Wall clock time and date at job start Tue Mar 31 2020 23:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48506 * 109.47254 * 269.99926 * 3 2 1 5 5 H 1.48504 * 109.47485 * 29.99898 * 3 2 1 6 6 H 1.48503 * 109.47262 * 150.00121 * 3 2 1 7 7 C 1.38807 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99996 * 359.72205 * 7 2 1 9 9 N 1.36935 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00144 * 173.52152 * 9 7 2 11 11 C 1.53002 * 109.47079 * 63.15979 * 10 9 7 12 12 N 1.46501 * 109.47074 * 54.66410 * 11 10 9 13 13 C 1.34772 * 120.00156 * 176.26094 * 12 11 10 14 14 O 1.21551 * 119.99488 * 359.97438 * 13 12 11 15 15 C 1.47878 * 120.00419 * 180.02562 * 13 12 11 16 16 N 1.32846 * 119.71654 * 359.72258 * 15 13 12 17 17 C 1.31367 * 121.68391 * 179.71082 * 16 15 13 18 18 C 1.39003 * 120.93592 * 0.57080 * 17 16 15 19 19 F 1.35100 * 120.33078 * 179.74795 * 18 17 16 20 20 C 1.38717 * 119.33766 * 359.71965 * 18 17 16 21 21 C 1.38828 * 118.45539 * 0.02562 * 20 18 17 22 22 F 1.35100 * 120.49262 * 179.97438 * 21 20 18 23 23 C 1.52994 * 109.47395 * 303.15687 * 10 9 7 24 24 C 1.53002 * 109.47245 * 300.00190 * 23 10 9 25 25 C 1.53001 * 109.47287 * 299.99819 * 24 23 10 26 26 C 1.52994 * 109.46830 * 59.99927 * 25 24 23 27 27 C 1.53001 * 109.46895 * 183.16016 * 10 9 7 28 28 H 0.97007 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99699 * 353.53102 * 9 7 2 30 30 H 1.09002 * 109.46887 * 174.65993 * 11 10 9 31 31 H 1.08999 * 109.46625 * 294.66121 * 11 10 9 32 32 H 0.96999 * 119.99896 * 356.25629 * 12 11 10 33 33 H 1.08005 * 119.53451 * 180.27162 * 17 16 15 34 34 H 1.08004 * 120.77388 * 180.02562 * 20 18 17 35 35 H 1.09007 * 109.46966 * 60.00111 * 23 10 9 36 36 H 1.08996 * 109.47701 * 179.97438 * 23 10 9 37 37 H 1.08999 * 109.47048 * 179.97438 * 24 23 10 38 38 H 1.08998 * 109.47285 * 60.00016 * 24 23 10 39 39 H 1.09003 * 109.46436 * 300.00259 * 25 24 23 40 40 H 1.08993 * 109.47035 * 179.97438 * 25 24 23 41 41 H 1.09007 * 109.46966 * 180.02562 * 26 25 24 42 42 H 1.08996 * 109.47701 * 60.00337 * 26 25 24 43 43 H 1.08998 * 109.47119 * 180.02562 * 27 10 9 44 44 H 1.08999 * 109.47147 * 300.00065 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4629 0.1415 11 6 3.8024 -3.3703 -1.0509 12 7 4.0933 -2.6561 -2.2965 13 6 3.9668 -3.2872 -3.4805 14 8 3.6118 -4.4492 -3.5149 15 6 4.2610 -2.5665 -4.7379 16 7 4.6442 -1.2953 -4.6940 17 6 4.9207 -0.6199 -5.7864 18 6 4.8103 -1.2115 -7.0394 19 9 5.0928 -0.5039 -8.1551 20 6 4.4078 -2.5357 -7.1328 21 6 4.1275 -3.2260 -5.9614 22 9 3.7318 -4.5170 -6.0045 23 6 3.6843 -3.1578 1.4357 24 6 3.9938 -2.2504 2.6281 25 6 5.4962 -1.9648 2.6752 26 6 5.9239 -1.2699 1.3810 27 6 5.6144 -2.1773 0.1886 28 1 -0.4850 0.8401 -0.0004 29 1 3.8645 -0.3676 -0.0957 30 1 4.4187 -4.2676 -0.9942 31 1 2.7493 -3.6507 -1.0302 32 1 4.3769 -1.7289 -2.2690 33 1 5.2335 0.4110 -5.7101 34 1 4.3147 -3.0184 -8.0944 35 1 2.6139 -3.3613 1.4022 36 1 4.2289 -4.0960 1.5416 37 1 3.6887 -2.7453 3.5501 38 1 3.4488 -1.3124 2.5221 39 1 6.0412 -2.9028 2.7812 40 1 5.7166 -1.3180 3.5243 41 1 6.9944 -1.0668 1.4143 42 1 5.3790 -0.3319 1.2749 43 1 6.1594 -3.1153 0.2942 44 1 5.9192 -1.6822 -0.7334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115596612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:44 Heat of formation + Delta-G solvation = -81.781618 kcal Electronic energy + Delta-G solvation = -30308.476225 eV Core-core repulsion = 25896.932607 eV Total energy + Delta-G solvation = -4411.543618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.51338 -49.19362 -40.57695 -39.35667 -38.28839 -34.60116 -33.41329 -32.75856 -31.53486 -30.98596 -30.33679 -29.14753 -26.00761 -24.68993 -23.81101 -23.47327 -22.22625 -20.96670 -20.26532 -18.67481 -18.48061 -18.34175 -17.81789 -17.73982 -16.60846 -16.23430 -15.72182 -15.63791 -15.28605 -15.05264 -14.76670 -14.70646 -14.35569 -14.25321 -13.75090 -13.62482 -13.48506 -13.39439 -13.13532 -12.73819 -12.60515 -12.23148 -12.16807 -11.95591 -11.66180 -11.26428 -10.98071 -10.83972 -10.61060 -10.50008 -10.27931 -10.25403 -10.06315 -9.92849 -9.71391 -9.64879 -9.37189 -9.27711 -8.90158 -8.53256 -7.31369 -5.77937 -3.15067 0.05976 0.48958 2.55443 3.10344 3.34133 3.36144 3.38503 3.43576 3.52952 3.68172 3.86049 4.16867 4.41414 4.56591 4.74226 5.02300 5.06896 5.14657 5.16067 5.28688 5.33635 5.36134 5.53125 5.62344 5.72117 5.87077 5.93094 6.01991 6.05085 6.06498 6.11340 6.18129 6.34118 6.43542 6.49025 6.61510 6.69140 6.71956 6.87748 6.97419 7.09242 7.15272 7.88517 7.97900 8.39999 8.46183 9.17622 9.89489 10.08613 11.40020 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003896 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.742077 B = 7185.116460 C = 8080.060747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.235 4.235 8 H 0.091 0.909 9 N -0.735 5.735 10 C 0.197 3.803 11 C 0.113 3.887 12 N -0.674 5.674 13 C 0.561 3.439 14 O -0.532 6.532 15 C 0.047 3.953 16 N -0.397 5.397 17 C 0.067 3.933 18 C 0.098 3.902 19 F -0.118 7.118 20 C -0.159 4.159 21 C 0.140 3.860 22 F -0.095 7.095 23 C -0.113 4.113 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.119 4.119 28 H 0.258 0.742 29 H 0.362 0.638 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.415 -2.997 -8.949 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.706 3.294 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.378 5.378 10 C 0.106 3.894 11 C -0.013 4.013 12 N -0.324 5.324 13 C 0.344 3.656 14 O -0.409 6.409 15 C -0.093 4.093 16 N -0.107 5.107 17 C -0.095 4.095 18 C 0.076 3.924 19 F -0.096 7.096 20 C -0.186 4.186 21 C 0.117 3.883 22 F -0.073 7.073 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.157 4.157 28 H 0.068 0.932 29 H 0.195 0.805 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.200 0.800 34 H 0.184 0.816 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.957 -3.526 -8.095 16.515 hybrid contribution 0.408 1.361 -1.238 1.885 sum 14.365 -2.165 -9.333 17.267 Atomic orbital electron populations 1.69698 1.05127 1.25656 1.57399 1.24643 0.95064 0.96920 1.02046 0.86695 0.79413 0.85540 0.77717 1.21214 1.22053 1.20087 1.18918 0.80363 0.94487 1.42727 0.89120 1.42810 1.04009 1.02451 1.88576 1.19777 0.90247 0.87475 0.91921 1.21998 1.01587 0.94479 0.83202 1.45586 1.65446 1.16542 1.04800 1.17445 0.79347 0.85987 0.82798 1.90840 1.47566 1.15858 1.86652 1.21731 1.02348 0.91196 0.93982 1.67769 1.06856 1.05411 1.30622 1.23104 0.99290 1.01655 0.85489 1.18752 0.99537 0.89906 0.84204 1.91577 1.90520 1.77567 1.49940 1.21650 1.03014 0.93970 0.99953 1.18317 0.96506 0.80637 0.92825 1.91663 1.86700 1.32081 1.96870 1.21759 1.01906 0.96881 0.94777 1.21370 0.95029 1.01467 0.96852 1.21497 0.97232 0.99533 0.96915 1.21490 0.99633 0.99453 0.94823 1.21757 0.95960 0.99829 0.98114 0.93170 0.80475 0.92185 0.90815 0.75153 0.80035 0.81583 0.91060 0.93388 0.93360 0.90217 0.92885 0.92975 0.93007 0.91487 0.91706 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.97 55.49 0.78 -27.42 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 20.89 27.67 -169.99 -4.70 16.18 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.07 6.62 56.52 0.37 -5.70 16 7 C -0.24 -5.97 9.18 -15.06 -0.14 -6.11 16 8 H 0.09 2.55 7.01 -52.48 -0.37 2.18 16 9 N -0.74 -15.04 3.19 -47.23 -0.15 -15.20 16 10 C 0.20 3.34 0.41 -131.82 -0.05 3.28 16 11 C 0.11 1.98 4.37 -4.04 -0.02 1.97 16 12 N -0.67 -11.68 5.08 -61.24 -0.31 -11.99 16 13 C 0.56 10.00 7.80 -12.32 -0.10 9.90 16 14 O -0.53 -10.80 15.31 5.32 0.08 -10.72 16 15 C 0.05 0.71 6.75 -82.96 -0.56 0.15 16 16 N -0.40 -5.36 9.53 -9.70 -0.09 -5.45 16 17 C 0.07 0.69 11.17 -17.47 -0.20 0.49 16 18 C 0.10 0.93 7.35 -39.12 -0.29 0.64 16 19 F -0.12 -1.05 17.28 2.25 0.04 -1.01 16 20 C -0.16 -1.55 10.14 -39.19 -0.40 -1.95 16 21 C 0.14 1.85 7.31 -38.84 -0.28 1.56 16 22 F -0.10 -1.41 15.54 2.25 0.04 -1.37 16 23 C -0.11 -1.88 4.51 -26.73 -0.12 -2.00 16 24 C -0.11 -1.76 5.77 -26.73 -0.15 -1.91 16 25 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 26 C -0.12 -1.62 5.75 -26.73 -0.15 -1.77 16 27 C -0.12 -1.68 4.65 -26.73 -0.12 -1.80 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.36 7.42 4.58 -40.82 -0.19 7.23 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.50 7.51 -51.93 -0.39 1.11 16 32 H 0.41 6.96 6.72 -40.82 -0.27 6.68 16 33 H 0.18 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.07 1.35 7.23 -51.93 -0.38 0.97 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.53 7.60 -51.93 -0.39 1.14 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.07 6.93 -51.93 -0.36 0.71 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.81 7.29 -51.93 -0.38 0.43 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -30.75 361.28 -7.41 -38.17 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.69 Total: 12.47 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.84 Total: 0.89 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.22 Total: -60.05 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.07 Total: -2.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.70 Total: 16.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.75 -7.41 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115596612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.615 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds