Wall clock time and date at job start Tue Mar 31 2020 23:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00467 * 2 1 4 4 H 1.48494 * 109.46945 * 274.96644 * 3 2 1 5 5 H 1.48495 * 109.47050 * 34.96889 * 3 2 1 6 6 H 1.48506 * 109.46990 * 154.96689 * 3 2 1 7 7 C 1.37880 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99479 * 5.03091 * 7 2 1 9 9 C 1.50699 * 120.00453 * 185.02539 * 7 2 1 10 10 H 1.08994 * 109.49787 * 325.00520 * 9 7 2 11 11 C 1.53035 * 109.49700 * 204.90207 * 9 7 2 12 12 C 1.53045 * 109.53639 * 178.68492 * 11 9 7 13 13 C 1.53190 * 109.31037 * 61.36467 * 12 11 9 14 14 N 1.46961 * 108.89258 * 305.44209 * 13 12 11 15 15 C 1.34772 * 120.65809 * 233.54009 * 14 13 12 16 16 O 1.21341 * 120.00146 * 172.77164 * 15 14 13 17 17 C 1.49458 * 119.99809 * 352.76567 * 15 14 13 18 18 O 1.21348 * 119.99930 * 6.00926 * 17 15 14 19 19 N 1.34773 * 119.99804 * 186.01226 * 17 15 14 20 20 C 1.47154 * 120.98298 * 6.86842 * 19 17 15 21 21 C 1.53298 * 108.38089 * 129.44366 * 20 19 17 22 22 O 1.42967 * 109.22055 * 52.30839 * 21 20 19 23 23 C 1.42960 * 114.16516 * 297.41379 * 22 21 20 24 24 H 1.09005 * 109.51691 * 302.66211 * 23 22 21 25 25 C 1.50697 * 109.51564 * 182.55700 * 23 22 21 26 26 N 1.34774 * 120.00328 * 174.99732 * 25 23 22 27 27 O 1.21280 * 119.99795 * 355.00298 * 25 23 22 28 28 C 1.47148 * 120.98230 * 186.59628 * 19 17 15 29 29 C 1.46930 * 118.70872 * 53.35820 * 14 13 12 30 30 H 0.97010 * 119.99300 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46629 * 298.70380 * 11 9 7 32 32 H 1.09005 * 109.46395 * 58.68208 * 11 9 7 33 33 H 1.09002 * 109.49862 * 181.31870 * 12 11 9 34 34 H 1.09008 * 109.49666 * 301.41709 * 12 11 9 35 35 H 1.09002 * 109.58714 * 65.15846 * 13 12 11 36 36 H 1.09005 * 109.58469 * 185.43806 * 13 12 11 37 37 H 1.08992 * 109.68382 * 249.16533 * 20 19 17 38 38 H 1.08997 * 109.68024 * 9.68950 * 20 19 17 39 39 H 1.09002 * 109.51551 * 172.22509 * 21 20 19 40 40 H 1.08999 * 109.51906 * 292.38264 * 21 20 19 41 41 H 0.97005 * 120.00159 * 0.02562 * 26 25 23 42 42 H 0.97002 * 119.99999 * 179.97438 * 26 25 23 43 43 H 1.09004 * 109.67877 * 350.27479 * 28 19 17 44 44 H 1.09004 * 109.68824 * 110.83059 * 28 19 17 45 45 H 1.08998 * 109.58200 * 186.78311 * 29 14 13 46 46 H 1.08998 * 109.58503 * 66.50183 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3918 2.1069 -1.3948 5 1 1.5032 2.6200 0.8024 6 1 3.5954 1.4119 0.5925 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1276 -0.0811 9 6 3.5071 -1.1967 0.1149 10 1 3.9133 -0.3309 -0.4080 11 6 4.0645 -2.4785 -0.5082 12 6 5.5925 -2.4670 -0.4220 13 6 6.0165 -2.4205 1.0493 14 7 5.3668 -1.2717 1.6957 15 6 6.0956 -0.3583 2.3672 16 8 5.5679 0.6519 2.7836 17 6 7.5539 -0.5896 2.5990 18 8 8.1051 -1.5438 2.0908 19 7 8.2565 0.2614 3.3725 20 6 7.5848 1.3368 4.1194 21 6 8.0499 1.2752 5.5788 22 8 9.4790 1.2722 5.6176 23 6 10.0792 0.1392 4.9853 24 1 9.7078 -0.7753 5.4479 25 6 11.5764 0.2100 5.1415 26 7 12.3479 -0.8075 4.7101 27 8 12.0872 1.1825 5.6554 28 6 9.7174 0.1390 3.4999 29 6 3.9075 -1.1359 1.5923 30 1 -0.4849 0.8402 -0.0004 31 1 3.6770 -3.3428 0.0310 32 1 3.7605 -2.5363 -1.5534 33 1 5.9900 -3.3693 -0.8869 34 1 5.9795 -1.5895 -0.9401 35 1 5.7086 -3.3398 1.5476 36 1 7.0995 -2.3149 1.1143 37 1 7.8500 2.3029 3.6901 38 1 6.5048 1.1977 4.0715 39 1 7.6730 2.1443 6.1181 40 1 7.6711 0.3650 6.0436 41 1 11.9394 -1.5853 4.2988 42 1 13.3116 -0.7617 4.8103 43 1 10.0489 -0.7932 3.0426 44 1 10.2009 0.9826 3.0072 45 1 3.5986 -0.1802 2.0155 46 1 3.4255 -1.9489 2.1353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118441626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:59 Heat of formation + Delta-G solvation = -110.525997 kcal Electronic energy + Delta-G solvation = -30925.855159 eV Core-core repulsion = 26624.152606 eV Total energy + Delta-G solvation = -4301.702552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37330 -40.27776 -38.93324 -38.21365 -37.32395 -35.19853 -34.25085 -33.32130 -32.03338 -31.88547 -30.54418 -28.72306 -26.49202 -25.24242 -25.22754 -23.45877 -22.03528 -21.92841 -20.93988 -19.90121 -18.96316 -18.28860 -17.65547 -17.17092 -17.07437 -16.66019 -16.33696 -16.22079 -16.18018 -15.74850 -15.04346 -14.86528 -14.56423 -14.35907 -14.23060 -14.09428 -13.75542 -13.44879 -13.32524 -13.25458 -12.81732 -12.66023 -12.54956 -12.25291 -12.02185 -11.70980 -11.30299 -11.15591 -10.78748 -10.69476 -10.63331 -10.44113 -10.34567 -10.18917 -10.00044 -9.72330 -9.55652 -9.28019 -9.07090 -8.72622 -8.63663 -8.26077 -6.17586 -4.19108 1.34253 1.94436 2.24434 2.55015 3.15947 3.26946 3.34745 3.37902 3.45912 3.66174 4.08865 4.20847 4.31359 4.37234 4.42473 4.63742 4.85844 4.87194 5.08253 5.14144 5.21312 5.33659 5.43192 5.44965 5.63293 5.73991 5.82670 5.94734 6.11571 6.12782 6.23196 6.25558 6.40121 6.47642 6.53455 6.58108 6.66222 6.75117 6.80671 6.83363 7.16354 7.29003 7.46476 7.64448 7.67701 7.75537 8.09093 8.42053 8.87645 9.45148 10.94434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.003044 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.098779 B = 9195.639497 C =10206.479531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.867 3.133 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.251 1.251 7 C -0.516 4.516 8 H 0.076 0.924 9 C 0.007 3.993 10 H 0.034 0.966 11 C -0.106 4.106 12 C -0.134 4.134 13 C 0.053 3.947 14 N -0.563 5.563 15 C 0.497 3.503 16 O -0.522 6.522 17 C 0.518 3.482 18 O -0.511 6.511 19 N -0.587 5.587 20 C 0.033 3.967 21 C 0.047 3.953 22 O -0.353 6.353 23 C 0.061 3.939 24 H 0.091 0.909 25 C 0.529 3.471 26 N -0.850 5.850 27 O -0.515 6.515 28 C 0.085 3.915 29 C 0.105 3.895 30 H 0.265 0.735 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.144 0.856 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.404 0.596 42 H 0.408 0.592 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.568 -3.953 8.406 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.693 3.307 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.175 1.175 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.012 4.012 10 H 0.052 0.948 11 C -0.144 4.144 12 C -0.172 4.172 13 C -0.068 4.068 14 N -0.294 5.294 15 C 0.280 3.720 16 O -0.401 6.401 17 C 0.303 3.697 18 O -0.389 6.389 19 N -0.321 5.321 20 C -0.088 4.088 21 C -0.030 4.030 22 O -0.270 6.270 23 C -0.002 4.002 24 H 0.109 0.891 25 C 0.311 3.689 26 N -0.417 5.417 27 O -0.389 6.389 28 C -0.038 4.038 29 C -0.015 4.015 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.161 0.839 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.233 0.767 42 H 0.240 0.760 43 H 0.128 0.872 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.621 -2.956 8.799 23.529 hybrid contribution 0.264 0.346 -0.349 0.557 sum 21.885 -2.610 8.450 23.604 Atomic orbital electron populations 1.69909 1.06387 1.27203 1.49487 1.25072 0.94691 0.99127 0.93864 0.86999 0.81484 0.83752 0.78445 1.20515 1.21235 1.17518 1.20900 0.88542 0.94710 1.51213 0.90586 1.19458 0.97050 0.94532 0.90188 0.94759 1.21566 0.92274 0.99354 1.01180 1.21969 0.98409 1.01416 0.95422 1.23137 1.03074 0.87526 0.93062 1.48529 1.09468 1.23369 1.48019 1.19759 0.86603 0.84481 0.81191 1.90470 1.71882 1.26550 1.51223 1.20624 0.88619 0.81783 0.78683 1.90326 1.71193 1.28402 1.48952 1.47974 1.06799 1.31395 1.45904 1.23682 1.03904 0.90325 0.90907 1.23225 0.79925 1.03662 0.96221 1.88092 1.19871 1.41965 1.77118 1.22149 0.91780 0.92217 0.94057 0.89098 1.19921 0.88175 0.82835 0.77937 1.43745 1.11165 1.21860 1.64905 1.90796 1.74684 1.31658 1.41742 1.22151 0.81154 1.05295 0.95226 1.22808 0.74271 1.02783 1.01670 0.92483 0.92689 0.92177 0.91553 0.92357 0.91881 0.83940 0.90010 0.82646 0.86494 0.92246 0.76703 0.76029 0.87221 0.89494 0.89688 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.30 26.42 -169.99 -4.49 16.80 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.25 -6.09 5.77 56.52 0.33 -5.76 16 7 C -0.52 -13.68 8.87 -34.44 -0.31 -13.99 16 8 H 0.08 2.18 8.05 -52.48 -0.42 1.76 16 9 C 0.01 0.16 1.78 -91.65 -0.16 0.00 16 10 H 0.03 0.80 5.73 -51.93 -0.30 0.51 16 11 C -0.11 -1.96 5.14 -26.69 -0.14 -2.10 16 12 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 13 C 0.05 0.79 6.16 -3.69 -0.02 0.77 16 14 N -0.56 -9.88 2.98 -173.24 -0.52 -10.40 16 15 C 0.50 8.36 7.62 -11.58 -0.09 8.27 16 16 O -0.52 -9.66 12.59 5.50 0.07 -9.59 16 17 C 0.52 7.16 7.69 -11.58 -0.09 7.07 16 18 O -0.51 -7.06 12.49 5.50 0.07 -6.99 16 19 N -0.59 -6.78 3.03 -173.04 -0.52 -7.30 16 20 C 0.03 0.37 6.17 -3.53 -0.02 0.35 16 21 C 0.05 0.44 6.99 37.31 0.26 0.70 16 22 O -0.35 -4.01 9.92 -55.06 -0.55 -4.56 16 23 C 0.06 0.54 3.17 -27.95 -0.09 0.45 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 C 0.53 4.92 7.45 -10.99 -0.08 4.84 16 26 N -0.85 -4.01 8.84 31.22 0.28 -3.73 16 27 O -0.52 -7.24 17.35 -14.27 -0.25 -7.49 16 28 C 0.08 0.77 5.88 -3.75 -0.02 0.75 16 29 C 0.10 2.15 5.42 -3.71 -0.02 2.13 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.14 2.05 3.92 -56.57 -0.22 1.83 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.16 2.03 4.40 -54.47 -0.24 1.79 16 39 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.40 0.86 8.83 -40.82 -0.36 0.50 16 42 H 0.41 1.47 8.93 -40.82 -0.36 1.10 16 43 H 0.11 0.83 7.06 -51.93 -0.37 0.46 16 44 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 45 H 0.08 1.92 5.49 -51.93 -0.28 1.63 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -34.25 361.73 -7.14 -41.39 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.42 Total: 3.07 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.04 Total: 9.04 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.01 Total: -47.14 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.66 Total: -28.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.49 Total: 16.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.25 -7.14 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118441626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.133 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds