Wall clock time and date at job start Tue Mar 31 2020 22:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81398 * 103.00058 * 2 1 4 4 C 1.53001 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47013 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00267 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99782 * 179.97438 * 5 4 3 8 8 C 1.47021 * 125.64988 * 0.04723 * 7 5 4 9 9 C 1.54319 * 107.27550 * 181.02069 * 8 7 5 10 10 C 1.55164 * 102.94174 * 22.19087 * 9 8 7 11 11 H 1.08998 * 111.03428 * 82.58167 * 10 9 8 12 12 N 1.46492 * 111.00696 * 206.42755 * 10 9 8 13 13 C 1.35317 * 125.86956 * 27.20835 * 12 10 9 14 14 C 1.35349 * 106.17446 * 179.97438 * 13 12 10 15 15 C 1.50703 * 126.75129 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47470 * 95.04643 * 15 14 13 17 17 C 1.36932 * 120.00287 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99540 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00200 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00261 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99873 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47057 * 90.00033 * 21 19 17 23 23 H 1.48502 * 109.47292 * 209.99818 * 21 19 17 24 24 H 1.48496 * 109.47214 * 330.00224 * 21 19 17 25 25 N 1.33777 * 106.49799 * 0.02562 * 14 13 12 26 26 N 1.28634 * 108.88349 * 359.97438 * 25 14 13 27 27 C 1.47423 * 125.64795 * 180.02562 * 7 5 4 28 28 H 1.09005 * 109.47198 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.47284 * 60.00107 * 1 2 3 30 30 H 1.09005 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47764 * 59.99634 * 3 2 1 32 32 H 1.09002 * 109.47056 * 299.99805 * 3 2 1 33 33 H 1.09001 * 109.46979 * 59.99923 * 4 3 2 34 34 H 1.08998 * 109.47348 * 299.99741 * 4 3 2 35 35 H 1.08999 * 109.88111 * 300.43764 * 8 7 5 36 36 H 1.08999 * 109.88555 * 61.59948 * 8 7 5 37 37 H 1.08999 * 110.72403 * 263.83290 * 9 8 7 38 38 H 1.08995 * 110.72599 * 140.55478 * 9 8 7 39 39 H 1.07994 * 126.91360 * 359.93700 * 13 12 10 40 40 H 1.09001 * 109.47240 * 215.04786 * 15 14 13 41 41 H 1.09006 * 109.46803 * 335.04653 * 15 14 13 42 42 H 0.97002 * 119.99348 * 0.02562 * 16 15 14 43 43 H 0.96997 * 120.00199 * 180.02562 * 20 19 17 44 44 H 1.08998 * 110.36934 * 37.07066 * 27 7 5 45 45 H 1.09001 * 110.36928 * 274.74454 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0813 3.4084 -0.0013 6 8 3.1943 4.2355 -0.0008 7 7 5.3701 3.8024 -0.0014 8 6 6.5389 2.9104 -0.0019 9 6 7.7970 3.8036 0.0244 10 6 7.2636 5.1381 0.6093 11 1 7.2196 5.0983 1.6977 12 7 8.0772 6.2706 0.1605 13 6 8.7866 6.3305 -0.9903 14 6 9.3820 7.5460 -1.0034 15 6 10.2841 8.0967 -2.0777 16 7 9.4957 8.9066 -3.0097 17 6 10.1059 9.5134 -4.0748 18 1 11.1684 9.3944 -4.2280 19 6 9.3590 10.2812 -4.9576 20 7 9.9454 10.8641 -5.9817 21 14 7.5215 10.4875 -4.6920 22 1 7.2752 11.6771 -3.8380 23 1 6.8494 10.6719 -6.0034 24 1 6.9791 9.2775 -4.0236 25 7 9.0131 8.1619 0.1254 26 7 8.2400 7.3798 0.7929 27 6 5.8415 5.1992 -0.0015 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8031 2.2372 0.8899 32 1 1.8031 2.2371 -0.8900 33 1 4.1608 1.4704 -0.8909 34 1 4.1617 1.4703 0.8891 35 1 6.5186 2.2724 0.8816 36 1 6.5376 2.2983 -0.9038 37 1 8.1857 3.9523 -0.9830 38 1 8.5604 3.3756 0.6741 39 1 8.8629 5.5627 -1.7459 40 1 11.0563 8.7161 -1.6214 41 1 10.7510 7.2728 -2.6175 42 1 8.5415 9.0137 -2.8717 43 1 9.4236 11.4010 -6.5983 44 1 5.1904 5.8194 0.6145 45 1 5.8827 5.5857 -1.0198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098611674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:53 Heat of formation + Delta-G solvation = 89.547484 kcal Electronic energy + Delta-G solvation = -26250.993798 eV Core-core repulsion = 22433.012705 eV Total energy + Delta-G solvation = -3817.981093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24101 -40.69064 -38.34208 -35.30667 -34.26917 -33.46714 -32.04752 -31.10587 -30.38693 -29.60565 -29.37357 -26.31303 -25.87707 -23.67853 -23.30498 -22.42250 -21.03227 -20.75717 -19.84584 -18.26281 -17.94733 -17.38766 -16.66259 -16.49217 -16.28701 -15.96010 -15.40011 -14.87684 -14.71981 -14.46020 -14.33133 -14.13763 -14.05785 -13.86125 -13.72382 -13.24015 -13.08433 -13.03051 -12.79326 -12.60321 -12.48817 -12.36643 -12.09022 -12.04565 -11.74249 -11.49400 -11.13133 -10.87709 -10.61387 -10.58980 -10.46221 -10.17405 -10.02576 -9.59408 -9.34618 -9.07149 -8.90309 -8.25207 -7.24124 -5.76133 -3.12029 1.02267 1.56907 1.90922 1.99785 2.05138 2.53706 2.70677 3.40173 3.45294 3.48653 3.49562 3.70658 4.04509 4.06399 4.19870 4.24883 4.30786 4.45622 4.58966 4.60912 4.61415 4.62331 4.78009 4.90152 4.93314 5.03462 5.07285 5.11505 5.17912 5.19082 5.25958 5.26552 5.34730 5.49914 5.54502 5.67307 5.71584 6.20806 6.52105 6.55970 6.64557 6.78994 7.53110 7.97933 8.42482 8.63563 9.20340 9.93019 10.12741 11.41854 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.002132 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.324531 B =13127.853291 C =14357.989029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.265 6.265 3 C -0.072 4.072 4 C -0.118 4.118 5 C 0.537 3.463 6 O -0.531 6.531 7 N -0.619 5.619 8 C 0.102 3.898 9 C -0.142 4.142 10 C 0.135 3.865 11 H 0.130 0.870 12 N -0.293 5.293 13 C -0.043 4.043 14 C -0.008 4.008 15 C 0.237 3.763 16 N -0.750 5.750 17 C -0.244 4.244 18 H 0.094 0.906 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.251 5.251 26 N -0.090 5.090 27 C 0.099 3.901 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.190 0.810 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.096 0.904 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 -28.183 15.915 34.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.040 6.040 3 C -0.220 4.220 4 C -0.159 4.159 5 C 0.325 3.675 6 O -0.406 6.406 7 N -0.355 5.355 8 C -0.021 4.021 9 C -0.180 4.180 10 C 0.031 3.969 11 H 0.147 0.853 12 N -0.087 5.087 13 C -0.193 4.193 14 C -0.146 4.146 15 C 0.109 3.891 16 N -0.396 5.396 17 C -0.374 4.374 18 H 0.111 0.889 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.118 5.118 26 N -0.069 5.069 27 C -0.025 4.025 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.207 0.793 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.348 -27.766 17.025 35.199 hybrid contribution -1.975 0.530 -0.871 2.223 sum -15.323 -27.236 16.154 35.179 Atomic orbital electron populations 1.23385 0.93336 1.06682 1.05300 1.86769 1.08359 1.10664 1.98168 1.23115 0.97924 0.94191 1.06786 1.21328 0.95661 0.92997 1.05948 1.20211 0.80471 0.91091 0.75770 1.90770 1.45807 1.54820 1.49237 1.48317 1.05499 1.07208 1.74455 1.22116 0.83512 0.93154 1.03365 1.23134 0.97978 0.92827 1.04101 1.22609 0.89655 0.82962 1.01655 0.85252 1.47054 1.33162 1.13360 1.15138 1.23348 1.00864 1.02337 0.92734 1.22550 1.03053 0.92116 0.96863 1.18928 0.90637 0.94066 0.85497 1.42652 1.06784 1.60346 1.29794 1.19032 0.94938 1.23206 1.00207 0.88852 1.24627 0.97381 0.99588 0.97231 1.69696 1.34943 1.37115 1.16235 0.86565 0.87071 0.78027 0.76930 1.20927 1.21702 1.20635 1.75136 1.08852 1.22884 1.04951 1.78324 1.16693 0.90907 1.20950 1.22510 0.93237 0.84053 1.02700 0.90270 0.90225 0.87866 0.89076 0.89041 0.87598 0.87638 0.90008 0.89789 0.88416 0.87817 0.79287 0.93379 0.93577 0.80496 0.93015 0.88593 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.76 101.05 1.09 0.56 16 2 S -0.27 -1.72 22.38 -107.50 -2.41 -4.12 16 3 C -0.07 -0.47 5.23 37.16 0.19 -0.27 16 4 C -0.12 -0.64 4.90 -27.88 -0.14 -0.78 16 5 C 0.54 4.64 7.85 -10.98 -0.09 4.56 16 6 O -0.53 -6.90 16.24 5.56 0.09 -6.81 16 7 N -0.62 -4.41 3.33 -170.54 -0.57 -4.97 16 8 C 0.10 0.35 6.49 -3.07 -0.02 0.33 16 9 C -0.14 -0.59 6.31 -24.89 -0.16 -0.75 16 10 C 0.14 1.03 4.12 -65.79 -0.27 0.76 16 11 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 12 N -0.29 -3.60 3.40 -52.69 -0.18 -3.77 16 13 C -0.04 -0.56 10.61 -17.04 -0.18 -0.74 16 14 C -0.01 -0.14 6.62 -82.77 -0.55 -0.69 16 15 C 0.24 4.66 6.82 -5.19 -0.04 4.63 16 16 N -0.75 -18.30 5.40 -61.08 -0.33 -18.63 16 17 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 18 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 21 Si 0.88 22.92 27.74 -169.99 -4.71 18.21 16 22 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 25 N -0.25 -4.74 12.41 33.29 0.41 -4.33 16 26 N -0.09 -1.47 13.16 60.35 0.79 -0.67 16 27 C 0.10 0.90 6.60 -2.54 -0.02 0.88 16 28 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.09 0.64 8.10 -51.92 -0.42 0.22 16 32 H 0.09 0.68 8.10 -51.92 -0.42 0.26 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.10 0.42 6.24 -51.93 -0.32 0.10 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.19 1.81 6.81 -52.49 -0.36 1.45 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.36 8.98 5.52 -40.82 -0.23 8.76 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.10 1.01 8.04 -51.93 -0.42 0.59 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -37.52 387.89 -7.53 -45.06 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.83 Total: 1.36 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.42 Total: 1.51 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.91 Total: -61.03 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: 0.09 Total: -6.81 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.21 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.41 Total: -4.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.52 -7.53 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098611674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.603 kcal (2) G-P(sol) polarization free energy of solvation -37.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds