Wall clock time and date at job start Tue Mar 31 2020 22:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46899 * 111.00346 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.35359 * 126.74886 * 94.71511 * 5 4 3 7 7 N 1.35308 * 106.17168 * 179.85439 * 6 5 4 8 8 C 1.46508 * 125.86682 * 180.18839 * 7 6 5 9 9 H 1.08997 * 110.63997 * 156.97856 * 8 7 6 10 10 C 1.55157 * 110.71718 * 280.31492 * 8 7 6 11 11 C 1.54902 * 101.58156 * 153.86378 * 10 8 7 12 12 N 1.47419 * 104.83506 * 322.98964 * 11 10 8 13 13 C 1.34780 * 125.65105 * 204.09408 * 12 11 10 14 14 O 1.21281 * 119.99742 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00139 * 0.03886 * 13 12 11 16 16 S 1.80993 * 109.47438 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00252 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99945 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00152 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00285 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00021 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47416 * 89.99688 * 21 19 17 23 23 H 1.48505 * 109.47250 * 209.99914 * 21 19 17 24 24 H 1.48498 * 109.47285 * 329.99867 * 21 19 17 25 25 C 1.47022 * 108.70373 * 24.12646 * 12 11 10 26 26 N 1.28715 * 108.26946 * 0.41228 * 7 6 5 27 27 N 1.28636 * 110.17287 * 359.74013 * 26 7 6 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 33 33 H 1.00902 * 110.99679 * 303.95419 * 3 2 1 34 34 H 1.08996 * 109.46886 * 300.00078 * 4 3 2 35 35 H 1.08999 * 109.46991 * 59.99411 * 4 3 2 36 36 H 1.07999 * 126.90872 * 359.97438 * 6 5 4 37 37 H 1.09007 * 111.00503 * 271.94033 * 10 8 7 38 38 H 1.09002 * 111.00723 * 35.78591 * 10 8 7 39 39 H 1.09004 * 110.36785 * 204.14664 * 11 10 8 40 40 H 1.08999 * 110.46233 * 81.87803 * 11 10 8 41 41 H 1.08997 * 109.47405 * 300.00414 * 15 13 12 42 42 H 1.09008 * 109.47106 * 59.99958 * 15 13 12 43 43 H 0.96993 * 120.00237 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.88665 * 239.52676 * 25 12 11 45 45 H 1.09004 * 110.01243 * 118.42924 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.2862 3.6016 1.0806 7 7 4.6426 4.8175 0.6058 8 6 5.0865 5.9574 1.4120 9 1 5.6802 6.6455 0.8102 10 6 3.8731 6.6852 2.0486 11 6 4.5179 7.3262 3.3027 12 7 5.4967 6.3301 3.7748 13 6 5.9587 6.2192 5.0361 14 8 6.7669 5.3581 5.3124 15 6 5.4708 7.1649 6.1031 16 16 6.2692 6.7628 7.6769 17 6 5.5383 7.9867 8.7124 18 1 4.8265 8.6871 8.3010 19 6 5.8763 8.0499 10.0571 20 7 5.3299 8.9639 10.8309 21 14 7.1068 6.8380 10.7689 22 1 8.4771 7.3985 10.6534 23 1 6.7906 6.5940 12.1992 24 1 7.0309 5.5580 10.0198 25 6 5.8861 5.4780 2.6418 26 7 4.5200 4.8021 -0.6754 27 7 4.1101 3.6478 -1.0680 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6442 1.9013 -0.7814 34 1 3.8647 0.9204 0.8908 35 1 3.8654 0.9201 -0.8891 36 1 4.2728 3.2870 2.1136 37 1 3.4797 7.4490 1.3778 38 1 3.0948 5.9754 2.3290 39 1 3.7623 7.5075 4.0671 40 1 5.0207 8.2567 3.0392 41 1 5.7171 8.1887 5.8215 42 1 4.3903 7.0672 6.2089 43 1 5.5664 9.0084 11.7705 44 1 5.6433 4.4379 2.8594 45 1 6.9547 5.5768 2.4506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098619197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:50 Heat of formation + Delta-G solvation = 72.345342 kcal Electronic energy + Delta-G solvation = -26105.502251 eV Core-core repulsion = 22286.775217 eV Total energy + Delta-G solvation = -3818.727034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.64132 -40.17630 -37.83781 -37.03973 -34.48507 -32.59112 -32.50380 -31.29592 -30.19667 -29.92075 -28.45663 -25.81868 -25.68039 -24.34596 -23.17327 -22.46027 -21.68995 -21.00474 -19.74826 -18.09353 -17.73091 -16.86656 -16.60562 -16.38230 -16.14000 -15.42941 -15.34893 -15.29267 -15.00693 -14.67757 -14.48762 -14.06958 -13.87616 -13.54743 -13.36956 -13.18014 -12.92805 -12.78711 -12.54800 -12.40393 -12.30882 -12.11404 -12.03477 -11.77637 -11.58606 -11.56804 -11.33431 -11.14063 -11.06545 -10.70686 -10.36464 -9.94034 -9.75321 -9.57316 -9.06950 -8.91653 -8.85665 -8.59402 -7.01097 -6.35169 -4.08301 1.25064 1.77165 2.15046 2.53577 2.72145 3.04212 3.28106 3.44806 3.49425 3.56268 3.77681 3.83229 4.09294 4.23381 4.26767 4.43446 4.44956 4.53341 4.66389 4.72193 4.73917 4.85274 4.97209 5.03352 5.03773 5.07305 5.14056 5.16098 5.21901 5.25046 5.31266 5.42142 5.44425 5.56280 5.58607 5.63989 5.76801 5.80329 5.87108 5.96093 6.24680 6.53255 6.92492 7.23840 7.87596 8.18073 8.19530 8.34839 9.10621 10.73883 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.002103 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.431136 B =13311.230971 C =14223.092116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.688 5.688 4 C 0.147 3.853 5 C -0.022 4.022 6 C -0.023 4.023 7 N -0.282 5.282 8 C 0.131 3.869 9 H 0.134 0.866 10 C -0.139 4.139 11 C 0.101 3.899 12 N -0.625 5.625 13 C 0.551 3.449 14 O -0.511 6.511 15 C -0.118 4.118 16 S -0.140 6.140 17 C -0.523 4.523 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.878 5.878 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.235 1.235 25 C 0.103 3.897 26 N -0.081 5.081 27 N -0.265 5.265 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.346 0.654 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.191 0.809 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 -11.122 -23.516 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.320 5.320 4 C 0.016 3.984 5 C -0.160 4.160 6 C -0.175 4.175 7 N -0.075 5.075 8 C 0.028 3.972 9 H 0.152 0.848 10 C -0.178 4.178 11 C -0.022 4.022 12 N -0.363 5.363 13 C 0.339 3.661 14 O -0.384 6.384 15 C -0.269 4.269 16 S 0.086 5.914 17 C -0.670 4.670 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.515 5.515 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.022 4.022 26 N -0.060 5.060 27 N -0.133 5.133 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.164 0.836 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.208 0.792 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.243 -11.437 -23.440 26.603 hybrid contribution -0.371 0.045 0.363 0.521 sum -5.614 -11.392 -23.077 26.341 Atomic orbital electron populations 1.21768 0.94741 1.01838 1.02556 1.21937 0.95923 0.88967 1.00724 1.60520 1.06876 1.13949 1.50641 1.20050 0.88007 0.88231 1.02083 1.21734 1.06676 0.98512 0.89111 1.23347 1.06063 0.85883 1.02191 1.47257 1.42924 1.10876 1.06440 1.22744 0.97663 0.85212 0.91582 0.84818 1.23272 0.96448 1.01019 0.97070 1.22375 0.91961 0.92114 0.95781 1.48381 1.45624 1.34425 1.07907 1.20082 0.80574 0.84791 0.80625 1.90733 1.32562 1.35201 1.79898 1.23260 1.04751 1.01151 0.97706 1.84833 1.59660 1.47007 0.99888 1.22279 1.30724 1.17794 0.96206 0.89309 1.24710 0.95569 0.95177 0.95821 1.69930 1.42152 1.32938 1.06437 0.86742 0.81936 0.83504 0.79705 1.19172 1.19864 1.15942 1.22060 0.99613 0.96274 0.84207 1.78315 1.18468 1.16787 0.92393 1.75033 1.14987 0.97141 1.26093 0.92050 0.92820 0.91685 0.90725 0.95138 0.83637 0.89099 0.93221 0.79235 0.88023 0.89156 0.88842 0.90064 0.88290 0.88297 0.91861 0.90103 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.17 37.16 0.38 -0.46 16 2 C 0.05 0.33 6.41 -3.82 -0.02 0.30 16 3 N -0.69 -5.25 6.49 -115.06 -0.75 -6.00 16 4 C 0.15 1.13 6.25 -4.98 -0.03 1.10 16 5 C -0.02 -0.22 6.76 -82.78 -0.56 -0.78 16 6 C -0.02 -0.21 10.44 -17.05 -0.18 -0.39 16 7 N -0.28 -2.63 3.35 -52.98 -0.18 -2.80 16 8 C 0.13 0.95 3.98 -66.09 -0.26 0.69 16 9 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 10 C -0.14 -0.87 6.77 -24.59 -0.17 -1.03 16 11 C 0.10 0.77 6.69 -2.54 -0.02 0.76 16 12 N -0.62 -7.10 3.33 -170.53 -0.57 -7.67 16 13 C 0.55 9.04 7.87 -10.99 -0.09 8.96 16 14 O -0.51 -10.36 16.19 5.56 0.09 -10.27 16 15 C -0.12 -2.13 5.16 36.00 0.19 -1.94 16 16 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 17 C -0.52 -14.54 10.04 30.94 0.31 -14.23 16 18 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 19 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 20 N -0.88 -25.88 13.97 55.49 0.78 -25.10 16 21 Si 0.86 21.23 27.74 -169.99 -4.71 16.52 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 25 C 0.10 0.96 6.49 -3.06 -0.02 0.94 16 26 N -0.08 -0.95 13.17 60.35 0.79 -0.15 16 27 N -0.27 -3.20 12.41 33.29 0.41 -2.79 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.35 2.73 8.72 -39.29 -0.34 2.39 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.19 1.38 7.07 -52.49 -0.37 1.01 16 37 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.71 7.48 -51.93 -0.39 0.32 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.10 1.64 7.85 -51.91 -0.41 1.23 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 0.78 6.03 -51.93 -0.31 0.47 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -34.64 387.98 -7.74 -42.38 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.90 Total: -1.11 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.57 Total: -3.45 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.49 Total: -44.51 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.52 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.64 -7.74 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098619197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.728 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds