Wall clock time and date at job start Tue Mar 31 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35622 * 125.67144 * 2 1 4 4 C 1.35518 * 108.84978 * 180.26088 * 3 2 1 5 5 Cl 1.73603 * 126.07795 * 179.97438 * 4 3 2 6 6 C 1.39889 * 107.85312 * 359.97438 * 4 3 2 7 7 C 1.37633 * 125.67799 * 180.29912 * 2 1 3 8 8 C 1.46671 * 126.21915 * 359.70517 * 7 2 1 9 9 O 1.21702 * 119.99550 * 172.04260 * 8 7 2 10 10 N 1.34774 * 120.00618 * 352.04928 * 8 7 2 11 11 C 1.46497 * 120.00015 * 186.49401 * 10 8 7 12 12 C 1.53006 * 109.46752 * 178.48137 * 11 10 8 13 13 N 1.46507 * 109.46952 * 298.30700 * 12 11 10 14 14 C 1.36938 * 120.00240 * 294.55427 * 13 12 11 15 15 H 1.07999 * 119.99908 * 4.28237 * 14 13 12 16 16 C 1.38812 * 119.99558 * 184.28800 * 14 13 12 17 17 N 1.31613 * 120.00511 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99477 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47525 * 59.99717 * 18 16 14 20 20 H 1.48508 * 109.47255 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47302 * 299.99458 * 18 16 14 22 22 C 1.53003 * 109.46830 * 178.31364 * 12 11 10 23 23 C 1.52999 * 109.47025 * 179.97438 * 22 12 11 24 24 C 1.52998 * 109.47019 * 59.99565 * 23 22 12 25 25 C 1.52996 * 109.47478 * 299.99837 * 24 23 22 26 26 C 1.52993 * 109.47563 * 58.30983 * 12 11 10 27 27 H 1.08996 * 109.47716 * 260.96309 * 1 2 3 28 28 H 1.09001 * 109.47644 * 20.96543 * 1 2 3 29 29 H 1.09006 * 109.47285 * 140.96508 * 1 2 3 30 30 H 1.07996 * 125.58052 * 0.22494 * 3 2 1 31 31 H 1.08000 * 126.45359 * 179.97438 * 6 4 3 32 32 H 0.97004 * 119.99555 * 6.49219 * 10 8 7 33 33 H 1.08998 * 109.47354 * 298.47638 * 11 10 8 34 34 H 1.09000 * 109.47193 * 58.48773 * 11 10 8 35 35 H 0.97001 * 119.99658 * 114.55127 * 13 12 11 36 36 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.46947 * 299.99485 * 22 12 11 38 38 H 1.09003 * 109.47386 * 59.99665 * 22 12 11 39 39 H 1.09007 * 109.47139 * 300.00109 * 23 22 12 40 40 H 1.08995 * 109.47486 * 179.97438 * 23 22 12 41 41 H 1.09009 * 109.46948 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.47201 * 60.00209 * 24 23 22 43 43 H 1.08996 * 109.47208 * 300.00368 * 25 24 23 44 44 H 1.09003 * 109.47287 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47022 * 300.00693 * 26 12 11 46 46 H 1.08998 * 109.46610 * 59.99796 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1018 0.0000 4 6 3.5530 0.7096 -0.0058 5 17 4.9377 1.7568 -0.0088 6 6 3.5782 -0.6891 -0.0091 7 6 2.2677 -1.1180 -0.0058 8 6 1.8120 -2.5121 -0.0070 9 8 2.6145 -3.4144 -0.1583 10 7 0.5046 -2.7940 0.1593 11 6 0.0674 -4.1850 0.3006 12 6 -1.4474 -4.2243 0.5128 13 7 -1.7861 -3.5133 1.7483 14 6 -1.3653 -4.0014 2.9565 15 1 -0.7262 -4.8712 2.9946 16 6 -1.7604 -3.3783 4.1323 17 7 -2.5389 -2.3181 4.0859 18 14 -1.1871 -4.0446 5.7806 19 1 0.2964 -4.0126 5.8385 20 1 -1.7428 -3.2068 6.8736 21 1 -1.6586 -5.4436 5.9401 22 6 -1.9099 -5.6789 0.6185 23 6 -3.4245 -5.7183 0.8313 24 6 -4.1234 -5.0455 -0.3517 25 6 -3.6609 -3.5909 -0.4573 26 6 -2.1459 -3.5517 -0.6705 27 1 -0.3634 -0.1614 1.0148 28 1 -0.3634 0.9596 -0.3677 29 1 -0.3634 -0.7983 -0.6472 30 1 1.9088 2.1244 0.0034 31 1 4.4583 -1.3150 -0.0142 32 1 -0.1469 -2.0757 0.1853 33 1 0.3222 -4.7396 -0.6024 34 1 0.5661 -4.6373 1.1578 35 1 -2.3083 -2.6968 1.7103 36 1 -2.8147 -1.8825 4.9075 37 1 -1.6580 -6.2079 -0.3006 38 1 -1.4123 -6.1582 1.4617 39 1 -3.6761 -5.1893 1.7506 40 1 -3.7541 -6.7545 0.9062 41 1 -5.2025 -5.0732 -0.1999 42 1 -3.8718 -5.5744 -1.2710 43 1 -3.9125 -3.0621 0.4619 44 1 -4.1592 -3.1115 -1.2999 45 1 -1.8163 -2.5155 -0.7458 46 1 -1.8939 -4.0808 -1.5896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115621531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:55 Heat of formation + Delta-G solvation = 12.420973 kcal Electronic energy + Delta-G solvation = -28541.892451 eV Core-core repulsion = 24686.230444 eV Total energy + Delta-G solvation = -3855.662007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.50434 -39.39860 -38.21489 -36.42509 -34.72579 -33.57890 -32.65488 -31.27498 -30.34757 -29.49942 -28.44943 -26.72210 -25.54474 -23.86624 -22.59371 -21.93776 -20.75856 -20.34758 -19.85948 -18.43563 -17.75442 -17.19715 -15.92362 -15.76633 -15.49715 -15.20665 -14.67282 -14.32044 -14.24057 -14.03637 -13.91143 -13.69083 -13.53056 -13.13263 -12.97043 -12.88745 -12.80591 -12.34521 -12.09323 -11.92121 -11.78849 -11.67814 -11.45483 -11.18945 -10.90140 -10.84482 -10.83371 -10.64156 -10.26182 -10.11172 -9.94597 -9.78306 -9.68808 -9.38731 -8.96265 -8.76763 -8.59793 -8.19799 -7.09163 -5.87984 -3.16525 1.48229 2.07752 2.46853 2.87926 3.38911 3.43557 3.45064 3.46790 3.66649 4.50921 4.52985 4.69359 4.86605 5.05562 5.10452 5.16352 5.17590 5.27115 5.38707 5.48264 5.52741 5.63158 5.72096 5.74811 5.88704 5.90122 5.92638 6.01301 6.07234 6.11507 6.21000 6.34861 6.42587 6.46520 6.51785 6.66575 6.71545 6.72448 6.73969 6.87874 6.93955 6.97150 7.14091 7.64375 7.84181 8.29827 8.48153 9.42949 9.94076 10.30551 11.33997 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.003723 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.164562 B = 7518.710952 C = 8695.992459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.418 5.418 3 C 0.032 3.968 4 C -0.126 4.126 5 Cl -0.055 7.055 6 C -0.105 4.105 7 C -0.030 4.030 8 C 0.583 3.417 9 O -0.538 6.538 10 N -0.708 5.708 11 C 0.111 3.889 12 C 0.191 3.809 13 N -0.710 5.710 14 C -0.232 4.232 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.933 5.933 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.155 0.845 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 5.370 -11.922 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.093 5.093 3 C -0.105 4.105 4 C -0.159 4.159 5 Cl -0.027 7.027 6 C -0.131 4.131 7 C -0.143 4.143 8 C 0.369 3.631 9 O -0.416 6.416 10 N -0.362 5.362 11 C -0.015 4.015 12 C 0.098 3.902 13 N -0.351 5.351 14 C -0.363 4.363 15 H 0.087 0.913 16 C -0.202 4.202 17 N -0.581 5.581 18 Si 0.731 3.269 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.152 4.152 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.194 0.806 31 H 0.173 0.827 32 H 0.237 0.763 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.289 4.661 -11.835 12.924 hybrid contribution -0.045 0.455 1.169 1.255 sum 2.244 5.116 -10.666 12.041 Atomic orbital electron populations 1.22514 0.75827 1.05021 1.05496 1.43964 1.06687 1.05318 1.53361 1.21637 0.88916 0.92130 1.07806 1.19855 0.87811 0.91259 1.16974 1.98308 1.40991 1.65607 1.97761 1.21082 0.95511 0.92487 1.04039 1.20599 0.90271 0.86991 1.16425 1.16944 0.82852 0.85980 0.77284 1.90810 1.54048 1.46027 1.50723 1.46231 1.07013 1.10630 1.72346 1.22037 0.97840 0.81028 1.00633 1.19823 0.89903 0.92757 0.87680 1.42410 1.64358 1.28375 0.99990 1.19036 1.23803 1.09855 0.83607 0.91251 1.24632 0.99994 0.98173 0.97433 1.69611 1.39530 1.22056 1.26904 0.86383 0.78238 0.78121 0.84165 1.21349 1.21824 1.21247 1.21758 0.96475 0.96705 1.00380 1.21378 0.94816 0.99070 0.99470 1.21467 0.99158 0.95934 0.98435 1.21481 0.94974 0.97101 1.01715 1.21711 0.95984 0.99534 0.97949 0.88183 0.88264 0.89330 0.80646 0.82723 0.76280 0.92726 0.91084 0.78257 0.93548 0.93603 0.91590 0.89719 0.93680 0.92951 0.93186 0.90649 0.93240 0.93262 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 9.48 59.85 0.57 1.10 16 2 N -0.42 -5.36 3.16 -120.19 -0.38 -5.74 16 3 C 0.03 0.37 11.34 -16.85 -0.19 0.18 16 4 C -0.13 -1.67 6.66 -39.94 -0.27 -1.93 16 5 Cl -0.06 -0.65 29.30 -51.86 -1.52 -2.17 16 6 C -0.10 -1.59 10.66 -39.09 -0.42 -2.01 16 7 C -0.03 -0.48 6.88 -81.98 -0.56 -1.04 16 8 C 0.58 10.54 7.76 -12.86 -0.10 10.44 16 9 O -0.54 -11.28 16.91 5.19 0.09 -11.19 16 10 N -0.71 -11.80 5.02 -61.62 -0.31 -12.11 16 11 C 0.11 1.94 4.54 -4.04 -0.02 1.92 16 12 C 0.19 3.18 0.41 -131.81 -0.05 3.13 16 13 N -0.71 -14.54 3.78 -47.23 -0.18 -14.72 16 14 C -0.23 -5.64 8.55 -15.06 -0.13 -5.77 16 15 H 0.07 1.72 6.70 -52.49 -0.35 1.37 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 17 N -0.93 -25.32 13.06 55.49 0.72 -24.59 16 18 Si 0.90 21.50 29.55 -169.99 -5.02 16.48 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -1.86 4.47 -26.73 -0.12 -1.98 16 23 C -0.11 -1.76 5.77 -26.73 -0.15 -1.91 16 24 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 25 C -0.12 -1.59 5.75 -26.71 -0.15 -1.74 16 26 C -0.11 -1.58 4.57 -26.71 -0.12 -1.70 16 27 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.09 0.88 5.73 -51.93 -0.30 0.58 16 30 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.40 5.94 2.82 -40.82 -0.11 5.83 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.45 7.45 -51.93 -0.39 1.06 16 35 H 0.38 8.34 6.72 -40.82 -0.27 8.06 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.20 7.07 -51.93 -0.37 0.83 16 39 H 0.08 1.65 7.50 -51.93 -0.39 1.26 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.22 6.97 -51.93 -0.36 0.86 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.63 6.31 -51.93 -0.33 0.31 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -29.18 375.22 -9.57 -38.75 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.65 Total: 12.92 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.97 Total: -3.28 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.14 Total: -57.17 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.52 Total: -2.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.18 -9.57 -38.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115621531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.168 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds