Wall clock time and date at job start Tue Mar 31 2020 22:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46899 * 111.00346 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.35359 * 126.74886 * 94.71511 * 5 4 3 7 7 N 1.35308 * 106.17168 * 179.85439 * 6 5 4 8 8 C 1.46508 * 125.86682 * 180.18839 * 7 6 5 9 9 H 1.08997 * 110.63997 * 156.97856 * 8 7 6 10 10 C 1.55157 * 110.71718 * 280.31492 * 8 7 6 11 11 C 1.54902 * 101.58156 * 153.86378 * 10 8 7 12 12 N 1.47419 * 104.83506 * 322.98964 * 11 10 8 13 13 C 1.34780 * 125.65105 * 204.09408 * 12 11 10 14 14 O 1.21281 * 119.99742 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00139 * 0.03886 * 13 12 11 16 16 S 1.80993 * 109.47438 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00252 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99945 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00152 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00285 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00021 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47416 * 89.99688 * 21 19 17 23 23 H 1.48505 * 109.47250 * 209.99914 * 21 19 17 24 24 H 1.48498 * 109.47285 * 329.99867 * 21 19 17 25 25 C 1.47022 * 108.70373 * 24.12646 * 12 11 10 26 26 N 1.28715 * 108.26946 * 0.41228 * 7 6 5 27 27 N 1.28636 * 110.17287 * 359.74013 * 26 7 6 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 33 33 H 1.00902 * 110.99679 * 303.95419 * 3 2 1 34 34 H 1.08996 * 109.46886 * 300.00078 * 4 3 2 35 35 H 1.08999 * 109.46991 * 59.99411 * 4 3 2 36 36 H 1.07999 * 126.90872 * 359.97438 * 6 5 4 37 37 H 1.09007 * 111.00503 * 271.94033 * 10 8 7 38 38 H 1.09002 * 111.00723 * 35.78591 * 10 8 7 39 39 H 1.09004 * 110.36785 * 204.14664 * 11 10 8 40 40 H 1.08999 * 110.46233 * 81.87803 * 11 10 8 41 41 H 1.08997 * 109.47405 * 300.00414 * 15 13 12 42 42 H 1.09008 * 109.47106 * 59.99958 * 15 13 12 43 43 H 0.96993 * 120.00237 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.88665 * 239.52676 * 25 12 11 45 45 H 1.09004 * 110.01243 * 118.42924 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.2862 3.6016 1.0806 7 7 4.6426 4.8175 0.6058 8 6 5.0865 5.9574 1.4120 9 1 5.6802 6.6455 0.8102 10 6 3.8731 6.6852 2.0486 11 6 4.5179 7.3262 3.3027 12 7 5.4967 6.3301 3.7748 13 6 5.9587 6.2192 5.0361 14 8 6.7669 5.3581 5.3124 15 6 5.4708 7.1649 6.1031 16 16 6.2692 6.7628 7.6769 17 6 5.5383 7.9867 8.7124 18 1 4.8265 8.6871 8.3010 19 6 5.8763 8.0499 10.0571 20 7 5.3299 8.9639 10.8309 21 14 7.1068 6.8380 10.7689 22 1 8.4771 7.3985 10.6534 23 1 6.7906 6.5940 12.1992 24 1 7.0309 5.5580 10.0198 25 6 5.8861 5.4780 2.6418 26 7 4.5200 4.8021 -0.6754 27 7 4.1101 3.6478 -1.0680 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6442 1.9013 -0.7814 34 1 3.8647 0.9204 0.8908 35 1 3.8654 0.9201 -0.8891 36 1 4.2728 3.2870 2.1136 37 1 3.4797 7.4490 1.3778 38 1 3.0948 5.9754 2.3290 39 1 3.7623 7.5075 4.0671 40 1 5.0207 8.2567 3.0392 41 1 5.7171 8.1887 5.8215 42 1 4.3903 7.0672 6.2089 43 1 5.5664 9.0084 11.7705 44 1 5.6433 4.4379 2.8594 45 1 6.9547 5.5768 2.4506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098619197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:49 Heat of formation + Delta-G solvation = 46.959574 kcal Electronic energy + Delta-G solvation = -26106.603061 eV Core-core repulsion = 22286.775217 eV Total energy + Delta-G solvation = -3819.827844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.38880 -41.19143 -38.86985 -37.62109 -35.32213 -34.66633 -33.26026 -32.25508 -31.12292 -30.55856 -29.43429 -27.84944 -26.42302 -25.23605 -23.89271 -22.94633 -22.42009 -21.69960 -20.86861 -19.71044 -18.70357 -18.04438 -17.37485 -17.22942 -17.08345 -16.88197 -16.54921 -16.08692 -15.85608 -15.70617 -15.53715 -15.22754 -14.91347 -14.71604 -14.29514 -14.11801 -13.88833 -13.76529 -13.42738 -13.33663 -13.18378 -13.01533 -13.00517 -12.88751 -12.69074 -12.53757 -12.42883 -12.14712 -12.08320 -11.88018 -11.83991 -11.16843 -11.15460 -11.06186 -10.53501 -10.30865 -9.88340 -9.41955 -9.00411 -8.51074 -6.22188 0.51493 0.87929 1.14158 1.31795 1.38761 1.44440 1.47434 1.54904 1.99634 2.24834 2.66460 2.87341 2.88484 3.16970 3.22419 3.46727 3.63302 3.65302 3.81712 3.83138 4.06419 4.11514 4.18042 4.25196 4.34829 4.39815 4.41550 4.45038 4.48174 4.58311 4.64222 4.66965 4.76599 4.85478 4.95028 4.99237 5.08190 5.11476 5.13238 5.34374 5.55209 5.71219 5.99999 6.12319 6.16766 6.34066 6.94021 6.95864 7.41635 8.60979 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.002103 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.431136 B =13311.230971 C =14223.092116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.694 5.694 4 C 0.149 3.851 5 C -0.027 4.027 6 C -0.024 4.024 7 N -0.276 5.276 8 C 0.137 3.863 9 H 0.153 0.847 10 C -0.126 4.126 11 C 0.094 3.906 12 N -0.613 5.613 13 C 0.554 3.446 14 O -0.558 6.558 15 C -0.103 4.103 16 S -0.176 6.176 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.261 1.261 24 H -0.236 1.236 25 C 0.102 3.898 26 N -0.102 5.102 27 N -0.293 5.293 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.342 0.658 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.207 0.793 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.078 0.922 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -11.580 -24.775 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.327 5.327 4 C 0.018 3.982 5 C -0.166 4.166 6 C -0.176 4.176 7 N -0.069 5.069 8 C 0.035 3.965 9 H 0.171 0.829 10 C -0.165 4.165 11 C -0.028 4.028 12 N -0.349 5.349 13 C 0.342 3.658 14 O -0.436 6.436 15 C -0.254 4.254 16 S 0.050 5.950 17 C -0.674 4.674 18 H 0.083 0.917 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.160 1.160 25 C -0.022 4.022 26 N -0.080 5.080 27 N -0.160 5.160 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.224 0.776 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.530 -11.869 -24.753 28.003 hybrid contribution -0.385 0.220 0.596 0.743 sum -5.915 -11.649 -24.158 27.464 Atomic orbital electron populations 1.21747 0.94377 1.02436 1.02052 1.21981 0.96201 0.88236 1.01124 1.60554 1.06790 1.14811 1.50509 1.20107 0.88132 0.87211 1.02704 1.22092 1.06394 0.99249 0.88838 1.23653 1.05428 0.85737 1.02756 1.47375 1.42184 1.11335 1.06019 1.22841 0.98144 0.84776 0.90776 0.82901 1.23243 0.95596 1.01233 0.96458 1.22718 0.91524 0.92107 0.96453 1.48198 1.45033 1.34930 1.06741 1.19644 0.80381 0.83957 0.81817 1.90718 1.34862 1.36966 1.81009 1.23210 1.04965 1.02544 0.94666 1.84765 1.60650 1.46123 1.03450 1.22432 1.30018 1.17978 0.96980 0.91683 1.25545 0.97292 0.96778 0.96387 1.70009 1.43714 1.34589 1.07040 0.85892 0.79798 0.81386 0.79459 1.18784 1.18514 1.16000 1.22145 1.00049 0.95894 0.84139 1.78259 1.19505 1.16966 0.93299 1.74999 1.15978 0.97715 1.27276 0.90921 0.92846 0.92616 0.90390 0.94595 0.84054 0.87822 0.93221 0.77639 0.85664 0.89612 0.88357 0.87779 0.86618 0.86669 0.91399 0.90335 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.17 71.98 0.73 -0.76 16 2 C 0.05 0.58 6.41 86.30 0.55 1.14 16 3 N -0.69 -9.88 6.49 -517.95 -3.36 -13.24 16 4 C 0.15 2.12 6.25 85.56 0.53 2.65 16 5 C -0.03 -0.50 6.76 41.60 0.28 -0.22 16 6 C -0.02 -0.39 10.44 83.49 0.87 0.48 16 7 N -0.28 -4.57 3.35 -321.52 -1.08 -5.65 16 8 C 0.14 1.59 3.98 46.18 0.18 1.77 16 9 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 10 C -0.13 -1.13 6.77 31.98 0.22 -0.92 16 11 C 0.09 1.11 6.69 86.85 0.58 1.69 16 12 N -0.61 -12.42 3.33 -811.82 -2.70 -15.12 16 13 C 0.55 17.33 7.87 87.66 0.69 18.02 16 14 O -0.56 -22.29 16.19 -3.03 -0.05 -22.34 16 15 C -0.10 -3.56 5.16 71.23 0.37 -3.19 16 16 S -0.18 -8.51 18.55 -56.49 -1.05 -9.56 16 17 C -0.53 -29.51 10.04 67.95 0.68 -28.83 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 19 C 0.05 2.60 5.50 84.86 0.47 3.07 16 20 N -0.92 -54.47 13.97 21.65 0.30 -54.16 16 21 Si 0.91 43.87 27.74 68.60 1.90 45.77 16 22 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.24 -11.29 6.74 99.48 0.67 -10.62 16 25 C 0.10 1.66 6.49 86.73 0.56 2.23 16 26 N -0.10 -2.24 13.17 37.02 0.49 -1.76 16 27 N -0.29 -6.83 12.41 -48.60 -0.60 -7.43 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.34 5.19 8.72 -89.69 -0.78 4.41 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.21 2.57 7.07 -2.91 -0.02 2.55 16 37 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.15 7.48 -2.39 -0.02 1.13 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.12 3.61 8.14 -2.40 -0.02 3.59 16 42 H 0.12 3.60 7.85 -2.39 -0.02 3.58 16 43 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.08 1.37 6.03 -2.39 -0.01 1.35 16 45 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -75.86 387.98 0.76 -75.10 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.18 Total: 11.25 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 6.72 Total: -2.87 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -6.95 Total: -97.36 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.77 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Total: -75.86 0.76 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098619197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.061 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds