Wall clock time and date at job start Tue Mar 31 2020 23:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00467 * 2 1 4 4 H 1.48494 * 109.46945 * 274.96644 * 3 2 1 5 5 H 1.48495 * 109.47050 * 34.96889 * 3 2 1 6 6 H 1.48506 * 109.46990 * 154.96689 * 3 2 1 7 7 C 1.37880 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99479 * 5.03091 * 7 2 1 9 9 C 1.50699 * 120.00453 * 185.02539 * 7 2 1 10 10 H 1.08994 * 109.49787 * 325.00520 * 9 7 2 11 11 C 1.53035 * 109.49700 * 204.90207 * 9 7 2 12 12 C 1.53045 * 109.53639 * 178.68492 * 11 9 7 13 13 C 1.53190 * 109.31037 * 61.36467 * 12 11 9 14 14 N 1.46961 * 108.89258 * 305.44209 * 13 12 11 15 15 C 1.34772 * 120.65809 * 233.54009 * 14 13 12 16 16 O 1.21341 * 120.00146 * 172.77164 * 15 14 13 17 17 C 1.49458 * 119.99809 * 352.76567 * 15 14 13 18 18 O 1.21348 * 119.99930 * 6.00926 * 17 15 14 19 19 N 1.34773 * 119.99804 * 186.01226 * 17 15 14 20 20 C 1.47154 * 120.98298 * 6.86842 * 19 17 15 21 21 C 1.53298 * 108.38089 * 129.44366 * 20 19 17 22 22 O 1.42967 * 109.22055 * 52.30839 * 21 20 19 23 23 C 1.42960 * 114.16516 * 297.41379 * 22 21 20 24 24 H 1.09005 * 109.51691 * 302.66211 * 23 22 21 25 25 C 1.50697 * 109.51564 * 182.55700 * 23 22 21 26 26 N 1.34774 * 120.00328 * 174.99732 * 25 23 22 27 27 O 1.21280 * 119.99795 * 355.00298 * 25 23 22 28 28 C 1.47148 * 120.98230 * 186.59628 * 19 17 15 29 29 C 1.46930 * 118.70872 * 53.35820 * 14 13 12 30 30 H 0.97010 * 119.99300 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46629 * 298.70380 * 11 9 7 32 32 H 1.09005 * 109.46395 * 58.68208 * 11 9 7 33 33 H 1.09002 * 109.49862 * 181.31870 * 12 11 9 34 34 H 1.09008 * 109.49666 * 301.41709 * 12 11 9 35 35 H 1.09002 * 109.58714 * 65.15846 * 13 12 11 36 36 H 1.09005 * 109.58469 * 185.43806 * 13 12 11 37 37 H 1.08992 * 109.68382 * 249.16533 * 20 19 17 38 38 H 1.08997 * 109.68024 * 9.68950 * 20 19 17 39 39 H 1.09002 * 109.51551 * 172.22509 * 21 20 19 40 40 H 1.08999 * 109.51906 * 292.38264 * 21 20 19 41 41 H 0.97005 * 120.00159 * 0.02562 * 26 25 23 42 42 H 0.97002 * 119.99999 * 179.97438 * 26 25 23 43 43 H 1.09004 * 109.67877 * 350.27479 * 28 19 17 44 44 H 1.09004 * 109.68824 * 110.83059 * 28 19 17 45 45 H 1.08998 * 109.58200 * 186.78311 * 29 14 13 46 46 H 1.08998 * 109.58503 * 66.50183 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3918 2.1069 -1.3948 5 1 1.5032 2.6200 0.8024 6 1 3.5954 1.4119 0.5925 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1276 -0.0811 9 6 3.5071 -1.1967 0.1149 10 1 3.9133 -0.3309 -0.4080 11 6 4.0645 -2.4785 -0.5082 12 6 5.5925 -2.4670 -0.4220 13 6 6.0165 -2.4205 1.0493 14 7 5.3668 -1.2717 1.6957 15 6 6.0956 -0.3583 2.3672 16 8 5.5679 0.6519 2.7836 17 6 7.5539 -0.5896 2.5990 18 8 8.1051 -1.5438 2.0908 19 7 8.2565 0.2614 3.3725 20 6 7.5848 1.3368 4.1194 21 6 8.0499 1.2752 5.5788 22 8 9.4790 1.2722 5.6176 23 6 10.0792 0.1392 4.9853 24 1 9.7078 -0.7753 5.4479 25 6 11.5764 0.2100 5.1415 26 7 12.3479 -0.8075 4.7101 27 8 12.0872 1.1825 5.6554 28 6 9.7174 0.1390 3.4999 29 6 3.9075 -1.1359 1.5923 30 1 -0.4849 0.8402 -0.0004 31 1 3.6770 -3.3428 0.0310 32 1 3.7605 -2.5363 -1.5534 33 1 5.9900 -3.3693 -0.8869 34 1 5.9795 -1.5895 -0.9401 35 1 5.7086 -3.3398 1.5476 36 1 7.0995 -2.3149 1.1143 37 1 7.8500 2.3029 3.6901 38 1 6.5048 1.1977 4.0715 39 1 7.6730 2.1443 6.1181 40 1 7.6711 0.3650 6.0436 41 1 11.9394 -1.5853 4.2988 42 1 13.3116 -0.7617 4.8103 43 1 10.0489 -0.7932 3.0426 44 1 10.2009 0.9826 3.0072 45 1 3.5986 -0.1802 2.0155 46 1 3.4255 -1.9489 2.1353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118441626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:58 Heat of formation + Delta-G solvation = -138.169169 kcal Electronic energy + Delta-G solvation = -30927.053857 eV Core-core repulsion = 26624.152606 eV Total energy + Delta-G solvation = -4302.901250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43182 -41.19071 -39.98989 -39.19287 -38.67800 -36.19866 -35.13152 -34.89552 -33.60067 -32.66117 -32.15678 -29.63089 -27.75391 -26.91498 -26.23789 -24.45483 -23.48206 -23.07092 -21.68219 -21.17407 -20.32473 -19.09233 -18.95195 -18.40761 -18.17021 -17.86626 -17.47014 -17.19796 -16.91547 -16.72456 -16.37078 -15.94909 -15.75265 -15.54260 -15.44238 -15.14966 -15.05198 -14.97826 -14.52341 -14.38542 -14.14293 -14.06588 -13.82106 -13.55156 -13.06147 -13.03435 -12.76978 -12.56114 -12.23300 -12.05438 -12.01351 -11.60853 -11.60246 -11.44700 -11.17527 -11.09825 -11.02581 -10.76265 -10.72334 -10.02284 -9.90589 -9.68317 -8.34454 -6.37648 0.17355 0.97966 1.28156 1.35436 1.44599 1.46538 1.92024 1.97402 2.19072 2.30064 2.93686 3.01859 3.04444 3.44089 3.67803 3.81807 3.87604 4.02469 4.10773 4.15625 4.17179 4.21956 4.35768 4.47465 4.50641 4.56183 4.64938 4.72348 4.78028 4.83254 4.90065 5.00003 5.10020 5.16966 5.24516 5.38346 5.56951 5.60963 5.67502 5.71772 5.75602 5.92009 6.22437 6.28228 6.33988 6.51964 6.71382 6.81623 7.21462 7.29283 8.81487 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.003044 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.098779 B = 9195.639497 C =10206.479531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.511 4.511 8 H 0.044 0.956 9 C 0.006 3.994 10 H 0.023 0.977 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.054 3.946 14 N -0.571 5.571 15 C 0.491 3.509 16 O -0.544 6.544 17 C 0.526 3.474 18 O -0.508 6.508 19 N -0.579 5.579 20 C 0.033 3.967 21 C 0.052 3.948 22 O -0.376 6.376 23 C 0.060 3.940 24 H 0.113 0.887 25 C 0.531 3.469 26 N -0.824 5.824 27 O -0.571 6.571 28 C 0.087 3.913 29 C 0.117 3.883 30 H 0.266 0.734 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.070 0.930 41 H 0.420 0.580 42 H 0.416 0.584 43 H 0.131 0.869 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.731 -5.015 8.663 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.171 1.171 7 C -0.549 4.549 8 H 0.062 0.938 9 C -0.014 4.014 10 H 0.041 0.959 11 C -0.141 4.141 12 C -0.164 4.164 13 C -0.066 4.066 14 N -0.302 5.302 15 C 0.275 3.725 16 O -0.425 6.425 17 C 0.310 3.690 18 O -0.386 6.386 19 N -0.312 5.312 20 C -0.088 4.088 21 C -0.025 4.025 22 O -0.294 6.294 23 C -0.002 4.002 24 H 0.131 0.869 25 C 0.313 3.687 26 N -0.391 5.391 27 O -0.449 6.449 28 C -0.035 4.035 29 C -0.005 4.005 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.249 0.751 43 H 0.149 0.851 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.842 -4.077 9.037 26.748 hybrid contribution -0.696 0.587 -0.418 1.002 sum 24.146 -3.490 8.619 25.875 Atomic orbital electron populations 1.70030 1.07939 1.27973 1.52044 1.25773 0.95237 1.02317 0.94147 0.86048 0.80245 0.80048 0.78461 1.19915 1.21448 1.17144 1.21185 0.91045 0.93195 1.49472 0.93794 1.19413 0.94124 0.96152 0.91718 0.95903 1.21487 0.94999 0.97238 1.00385 1.21931 0.95376 1.02981 0.96079 1.23354 1.03560 0.87087 0.92566 1.48482 1.08177 1.24592 1.48912 1.20339 0.88079 0.83750 0.80379 1.90491 1.72899 1.27393 1.51686 1.19874 0.87127 0.82434 0.79536 1.90304 1.70584 1.28435 1.49317 1.47957 1.07862 1.30589 1.44815 1.23600 1.02886 0.90115 0.92187 1.23262 0.79274 1.04959 0.94959 1.88081 1.20618 1.43213 1.77453 1.22282 0.91588 0.92442 0.93858 0.86921 1.20023 0.88440 0.82794 0.77421 1.43563 1.11449 1.21092 1.62977 1.90781 1.75473 1.33968 1.44646 1.22331 0.79107 1.06475 0.95578 1.22231 0.76859 1.01545 0.99876 0.92461 0.92403 0.92780 0.88038 0.92827 0.90445 0.82567 0.90115 0.84367 0.85106 0.91174 0.74767 0.75052 0.85065 0.89442 0.92117 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 2 C 0.02 1.36 5.47 84.66 0.46 1.82 16 3 Si 0.93 45.08 26.42 68.60 1.81 46.89 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.25 -11.79 5.77 99.48 0.57 -11.22 16 7 C -0.51 -27.80 8.87 25.60 0.23 -27.57 16 8 H 0.04 2.62 8.05 -2.91 -0.02 2.59 16 9 C 0.01 0.25 1.78 -11.46 -0.02 0.23 16 10 H 0.02 1.06 5.73 -2.39 -0.01 1.05 16 11 C -0.10 -3.69 5.14 30.62 0.16 -3.54 16 12 C -0.13 -3.45 6.08 30.67 0.19 -3.26 16 13 C 0.05 1.44 6.16 86.36 0.53 1.98 16 14 N -0.57 -19.07 2.98 -820.38 -2.44 -21.51 16 15 C 0.49 15.73 7.62 87.27 0.66 16.40 16 16 O -0.54 -19.82 12.59 -3.22 -0.04 -19.86 16 17 C 0.53 13.09 7.69 87.27 0.67 13.76 16 18 O -0.51 -12.07 12.49 -3.24 -0.04 -12.11 16 19 N -0.58 -11.88 3.03 -819.72 -2.48 -14.36 16 20 C 0.03 0.69 6.17 86.35 0.53 1.23 16 21 C 0.05 0.88 6.99 72.08 0.50 1.39 16 22 O -0.38 -7.83 9.92 -130.02 -1.29 -9.12 16 23 C 0.06 0.92 3.17 29.81 0.09 1.01 16 24 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 25 C 0.53 8.67 7.45 87.66 0.65 9.32 16 26 N -0.82 -5.20 8.84 -173.54 -1.53 -6.73 16 27 O -0.57 -15.50 17.35 15.93 0.28 -15.22 16 28 C 0.09 1.30 5.88 86.22 0.51 1.80 16 29 C 0.12 4.75 5.42 86.36 0.47 5.22 16 30 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.16 3.86 3.92 -75.86 -0.30 3.56 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.14 3.49 4.40 -42.54 -0.19 3.30 16 39 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.42 0.09 8.83 -92.70 -0.82 -0.73 16 42 H 0.42 1.82 8.93 -92.71 -0.83 0.99 16 43 H 0.13 1.40 7.06 -2.38 -0.02 1.38 16 44 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 45 H 0.06 2.76 5.49 -2.39 -0.01 2.75 16 46 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -76.53 361.73 -1.00 -77.52 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -1.19 Total: 11.99 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.64 Total: 19.78 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -6.16 Total: -99.87 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -1.10 Total: -56.31 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.81 Total: 46.89 kcal Total: -76.53 -1.00 -77.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118441626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.647 kcal (2) G-P(sol) polarization free energy of solvation -76.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds