19.57205 -19.42545 -19.25165 -18.36226 -17.66731 -17.47745 -17.07841 -16.91951 -16.57431 -16.51404 -16.21597 -15.73682 -15.54196 -15.37364 -15.34132 -15.02498 -14.78283 -14.53615 -14.30238 -14.21148 -14.00568 -13.70462 -13.60289 -13.28204 -13.12444 -12.79403 -12.68403 -12.23332 -12.11368 -11.95463 -11.79890 -11.57708 -11.50321 -11.38388 -11.19404 -11.00914 -10.89540 -10.65146 -10.18259 -9.60878 -9.22233 -8.01344 -5.35059 -0.87436 -0.31848 1.38633 1.40792 1.44302 1.47540 1.79845 2.36546 2.48275 2.48927 2.77960 2.86167 3.29745 3.31727 3.43132 3.57008 3.76096 3.83494 4.01318 4.08776 4.19032 4.24028 4.30905 4.34456 4.37311 4.54158 4.62936 4.64252 4.74348 4.83799 4.86233 4.95264 5.01604 5.19803 5.22454 5.25109 5.33196 5.40071 5.41349 5.50806 5.67685 5.79436 6.21266 6.24783 6.38088 6.97643 7.07677 7.82858 8.01548 9.19529 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003174 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.192393 B = 8820.772433 C = 9075.213686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.946 3.054 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.225 4.225 8 H 0.065 0.935 9 N -0.748 5.748 10 C 0.162 3.838 11 H 0.082 0.918 12 C -0.122 4.122 13 C -0.106 4.106 14 C -0.131 4.131 15 C -0.111 4.111 16 C 0.101 3.899 17 N -0.571 5.571 18 C 0.557 3.443 19 O -0.570 6.570 20 C 0.023 3.977 21 N -0.394 5.394 22 C 0.076 3.924 23 C 0.119 3.881 24 F -0.109 7.109 25 C -0.145 4.145 26 C 0.124 3.876 27 F -0.116 7.116 28 C 0.100 3.900 29 H 0.257 0.743 30 H 0.364 0.636 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.222 0.778 42 H 0.192 0.808 43 H 0.067 0.933 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.112 -23.746 -0.397 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.250 4.250 3 Si 0.774 3.226 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.356 4.356 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.054 3.946 11 H 0.099 0.901 12 C -0.160 4.160 13 C -0.144 4.144 14 C -0.168 4.168 15 C -0.149 4.149 16 C -0.021 4.021 17 N -0.301 5.301 18 C 0.345 3.655 19 O -0.450 6.450 20 C -0.114 4.114 21 N -0.104 5.104 22 C -0.087 4.087 23 C 0.097 3.903 24 F -0.087 7.087 25 C -0.172 4.172 26 C 0.101 3.899 27 F -0.094 7.094 28 C -0.026 4.026 29 H 0.066 0.934 30 H 0.197 0.803 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.238 0.762 42 H 0.209 0.791 43 H 0.085 0.915 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.570 -23.007 -0.291 27.782 hybrid contribution 0.901 1.314 -1.047 1.906 sum 16.471 -21.693 -1.338 27.271 Atomic orbital electron populations 1.69861 1.06911 1.26514 1.59758 1.25391 0.95978 1.00831 1.02827 0.85536 0.78831 0.80402 0.77787 1.21140 1.22279 1.17710 1.19012 0.82141 0.93571 1.40855 0.91686 1.42810 1.02720 1.03664 1.89817 1.20996 0.92637 0.88102 0.92891 0.90076 1.21991 0.95111 0.98406 1.00469 1.21591 0.98444 0.94317 1.00073 1.21909 0.99399 0.96530 0.98981 1.21984 0.99355 0.97762 0.95754 1.22267 0.94807 0.94099 0.90889 1.47694 1.36029 1.09030 1.37303 1.17976 0.80423 0.86778 0.80372 1.90814 1.49763 1.59816 1.44595 1.21101 0.95489 0.94428 1.00347 1.68347 1.23259 1.04178 1.14601 1.23861 0.96293 0.90899 0.97668 1.18746 0.95995 0.78419 0.97188 1.91625 1.94440 1.28242 1.94412 1.21853 1.03160 0.90015 1.02153 1.18508 0.89837 0.88366 0.93179 1.91619 1.70667 1.70897 1.76224 1.22090 0.99566 0.80525 1.00415 0.93420 0.80325 0.91632 0.93010 0.91313 0.93577 0.91905 0.90377 0.88143 0.92244 0.91084 0.86577 0.76173 0.79108 0.91496 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.07 13.97 21.65 0.30 -61.77 16 2 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 3 Si 0.95 45.76 27.74 68.60 1.90 47.66 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 7 C -0.22 -12.45 10.36 84.03 0.87 -11.58 16 8 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 9 N -0.75 -34.48 4.93 -323.05 -1.59 -36.07 16 10 C 0.16 6.04 2.29 44.97 0.10 6.15 16 11 H 0.08 2.99 3.29 -2.39 -0.01 2.98 16 12 C -0.12 -3.86 5.21 30.88 0.16 -3.70 16 13 C -0.11 -2.75 5.40 30.74 0.17 -2.59 16 14 C -0.13 -2.92 5.49 30.68 0.17 -2.75 16 15 C -0.11 -2.14 4.58 30.65 0.14 -2.00 16 16 C 0.10 2.47 4.88 86.07 0.42 2.89 16 17 N -0.57 -17.68 1.69 -828.10 -1.40 -19.09 16 18 C 0.56 17.74 6.13 86.80 0.53 18.27 16 19 O -0.57 -22.39 14.76 -3.85 -0.06 -22.45 16 20 C 0.02 0.54 5.72 41.88 0.24 0.78 16 21 N -0.39 -6.63 4.55 -184.60 -0.84 -7.47 16 22 C 0.08 0.72 11.17 84.95 0.95 1.67 16 23 C 0.12 1.15 7.35 22.57 0.17 1.32 16 24 F -0.11 -0.97 17.28 44.97 0.78 -0.20 16 25 C -0.15 -1.78 10.14 22.53 0.23 -1.55 16 26 C 0.12 2.58 7.31 22.75 0.17 2.75 16 27 F -0.12 -3.08 15.56 44.97 0.70 -2.38 16 28 C 0.10 3.76 5.60 86.61 0.49 4.24 16 29 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.36 16.49 5.66 -92.71 -0.52 15.97 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.70 7.85 -2.38 -0.02 1.68 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.32 5.38 -2.39 -0.01 1.30 16 35 H 0.06 1.65 5.47 -2.39 -0.01 1.64 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.18 5.35 -2.38 -0.01 1.17 16 39 H 0.07 1.99 6.07 -2.39 -0.01 1.98 16 40 H 0.12 2.49 5.88 -2.39 -0.01 2.47 16 41 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 43 H 0.07 2.70 6.73 -2.38 -0.02 2.69 16 44 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 Total: -1.00 -72.98 343.17 5.54 -67.44 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.49 Total: 23.39 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.26 Total: 10.95 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -3.53 Total: -124.40 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 1.48 Total: -2.58 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -72.98 5.54 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088337187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.675 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds