Wall clock time and date at job start Tue Mar 31 2020 22:27:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 S 1.81400 * 109.47052 * 2 1
4 4 C 1.81404 * 102.99914 * 179.97438 * 3 2 1
5 5 C 1.52996 * 109.47183 * 180.02562 * 4 3 2
6 6 C 1.50695 * 109.47121 * 179.97438 * 5 4 3
7 7 O 1.21279 * 120.00334 * 359.97438 * 6 5 4
8 8 N 1.34784 * 120.00127 * 179.97438 * 6 5 4
9 9 C 1.47576 * 134.49542 * 180.02562 * 8 6 5
10 10 C 1.53942 * 86.11852 * 155.35966 * 9 8 6
11 11 N 1.46491 * 113.74194 * 137.95195 * 10 9 8
12 12 C 1.35317 * 125.87029 * 277.21898 * 11 10 9
13 13 C 1.35352 * 106.17693 * 180.18381 * 12 11 10
14 14 C 1.50700 * 126.75361 * 179.84844 * 13 12 11
15 15 N 1.46498 * 109.46769 * 94.71485 * 14 13 12
16 16 C 1.36943 * 119.99752 * 179.72432 * 15 14 13
17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14
18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14
19 19 N 1.31611 * 120.00081 * 180.02562 * 18 16 15
20 20 Si 1.86800 * 119.99814 * 0.02562 * 18 16 15
21 21 H 1.48501 * 109.47483 * 90.00178 * 20 18 16
22 22 H 1.48498 * 109.47011 * 210.00042 * 20 18 16
23 23 H 1.48502 * 109.47495 * 329.99664 * 20 18 16
24 24 N 1.33772 * 106.49634 * 359.59642 * 13 12 11
25 25 N 1.28636 * 108.88627 * 0.25926 * 24 13 12
26 26 C 1.47807 * 134.45239 * 359.87039 * 8 6 5
27 27 H 1.08998 * 109.46889 * 300.00293 * 1 2 3
28 28 H 1.09002 * 109.46735 * 60.00254 * 1 2 3
29 29 H 1.08999 * 109.47121 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47266 * 239.99508 * 2 1 3
31 31 H 1.09002 * 109.46735 * 119.99745 * 2 1 3
32 32 H 1.08992 * 109.47037 * 59.99467 * 4 3 2
33 33 H 1.09009 * 109.46634 * 299.99544 * 4 3 2
34 34 H 1.08996 * 109.47120 * 59.99654 * 5 4 3
35 35 H 1.08998 * 109.46940 * 299.99783 * 5 4 3
36 36 H 1.09000 * 113.76645 * 41.05224 * 9 8 6
37 37 H 1.09000 * 113.87057 * 269.67450 * 9 8 6
38 38 H 1.09000 * 113.74068 * 269.15192 * 10 9 8
39 39 H 1.08002 * 126.91295 * 0.03783 * 12 11 10
40 40 H 1.09004 * 109.47210 * 334.71843 * 14 13 12
41 41 H 1.08994 * 109.47121 * 214.71813 * 14 13 12
42 42 H 0.97001 * 120.00384 * 0.02562 * 15 14 13
43 43 H 0.97008 * 120.00329 * 179.97438 * 19 18 16
44 44 H 1.09002 * 113.77031 * 90.37650 * 26 8 6
45 45 H 1.08999 * 113.84046 * 318.91260 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 6 3.9372 1.5058 0.0008
5 6 4.6065 2.8816 0.0015
6 6 6.1038 2.7117 0.0028
7 8 6.5881 1.5998 0.0036
8 7 6.9051 3.7956 0.0031
9 6 8.3664 4.0015 0.0038
10 6 8.0687 5.3693 -0.6368
11 7 8.8772 6.4635 -0.0937
12 6 8.6165 7.1550 1.0399
13 6 9.6080 8.0683 1.1610
14 6 9.7681 9.0849 2.2618
15 7 10.6579 8.5497 3.2952
16 6 10.9572 9.3035 4.3986
17 1 10.5337 10.2909 4.5090
18 6 11.8049 8.7986 5.3750
19 7 12.0922 9.5229 6.4356
20 14 12.5379 7.0911 5.1834
21 1 13.8319 7.1860 4.4611
22 1 12.7626 6.4956 6.5251
23 1 11.6020 6.2343 4.4120
24 7 10.4211 7.8873 0.1142
25 7 9.9604 6.9293 -0.6101
26 6 6.6720 5.2551 0.0000
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 4.2406 0.9541 -0.8889
33 1 4.2398 0.9545 0.8911
34 1 4.3029 3.4328 0.8915
35 1 4.3038 3.4333 -0.8885
36 1 8.9067 3.3179 -0.6511
37 1 8.8019 4.0688 1.0007
38 1 8.0567 5.3502 -1.7266
39 1 7.7833 7.0092 1.7115
40 1 8.7938 9.3036 2.6990
41 1 10.1960 9.9998 1.8521
42 1 11.0385 7.6630 3.1958
43 1 12.6843 9.1700 7.1182
44 1 6.6065 5.6917 0.9966
45 1 5.8622 5.5706 -0.6579
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001105174154.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:25
Heat of formation + Delta-G solvation = 118.897314 kcal
Electronic energy + Delta-G solvation = -25703.163198 eV
Core-core repulsion = 21886.454809 eV
Total energy + Delta-G solvation = -3816.708389 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-43.30884 -40.90200 -38.65264 -35.24962 -33.77567 -33.44455 -33.32209 -31.95846
-30.40926 -29.75967 -27.25750 -26.34574 -25.50416 -24.15906 -23.18984 -22.48742
-21.23616 -20.81677 -19.57018 -18.35041 -17.92375 -17.41939 -16.71462 -16.58619
-16.30551 -16.13617 -15.40289 -15.13191 -14.80928 -14.57448 -14.51997 -14.16459
-13.97585 -13.80255 -13.46811 -13.31835 -13.10441 -12.93134 -12.75492 -12.67783
-12.27022 -12.20484 -11.96592 -11.89188 -11.86410 -11.62856 -11.15577 -10.90373
-10.70996 -10.51473 -10.42066 -10.19466 -10.05766 -9.60904 -9.48571 -9.11130
-8.92049 -8.22756 -7.25807 -5.77478 -3.13512 0.98823 1.52698 1.76644
1.94656 2.00670 2.46567 2.67266 3.31373 3.37995 3.43156 3.46842
3.59618 4.01346 4.10406 4.13642 4.31433 4.35056 4.40312 4.48505
4.59003 4.59729 4.65963 4.80828 4.82625 4.93422 4.97508 5.04414
5.04979 5.15572 5.17972 5.22429 5.27955 5.29231 5.50782 5.52080
5.62194 5.69530 6.17712 6.50075 6.50296 6.62495 6.88586 7.46552
7.96641 8.40997 8.60158 9.18899 9.91451 10.10953 11.40517
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.014604 B = 0.001916 C = 0.001823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1916.855111 B =14609.101203 C =15357.426391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.087 4.087
3 S -0.263 6.263
4 C -0.071 4.071
5 C -0.119 4.119
6 C 0.550 3.450
7 O -0.529 6.529
8 N -0.644 5.644
9 C 0.104 3.896
10 C 0.113 3.887
11 N -0.295 5.295
12 C -0.045 4.045
13 C -0.006 4.006
14 C 0.237 3.763
15 N -0.750 5.750
16 C -0.245 4.245
17 H 0.094 0.906
18 C 0.008 3.992
19 N -0.932 5.932
20 Si 0.884 3.116
21 H -0.283 1.283
22 H -0.291 1.291
23 H -0.280 1.280
24 N -0.250 5.250
25 N -0.088 5.088
26 C 0.099 3.901
27 H 0.065 0.935
28 H 0.065 0.935
29 H 0.072 0.928
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.090 0.910
33 H 0.090 0.910
34 H 0.107 0.893
35 H 0.106 0.894
36 H 0.102 0.898
37 H 0.099 0.901
38 H 0.147 0.853
39 H 0.191 0.809
40 H 0.047 0.953
41 H 0.049 0.951
42 H 0.362 0.638
43 H 0.260 0.740
44 H 0.106 0.894
45 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.145 -17.576 -17.628 34.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.235 4.235
3 S -0.037 6.037
4 C -0.220 4.220
5 C -0.159 4.159
6 C 0.338 3.662
7 O -0.405 6.405
8 N -0.382 5.382
9 C -0.020 4.020
10 C 0.009 3.991
11 N -0.090 5.090
12 C -0.195 4.195
13 C -0.144 4.144
14 C 0.108 3.892
15 N -0.396 5.396
16 C -0.375 4.375
17 H 0.112 0.888
18 C -0.188 4.188
19 N -0.579 5.579
20 Si 0.714 3.286
21 H -0.209 1.209
22 H -0.217 1.217
23 H -0.207 1.207
24 N -0.118 5.118
25 N -0.067 5.067
26 C -0.025 4.025
27 H 0.085 0.915
28 H 0.084 0.916
29 H 0.091 0.909
30 H 0.101 0.899
31 H 0.101 0.899
32 H 0.109 0.891
33 H 0.109 0.891
34 H 0.125 0.875
35 H 0.124 0.876
36 H 0.120 0.880
37 H 0.117 0.883
38 H 0.165 0.835
39 H 0.208 0.792
40 H 0.065 0.935
41 H 0.067 0.933
42 H 0.195 0.805
43 H 0.070 0.930
44 H 0.124 0.876
45 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -23.630 -17.385 -18.634 34.754
hybrid contribution 0.559 -2.359 0.884 2.581
sum -23.070 -19.744 -17.750 35.173
Atomic orbital electron populations
1.21525 0.91992 1.02736 1.03330 1.23314 1.00312 0.94720 1.05188
1.86850 1.05040 1.13645 1.98198 1.23069 0.92699 0.99557 1.06674
1.21308 0.90429 0.98108 1.06088 1.20173 0.88303 0.82577 0.75117
1.90763 1.76651 1.23668 1.49413 1.49680 1.07954 1.05888 1.74666
1.23619 0.82437 0.93407 1.02495 1.23689 0.90059 0.84045 1.01316
1.47140 1.18814 1.25414 1.17608 1.23376 1.05271 0.98006 0.92884
1.22563 0.92996 1.00762 0.98066 1.18936 0.95070 0.91293 0.83883
1.42652 1.56984 1.17979 1.21963 1.19035 1.23642 0.99463 0.95314
0.88843 1.24624 0.99685 0.97784 0.96684 1.69692 1.40305 1.37091
1.10855 0.86565 0.79616 0.85649 0.76741 1.20934 1.21710 1.20667
1.75146 1.23237 1.09389 1.04032 1.78327 0.97653 1.09016 1.21690
1.23737 0.96171 0.79869 1.02751 0.91545 0.91593 0.90923 0.89942
0.89896 0.89130 0.89107 0.87519 0.87617 0.87963 0.88277 0.83516
0.79227 0.93525 0.93348 0.80511 0.93003 0.87606 0.87471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.56 9.92 37.16 0.37 -0.19 16
2 C -0.09 -0.44 6.66 37.16 0.25 -0.19 16
3 S -0.26 -1.77 21.74 -107.50 -2.34 -4.11 16
4 C -0.07 -0.47 5.23 37.16 0.19 -0.27 16
5 C -0.12 -0.66 5.46 -27.89 -0.15 -0.81 16
6 C 0.55 4.66 8.06 -10.98 -0.09 4.57 16
7 O -0.53 -6.63 16.71 5.56 0.09 -6.54 16
8 N -0.64 -4.50 3.61 -178.36 -0.64 -5.14 16
9 C 0.10 0.81 8.64 -2.97 -0.03 0.79 16
10 C 0.11 0.77 5.13 -70.16 -0.36 0.41 16
11 N -0.30 -3.35 3.54 -56.32 -0.20 -3.55 16
12 C -0.05 -0.56 10.72 -17.04 -0.18 -0.74 16
13 C -0.01 -0.11 6.61 -82.78 -0.55 -0.65 16
14 C 0.24 4.53 6.82 -5.19 -0.04 4.49 16
15 N -0.75 -17.93 5.40 -61.09 -0.33 -18.26 16
16 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16
17 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16
18 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16
19 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16
20 Si 0.88 22.55 27.74 -169.99 -4.71 17.84 16
21 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16
22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16
23 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16
24 N -0.25 -4.56 12.41 33.29 0.41 -4.15 16
25 N -0.09 -1.36 13.17 60.35 0.79 -0.57 16
26 C 0.10 0.44 8.00 -2.85 -0.02 0.41 16
27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16
30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16
32 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16
33 H 0.09 0.67 8.10 -51.92 -0.42 0.25 16
34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16
37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.15 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.19 1.63 6.74 -52.49 -0.35 1.28 16
40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
42 H 0.36 8.77 5.52 -40.82 -0.23 8.54 16
43 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16
44 H 0.11 0.42 6.31 -51.93 -0.33 0.09 16
45 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16
LS Contribution 393.22 15.07 5.93 5.93
Total: -1.00 -36.95 393.22 -7.92 -44.87
By element:
Atomic # 1 Polarization: 7.98 SS G_CDS: -6.83 Total: 1.15 kcal
Atomic # 6 Polarization: 1.77 SS G_CDS: -0.86 Total: 0.91 kcal
Atomic # 7 Polarization: -60.86 SS G_CDS: 0.81 Total: -60.05 kcal
Atomic # 8 Polarization: -6.63 SS G_CDS: 0.09 Total: -6.54 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.84 kcal
Atomic # 16 Polarization: -1.77 SS G_CDS: -2.34 Total: -4.11 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -36.95 -7.92 -44.87 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001105174154.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 163.765 kcal
(2) G-P(sol) polarization free energy of solvation -36.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal
(6) G-S(sol) free energy of system = (1) + (5) 118.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds