Wall clock time and date at job start Tue Mar 31 2020 23:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00153 * 2 1 4 4 H 1.48506 * 109.47254 * 269.99926 * 3 2 1 5 5 H 1.48504 * 109.47485 * 29.99898 * 3 2 1 6 6 H 1.48503 * 109.47262 * 150.00121 * 3 2 1 7 7 C 1.38807 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99996 * 359.72205 * 7 2 1 9 9 N 1.36935 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00144 * 173.52152 * 9 7 2 11 11 C 1.53002 * 109.47079 * 63.15979 * 10 9 7 12 12 N 1.46501 * 109.47074 * 54.66410 * 11 10 9 13 13 C 1.34772 * 120.00156 * 176.26094 * 12 11 10 14 14 O 1.21551 * 119.99488 * 359.97438 * 13 12 11 15 15 C 1.47878 * 120.00419 * 180.02562 * 13 12 11 16 16 N 1.32846 * 119.71654 * 359.72258 * 15 13 12 17 17 C 1.31367 * 121.68391 * 179.71082 * 16 15 13 18 18 C 1.39003 * 120.93592 * 0.57080 * 17 16 15 19 19 F 1.35100 * 120.33078 * 179.74795 * 18 17 16 20 20 C 1.38717 * 119.33766 * 359.71965 * 18 17 16 21 21 C 1.38828 * 118.45539 * 0.02562 * 20 18 17 22 22 F 1.35100 * 120.49262 * 179.97438 * 21 20 18 23 23 C 1.52994 * 109.47395 * 303.15687 * 10 9 7 24 24 C 1.53002 * 109.47245 * 300.00190 * 23 10 9 25 25 C 1.53001 * 109.47287 * 299.99819 * 24 23 10 26 26 C 1.52994 * 109.46830 * 59.99927 * 25 24 23 27 27 C 1.53001 * 109.46895 * 183.16016 * 10 9 7 28 28 H 0.97007 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99699 * 353.53102 * 9 7 2 30 30 H 1.09002 * 109.46887 * 174.65993 * 11 10 9 31 31 H 1.08999 * 109.46625 * 294.66121 * 11 10 9 32 32 H 0.96999 * 119.99896 * 356.25629 * 12 11 10 33 33 H 1.08005 * 119.53451 * 180.27162 * 17 16 15 34 34 H 1.08004 * 120.77388 * 180.02562 * 20 18 17 35 35 H 1.09007 * 109.46966 * 60.00111 * 23 10 9 36 36 H 1.08996 * 109.47701 * 179.97438 * 23 10 9 37 37 H 1.08999 * 109.47048 * 179.97438 * 24 23 10 38 38 H 1.08998 * 109.47285 * 60.00016 * 24 23 10 39 39 H 1.09003 * 109.46436 * 300.00259 * 25 24 23 40 40 H 1.08993 * 109.47035 * 179.97438 * 25 24 23 41 41 H 1.09007 * 109.46966 * 180.02562 * 26 25 24 42 42 H 1.08996 * 109.47701 * 60.00337 * 26 25 24 43 43 H 1.08998 * 109.47119 * 180.02562 * 27 10 9 44 44 H 1.08999 * 109.47147 * 300.00065 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4629 0.1415 11 6 3.8024 -3.3703 -1.0509 12 7 4.0933 -2.6561 -2.2965 13 6 3.9668 -3.2872 -3.4805 14 8 3.6118 -4.4492 -3.5149 15 6 4.2610 -2.5665 -4.7379 16 7 4.6442 -1.2953 -4.6940 17 6 4.9207 -0.6199 -5.7864 18 6 4.8103 -1.2115 -7.0394 19 9 5.0928 -0.5039 -8.1551 20 6 4.4078 -2.5357 -7.1328 21 6 4.1275 -3.2260 -5.9614 22 9 3.7318 -4.5170 -6.0045 23 6 3.6843 -3.1578 1.4357 24 6 3.9938 -2.2504 2.6281 25 6 5.4962 -1.9648 2.6752 26 6 5.9239 -1.2699 1.3810 27 6 5.6144 -2.1773 0.1886 28 1 -0.4850 0.8401 -0.0004 29 1 3.8645 -0.3676 -0.0957 30 1 4.4187 -4.2676 -0.9942 31 1 2.7493 -3.6507 -1.0302 32 1 4.3769 -1.7289 -2.2690 33 1 5.2335 0.4110 -5.7101 34 1 4.3147 -3.0184 -8.0944 35 1 2.6139 -3.3613 1.4022 36 1 4.2289 -4.0960 1.5416 37 1 3.6887 -2.7453 3.5501 38 1 3.4488 -1.3124 2.5221 39 1 6.0412 -2.9028 2.7812 40 1 5.7166 -1.3180 3.5243 41 1 6.9944 -1.0668 1.4143 42 1 5.3790 -0.3319 1.2749 43 1 6.1594 -3.1153 0.2942 44 1 5.9192 -1.6822 -0.7334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115596612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:44 Heat of formation + Delta-G solvation = -102.001623 kcal Electronic energy + Delta-G solvation = -30309.353030 eV Core-core repulsion = 25896.932607 eV Total energy + Delta-G solvation = -4412.420423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.28911 -50.24391 -41.67085 -40.64992 -39.62824 -35.99377 -35.14947 -33.77325 -33.06572 -32.19999 -31.58400 -30.73690 -27.24694 -25.70067 -25.39701 -24.79657 -23.49062 -22.16901 -21.62019 -19.92980 -19.72273 -19.48032 -19.39040 -18.98349 -17.55084 -17.15756 -16.96962 -16.66767 -16.53043 -16.42284 -16.24236 -15.98886 -15.65720 -15.46726 -15.07673 -14.93392 -14.70891 -14.44255 -14.38326 -14.19624 -13.90576 -13.70499 -13.57691 -13.32592 -12.93686 -12.81964 -12.66997 -12.36649 -12.08853 -11.89087 -11.67057 -11.60610 -11.31578 -11.15397 -11.11913 -11.04104 -10.75405 -10.72692 -10.30331 -9.93453 -9.23650 -7.92291 -5.25411 -0.91616 -0.36598 1.41089 1.43069 1.44269 1.51228 1.95000 2.38282 2.44360 2.55305 2.73201 2.88232 3.36673 3.38217 3.43475 3.57097 3.81612 3.88408 3.93915 4.07424 4.17495 4.32991 4.37319 4.44517 4.56733 4.63639 4.70216 4.72373 4.78286 4.88327 4.94293 5.03615 5.17024 5.20938 5.23336 5.37042 5.43874 5.48207 5.51750 5.62639 5.75279 5.90745 6.17765 6.30914 6.53908 7.08349 7.18014 7.91527 8.11995 9.29659 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003896 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.742077 B = 7185.116460 C = 8080.060747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.065 4.065 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.309 1.309 6 H -0.244 1.244 7 C -0.197 4.197 8 H 0.051 0.949 9 N -0.730 5.730 10 C 0.195 3.805 11 C 0.119 3.881 12 N -0.674 5.674 13 C 0.555 3.445 14 O -0.568 6.568 15 C 0.020 3.980 16 N -0.415 5.415 17 C 0.075 3.925 18 C 0.118 3.882 19 F -0.106 7.106 20 C -0.141 4.141 21 C 0.127 3.873 22 F -0.111 7.111 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.112 4.112 28 H 0.252 0.748 29 H 0.366 0.634 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.414 0.586 33 H 0.216 0.784 34 H 0.199 0.801 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.384 -1.888 -10.056 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.641 5.641 2 C -0.255 4.255 3 Si 0.772 3.228 4 H -0.206 1.206 5 H -0.237 1.237 6 H -0.168 1.168 7 C -0.328 4.328 8 H 0.069 0.931 9 N -0.373 5.373 10 C 0.105 3.895 11 C -0.007 4.007 12 N -0.323 5.323 13 C 0.340 3.660 14 O -0.448 6.448 15 C -0.118 4.118 16 N -0.125 5.125 17 C -0.088 4.088 18 C 0.096 3.904 19 F -0.084 7.084 20 C -0.167 4.167 21 C 0.104 3.896 22 F -0.089 7.089 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.150 4.150 28 H 0.060 0.940 29 H 0.201 0.799 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.252 0.748 33 H 0.232 0.768 34 H 0.216 0.784 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.999 -2.444 -9.194 20.359 hybrid contribution -0.809 0.939 -0.996 1.590 sum 17.190 -1.505 -10.190 20.040 Atomic orbital electron populations 1.69902 1.07325 1.26028 1.60852 1.25380 0.95770 1.00795 1.03565 0.85586 0.79014 0.80329 0.77913 1.20645 1.23718 1.16835 1.18724 0.82468 0.92598 1.38990 0.93114 1.42716 1.02151 1.04215 1.88257 1.20018 0.92383 0.85638 0.91508 1.21873 0.99428 0.95486 0.83900 1.45566 1.65403 1.16571 1.04729 1.17945 0.78375 0.85811 0.83842 1.90802 1.49129 1.17453 1.87369 1.21293 1.05240 0.92195 0.93088 1.67718 1.07745 1.04821 1.32252 1.23653 0.97615 1.02629 0.84942 1.18663 0.97956 0.89576 0.84233 1.91621 1.90159 1.77265 1.49398 1.21887 1.01042 0.93859 0.99960 1.18472 0.97423 0.80288 0.93420 1.91621 1.87117 1.33218 1.96955 1.21737 0.99938 0.98480 0.95043 1.21329 0.97101 0.99381 0.96781 1.21474 0.94806 1.00959 0.97369 1.21498 1.01203 0.98157 0.94410 1.21738 0.92893 1.01388 0.98967 0.93969 0.79927 0.90471 0.94957 0.74817 0.76799 0.78406 0.94860 0.90479 0.92460 0.93964 0.90559 0.91835 0.89976 0.93664 0.89252 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.08 13.97 21.65 0.30 -62.78 16 2 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.94 43.85 27.67 68.60 1.90 45.75 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.24 -9.97 6.62 99.48 0.66 -9.31 16 7 C -0.20 -10.43 9.18 84.03 0.77 -9.65 16 8 H 0.05 3.08 7.01 -2.91 -0.02 3.06 16 9 N -0.73 -30.03 3.19 -303.35 -0.97 -31.00 16 10 C 0.19 6.49 0.41 3.60 0.00 6.50 16 11 C 0.12 4.28 4.37 86.38 0.38 4.65 16 12 N -0.67 -23.63 5.08 -465.94 -2.37 -25.99 16 13 C 0.56 20.32 7.80 86.80 0.68 20.99 16 14 O -0.57 -24.06 15.31 -3.88 -0.06 -24.12 16 15 C 0.02 0.58 6.75 41.88 0.28 0.86 16 16 N -0.42 -10.57 9.53 -184.60 -1.76 -12.33 16 17 C 0.07 1.30 11.17 84.95 0.95 2.25 16 18 C 0.12 1.82 7.35 22.57 0.17 1.99 16 19 F -0.11 -1.45 17.28 44.97 0.78 -0.67 16 20 C -0.14 -2.37 10.14 22.53 0.23 -2.14 16 21 C 0.13 3.26 7.31 22.75 0.17 3.42 16 22 F -0.11 -3.32 15.54 44.97 0.70 -2.62 16 23 C -0.11 -3.72 4.51 30.59 0.14 -3.58 16 24 C -0.11 -3.37 5.77 30.60 0.18 -3.19 16 25 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 26 C -0.12 -2.77 5.75 30.59 0.18 -2.59 16 27 C -0.11 -2.82 4.65 30.60 0.14 -2.68 16 28 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 29 H 0.37 14.57 4.58 -92.71 -0.42 14.14 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.03 1.42 7.51 -2.39 -0.02 1.40 16 32 H 0.41 13.85 6.72 -92.71 -0.62 13.23 16 33 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.03 1.33 7.23 -2.38 -0.02 1.31 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.62 7.60 -2.39 -0.02 1.60 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.04 1.29 6.93 -2.39 -0.02 1.28 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.61 7.29 -2.39 -0.02 1.60 16 Total: -1.00 -72.72 361.28 3.39 -69.33 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.04 Total: 33.23 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 4.90 Total: 11.21 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -4.79 Total: -132.10 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 1.48 Total: -3.29 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.90 Total: 45.75 kcal Total: -72.72 3.39 -69.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115596612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.675 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds