Wall clock time and date at job start Tue Mar 31 2020 22:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81398 * 103.00058 * 2 1 4 4 C 1.53001 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47013 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00267 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99782 * 179.97438 * 5 4 3 8 8 C 1.47021 * 125.64988 * 0.04723 * 7 5 4 9 9 C 1.54319 * 107.27550 * 181.02069 * 8 7 5 10 10 C 1.55164 * 102.94174 * 22.19087 * 9 8 7 11 11 H 1.08998 * 111.03428 * 82.58167 * 10 9 8 12 12 N 1.46492 * 111.00696 * 206.42755 * 10 9 8 13 13 C 1.35317 * 125.86956 * 27.20835 * 12 10 9 14 14 C 1.35349 * 106.17446 * 179.97438 * 13 12 10 15 15 C 1.50703 * 126.75129 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47470 * 95.04643 * 15 14 13 17 17 C 1.36932 * 120.00287 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99540 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00200 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00261 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99873 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47057 * 90.00033 * 21 19 17 23 23 H 1.48502 * 109.47292 * 209.99818 * 21 19 17 24 24 H 1.48496 * 109.47214 * 330.00224 * 21 19 17 25 25 N 1.33777 * 106.49799 * 0.02562 * 14 13 12 26 26 N 1.28634 * 108.88349 * 359.97438 * 25 14 13 27 27 C 1.47423 * 125.64795 * 180.02562 * 7 5 4 28 28 H 1.09005 * 109.47198 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.47284 * 60.00107 * 1 2 3 30 30 H 1.09005 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47764 * 59.99634 * 3 2 1 32 32 H 1.09002 * 109.47056 * 299.99805 * 3 2 1 33 33 H 1.09001 * 109.46979 * 59.99923 * 4 3 2 34 34 H 1.08998 * 109.47348 * 299.99741 * 4 3 2 35 35 H 1.08999 * 109.88111 * 300.43764 * 8 7 5 36 36 H 1.08999 * 109.88555 * 61.59948 * 8 7 5 37 37 H 1.08999 * 110.72403 * 263.83290 * 9 8 7 38 38 H 1.08995 * 110.72599 * 140.55478 * 9 8 7 39 39 H 1.07994 * 126.91360 * 359.93700 * 13 12 10 40 40 H 1.09001 * 109.47240 * 215.04786 * 15 14 13 41 41 H 1.09006 * 109.46803 * 335.04653 * 15 14 13 42 42 H 0.97002 * 119.99348 * 0.02562 * 16 15 14 43 43 H 0.96997 * 120.00199 * 180.02562 * 20 19 17 44 44 H 1.08998 * 110.36934 * 37.07066 * 27 7 5 45 45 H 1.09001 * 110.36928 * 274.74454 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0813 3.4084 -0.0013 6 8 3.1943 4.2355 -0.0008 7 7 5.3701 3.8024 -0.0014 8 6 6.5389 2.9104 -0.0019 9 6 7.7970 3.8036 0.0244 10 6 7.2636 5.1381 0.6093 11 1 7.2196 5.0983 1.6977 12 7 8.0772 6.2706 0.1605 13 6 8.7866 6.3305 -0.9903 14 6 9.3820 7.5460 -1.0034 15 6 10.2841 8.0967 -2.0777 16 7 9.4957 8.9066 -3.0097 17 6 10.1059 9.5134 -4.0748 18 1 11.1684 9.3944 -4.2280 19 6 9.3590 10.2812 -4.9576 20 7 9.9454 10.8641 -5.9817 21 14 7.5215 10.4875 -4.6920 22 1 7.2752 11.6771 -3.8380 23 1 6.8494 10.6719 -6.0034 24 1 6.9791 9.2775 -4.0236 25 7 9.0131 8.1619 0.1254 26 7 8.2400 7.3798 0.7929 27 6 5.8415 5.1992 -0.0015 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8031 2.2372 0.8899 32 1 1.8031 2.2371 -0.8900 33 1 4.1608 1.4704 -0.8909 34 1 4.1617 1.4703 0.8891 35 1 6.5186 2.2724 0.8816 36 1 6.5376 2.2983 -0.9038 37 1 8.1857 3.9523 -0.9830 38 1 8.5604 3.3756 0.6741 39 1 8.8629 5.5627 -1.7459 40 1 11.0563 8.7161 -1.6214 41 1 10.7510 7.2728 -2.6175 42 1 8.5415 9.0137 -2.8717 43 1 9.4236 11.4010 -6.5983 44 1 5.1904 5.8194 0.6145 45 1 5.8827 5.5857 -1.0198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098611674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:52 Heat of formation + Delta-G solvation = 62.287845 kcal Electronic energy + Delta-G solvation = -26252.175864 eV Core-core repulsion = 22433.012705 eV Total energy + Delta-G solvation = -3819.163160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.37241 -41.31269 -39.01447 -37.01455 -35.33277 -34.08113 -33.80740 -32.12148 -31.69368 -30.16802 -29.80208 -27.93898 -26.55541 -24.45779 -24.36624 -23.82506 -22.29091 -21.66902 -20.39445 -19.93905 -18.78893 -18.30797 -17.50749 -17.17534 -16.89093 -16.76948 -16.52083 -16.17581 -15.94719 -15.62047 -15.16563 -14.98258 -14.76786 -14.56853 -14.38635 -14.30140 -14.27054 -13.93505 -13.88268 -13.52895 -13.36223 -13.10204 -12.95113 -12.92484 -12.83924 -12.61917 -12.48210 -12.15881 -12.02509 -11.84921 -11.82309 -11.24395 -11.08720 -11.03643 -11.00510 -10.30642 -9.90368 -9.32807 -8.73028 -8.03933 -5.36711 0.48265 0.58510 1.12275 1.32122 1.37424 1.38728 1.42882 1.43932 1.55919 1.92709 2.45047 2.94783 3.16235 3.26839 3.35093 3.54890 3.63240 3.75770 3.80325 3.84056 3.85501 3.91670 4.06996 4.21822 4.27916 4.28869 4.32191 4.42915 4.48794 4.54293 4.63454 4.67420 4.80564 4.81715 4.84495 4.86900 4.96767 5.02028 5.08719 5.15225 5.60342 5.74839 6.19903 6.24843 6.92077 7.04392 7.44217 7.79746 7.98642 9.17125 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.002132 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.324531 B =13127.853291 C =14357.989029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.282 6.282 3 C -0.068 4.068 4 C -0.107 4.107 5 C 0.532 3.468 6 O -0.586 6.586 7 N -0.614 5.614 8 C 0.098 3.902 9 C -0.132 4.132 10 C 0.130 3.870 11 H 0.144 0.856 12 N -0.277 5.277 13 C -0.012 4.012 14 C -0.041 4.041 15 C 0.238 3.762 16 N -0.754 5.754 17 C -0.228 4.228 18 H 0.071 0.929 19 C -0.056 4.056 20 N -0.978 5.978 21 Si 0.946 3.054 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.261 1.261 25 N -0.294 5.294 26 N -0.110 5.110 27 C 0.100 3.900 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.232 0.768 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.361 0.639 43 H 0.258 0.742 44 H 0.071 0.929 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -32.008 16.941 38.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.056 6.056 3 C -0.216 4.216 4 C -0.147 4.147 5 C 0.321 3.679 6 O -0.466 6.466 7 N -0.349 5.349 8 C -0.023 4.023 9 C -0.170 4.170 10 C 0.028 3.972 11 H 0.161 0.839 12 N -0.071 5.071 13 C -0.163 4.163 14 C -0.179 4.179 15 C 0.111 3.889 16 N -0.400 5.400 17 C -0.359 4.359 18 H 0.089 0.911 19 C -0.248 4.248 20 N -0.628 5.628 21 Si 0.775 3.225 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.186 1.186 25 N -0.161 5.161 26 N -0.088 5.088 27 C -0.026 4.026 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.248 0.752 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.193 0.807 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.896 -31.658 18.117 39.033 hybrid contribution -1.776 1.608 -1.113 2.642 sum -15.672 -30.050 17.004 37.917 Atomic orbital electron populations 1.23467 0.91687 1.07632 1.05694 1.86746 1.10346 1.10349 1.98176 1.23036 0.98936 0.94064 1.05588 1.21340 0.94840 0.90596 1.07949 1.20827 0.80289 0.92033 0.74703 1.90748 1.47536 1.56414 1.51889 1.48381 1.06226 1.06918 1.73357 1.22471 0.81212 0.92668 1.05979 1.23250 0.98872 0.90212 1.04670 1.23026 0.88478 0.83098 1.02644 0.83864 1.47374 1.32136 1.13204 1.14362 1.23787 0.98244 1.01409 0.92881 1.22280 1.04960 0.94027 0.96660 1.18951 0.90463 0.93932 0.85535 1.42707 1.06984 1.60703 1.29559 1.19065 0.94080 1.22082 1.00664 0.91129 1.25330 1.01725 1.00259 0.97480 1.69844 1.36608 1.38762 1.17635 0.85545 0.82019 0.78267 0.76679 1.21495 1.21655 1.18646 1.75070 1.10323 1.24652 1.06088 1.78231 1.16940 0.92121 1.21524 1.22310 0.93820 0.85226 1.01208 0.89794 0.89986 0.86620 0.90120 0.90501 0.85656 0.85205 0.87051 0.87580 0.87905 0.85103 0.75196 0.94684 0.91017 0.80676 0.93272 0.91036 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.76 113.37 1.22 0.35 16 2 S -0.28 -3.16 22.38 -56.49 -1.26 -4.43 16 3 C -0.07 -0.81 5.23 71.98 0.38 -0.44 16 4 C -0.11 -0.88 4.90 29.85 0.15 -0.73 16 5 C 0.53 8.41 7.85 87.66 0.69 9.09 16 6 O -0.59 -15.47 16.24 -3.02 -0.05 -15.52 16 7 N -0.61 -7.15 3.33 -811.85 -2.70 -9.85 16 8 C 0.10 0.18 6.49 86.73 0.56 0.74 16 9 C -0.13 -0.43 6.31 31.78 0.20 -0.23 16 10 C 0.13 1.59 4.12 46.38 0.19 1.79 16 11 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 12 N -0.28 -6.14 3.40 -320.62 -1.09 -7.23 16 13 C -0.01 -0.27 10.61 83.49 0.89 0.61 16 14 C -0.04 -1.37 6.62 41.60 0.28 -1.09 16 15 C 0.24 9.15 6.82 85.63 0.58 9.73 16 16 N -0.75 -36.32 5.40 -347.17 -1.87 -38.20 16 17 C -0.23 -13.07 10.47 84.03 0.88 -12.19 16 18 H 0.07 4.30 8.06 -2.91 -0.02 4.28 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.98 -62.92 13.97 21.65 0.30 -62.62 16 21 Si 0.95 47.66 27.74 68.60 1.90 49.57 16 22 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 23 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 24 H -0.26 -12.19 6.52 99.48 0.65 -11.54 16 25 N -0.29 -11.04 12.41 -48.60 -0.60 -11.64 16 26 N -0.11 -3.47 13.16 37.02 0.49 -2.98 16 27 C 0.10 1.66 6.60 86.85 0.57 2.23 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 32 H 0.08 1.13 8.10 -2.39 -0.02 1.12 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.10 0.29 6.24 -2.39 -0.01 0.28 16 38 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.23 3.23 6.81 -2.91 -0.02 3.21 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.36 17.48 5.52 -92.71 -0.51 16.97 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -85.74 387.89 2.59 -83.15 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.43 Total: 12.75 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 7.05 Total: 6.99 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -5.48 Total: -132.51 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.05 Total: -15.52 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.90 Total: 49.57 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.26 Total: -4.43 kcal Total: -85.74 2.59 -83.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098611674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.439 kcal (2) G-P(sol) polarization free energy of solvation -85.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds