Wall clock time and date at job start Tue Mar 31 2020 23:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48502 * 109.46968 * 90.00275 * 3 2 1 5 5 H 1.48499 * 109.47087 * 210.00389 * 3 2 1 6 6 H 1.48496 * 109.47117 * 330.00480 * 3 2 1 7 7 C 1.37881 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00287 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99689 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.49888 * 299.93212 * 9 7 2 11 11 C 1.53043 * 109.49888 * 179.83739 * 9 7 2 12 12 C 1.53043 * 109.53915 * 178.68437 * 11 9 7 13 13 C 1.53192 * 109.31417 * 61.36222 * 12 11 9 14 14 N 1.46926 * 108.77399 * 305.36705 * 13 12 11 15 15 C 1.34776 * 120.62947 * 233.63080 * 14 13 12 16 16 O 1.21343 * 120.00587 * 174.93027 * 15 14 13 17 17 C 1.49453 * 119.99820 * 354.92548 * 15 14 13 18 18 O 1.21350 * 119.99717 * 85.49747 * 17 15 14 19 19 N 1.34776 * 120.00133 * 265.49603 * 17 15 14 20 20 C 1.47151 * 120.98286 * 4.77012 * 19 17 15 21 21 C 1.52882 * 108.60532 * 230.49559 * 20 19 17 22 22 O 1.42960 * 109.29994 * 307.93839 * 21 20 19 23 23 C 1.42959 * 114.16797 * 62.45084 * 22 21 20 24 24 H 1.08998 * 109.51545 * 57.34187 * 23 22 21 25 25 C 1.50699 * 109.50849 * 177.49508 * 23 22 21 26 26 N 1.34780 * 119.99854 * 184.74074 * 25 23 22 27 27 O 1.21282 * 120.00373 * 4.74671 * 25 23 22 28 28 C 1.47152 * 120.98078 * 185.04881 * 19 17 15 29 29 C 1.46921 * 118.74184 * 53.61114 * 14 13 12 30 30 H 0.97003 * 119.99738 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.45470 * 298.70202 * 11 9 7 32 32 H 1.08998 * 109.45974 * 58.65597 * 11 9 7 33 33 H 1.09002 * 109.49433 * 301.41099 * 12 11 9 34 34 H 1.08999 * 109.52079 * 181.33129 * 12 11 9 35 35 H 1.08994 * 109.58357 * 185.57797 * 13 12 11 36 36 H 1.08998 * 109.70012 * 65.21964 * 13 12 11 37 37 H 1.08996 * 109.68011 * 350.27855 * 20 19 17 38 38 H 1.08997 * 109.68217 * 110.83391 * 20 19 17 39 39 H 1.08997 * 109.58081 * 187.91769 * 21 20 19 40 40 H 1.09000 * 109.40145 * 67.84682 * 21 20 19 41 41 H 0.97001 * 119.99794 * 0.02562 * 26 25 23 42 42 H 0.96999 * 120.00013 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.68656 * 249.16701 * 28 19 17 44 44 H 1.09003 * 109.68172 * 9.72105 * 28 19 17 45 45 H 1.08999 * 109.58557 * 186.60822 * 29 14 13 46 46 H 1.08998 * 109.71029 * 66.24341 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8750 -0.6812 -0.8916 11 6 4.0223 -2.6368 0.0025 12 6 5.5524 -2.6381 -0.0312 13 6 6.0873 -1.9327 1.2189 14 7 5.4866 -0.5943 1.3001 15 6 6.2632 0.5009 1.4185 16 8 5.7623 1.6058 1.3921 17 6 7.7415 0.3545 1.5824 18 8 8.4520 0.2417 0.6052 19 7 8.2855 0.3478 2.8155 20 6 7.4374 0.3784 4.0177 21 6 7.9393 1.4893 4.9404 22 8 9.3429 1.3257 5.1569 23 6 10.1346 1.4353 3.9716 24 1 9.9564 2.4030 3.5029 25 6 11.5935 1.3081 4.3273 26 7 12.5356 1.4761 3.3783 27 8 11.9198 1.0544 5.4675 28 6 9.7451 0.3159 2.9993 29 6 4.0234 -0.4723 1.2494 30 1 -0.4850 0.8401 0.0004 31 1 3.6785 -3.1414 0.9054 32 1 3.6392 -3.1598 -0.8738 33 1 5.8971 -2.1119 -0.9215 34 1 5.9153 -3.6657 -0.0526 35 1 7.1715 -1.8432 1.1522 36 1 5.8219 -2.5067 2.1067 37 1 6.4043 0.5778 3.7332 38 1 7.4982 -0.5794 4.5343 39 1 7.4150 1.4363 5.8946 40 1 7.7529 2.4576 4.4760 41 1 12.2746 1.6793 2.4664 42 1 13.4746 1.3939 3.6071 43 1 10.0422 -0.6484 3.4117 44 1 10.2394 0.4738 2.0407 45 1 3.7459 0.5807 1.2027 46 1 3.5856 -0.9266 2.1383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118441631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:02 Heat of formation + Delta-G solvation = -131.594835 kcal Electronic energy + Delta-G solvation = -31159.254135 eV Core-core repulsion = 26856.637969 eV Total energy + Delta-G solvation = -4302.616166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34522 -40.27976 -39.05350 -38.21955 -37.17259 -35.28503 -34.28631 -33.57141 -32.17871 -32.00769 -30.72033 -28.77661 -26.67168 -25.34947 -25.14195 -23.65324 -22.25656 -22.03000 -20.96602 -19.71668 -18.92965 -18.29738 -17.93117 -17.39157 -17.14128 -16.80916 -16.63229 -16.23190 -16.12105 -15.33143 -15.17257 -14.94287 -14.67636 -14.40550 -14.34305 -14.10523 -13.94097 -13.55436 -13.33798 -13.18414 -13.01589 -12.73999 -12.56229 -12.33215 -12.15379 -11.57047 -11.46883 -11.29359 -11.18275 -10.74391 -10.69030 -10.54017 -10.37584 -10.22172 -10.20428 -9.86433 -9.64171 -9.32801 -9.19412 -9.15772 -8.71738 -8.36351 -6.18363 -4.20456 1.84779 1.93707 2.16734 2.47882 2.53477 3.19341 3.28621 3.39506 3.49957 3.58667 4.01541 4.09582 4.26941 4.34037 4.36578 4.48171 4.69062 4.79884 4.88134 4.96650 5.12358 5.12765 5.19422 5.24380 5.36673 5.38133 5.62664 5.73407 5.88142 5.95917 6.00092 6.21438 6.27523 6.31915 6.44598 6.46346 6.59189 6.62717 6.64526 6.79435 7.02599 7.30447 7.42096 7.47981 7.60663 7.73370 7.96012 8.39939 8.85002 9.42569 10.93471 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003147 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.325531 B = 8893.985841 C = 9432.682190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.262 1.262 6 H -0.293 1.293 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.004 3.996 10 H 0.033 0.967 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.586 5.586 15 C 0.507 3.493 16 O -0.516 6.516 17 C 0.525 3.475 18 O -0.510 6.510 19 N -0.603 5.603 20 C 0.068 3.932 21 C 0.048 3.952 22 O -0.348 6.348 23 C 0.057 3.943 24 H 0.094 0.906 25 C 0.530 3.470 26 N -0.850 5.850 27 O -0.515 6.515 28 C 0.090 3.910 29 C 0.099 3.901 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.065 0.935 41 H 0.404 0.596 42 H 0.408 0.592 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.081 0.919 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.783 -0.504 7.651 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.221 1.221 7 C -0.555 4.555 8 H 0.097 0.903 9 C -0.016 4.016 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.320 5.320 15 C 0.288 3.712 16 O -0.391 6.391 17 C 0.308 3.692 18 O -0.383 6.383 19 N -0.340 5.340 20 C -0.055 4.055 21 C -0.030 4.030 22 O -0.266 6.266 23 C -0.005 4.005 24 H 0.111 0.889 25 C 0.312 3.688 26 N -0.416 5.416 27 O -0.389 6.389 28 C -0.033 4.033 29 C -0.020 4.020 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.233 0.767 42 H 0.240 0.760 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.099 0.901 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.784 -0.079 8.076 23.233 hybrid contribution 0.455 1.149 -0.645 1.394 sum 22.239 1.070 7.431 23.472 Atomic orbital electron populations 1.69885 1.06247 1.27232 1.49663 1.25048 0.94758 0.99046 0.94073 0.87041 0.79932 0.83600 0.78913 1.19991 1.18665 1.22056 1.20931 0.87975 0.94706 1.51853 0.90274 1.19509 0.97010 0.92288 0.92762 0.94909 1.21457 0.91791 0.98723 1.01856 1.21972 0.98592 0.99700 0.97098 1.21810 0.97107 0.82931 0.99772 1.48573 1.08685 1.05588 1.69147 1.19997 0.86407 0.85849 0.78943 1.90826 1.72916 1.24873 1.50531 1.20660 0.89707 0.75815 0.83000 1.90782 1.61839 1.47875 1.37840 1.48109 1.06667 1.73402 1.05806 1.22537 0.95720 1.01376 0.85843 1.23041 0.81142 0.97651 1.01138 1.88103 1.17035 1.93132 1.28290 1.22295 0.90131 1.00123 0.87984 0.88886 1.19875 0.86982 0.76502 0.85410 1.43745 1.09863 1.75309 1.12724 1.90798 1.82374 1.45793 1.19899 1.22205 0.80999 0.99360 1.00748 1.22848 0.74246 1.02941 1.01990 0.92404 0.92291 0.91866 0.91647 0.91211 0.91000 0.90681 0.88116 0.89054 0.86171 0.91682 0.76683 0.75978 0.89240 0.87268 0.90145 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 3 Si 0.88 22.37 24.32 -169.99 -4.13 18.23 16 4 H -0.27 -6.88 6.92 56.52 0.39 -6.49 16 5 H -0.26 -6.78 6.53 56.52 0.37 -6.41 16 6 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.52 -13.73 9.15 -34.44 -0.31 -14.04 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 10 H 0.03 0.79 7.21 -51.93 -0.37 0.42 16 11 C -0.10 -1.78 5.11 -26.69 -0.14 -1.92 16 12 C -0.14 -1.95 6.08 -26.61 -0.16 -2.11 16 13 C 0.11 1.46 6.32 -3.71 -0.02 1.43 16 14 N -0.59 -10.22 2.97 -173.28 -0.51 -10.74 16 15 C 0.51 9.11 5.52 -11.58 -0.06 9.05 16 16 O -0.52 -11.06 16.51 5.50 0.09 -10.97 16 17 C 0.52 7.82 5.61 -11.58 -0.07 7.75 16 18 O -0.51 -8.47 16.40 5.50 0.09 -8.38 16 19 N -0.60 -6.73 3.03 -173.03 -0.52 -7.26 16 20 C 0.07 0.65 6.54 -3.75 -0.02 0.63 16 21 C 0.05 0.42 6.97 37.10 0.26 0.68 16 22 O -0.35 -3.72 9.92 -55.07 -0.55 -4.27 16 23 C 0.06 0.51 3.19 -27.73 -0.09 0.42 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 25 C 0.53 4.82 7.45 -10.98 -0.08 4.74 16 26 N -0.85 -4.05 8.84 31.22 0.28 -3.77 16 27 O -0.52 -7.04 17.35 -14.28 -0.25 -7.29 16 28 C 0.09 0.79 5.87 -3.53 -0.02 0.77 16 29 C 0.10 2.06 5.12 -3.71 -0.02 2.04 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.91 6.23 -51.93 -0.32 0.59 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.10 6.40 -51.93 -0.33 0.77 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 0.98 8.83 -40.82 -0.36 0.62 16 42 H 0.41 1.47 8.93 -40.82 -0.36 1.10 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.11 0.87 7.12 -51.93 -0.37 0.50 16 45 H 0.08 1.89 2.31 -51.93 -0.12 1.77 16 46 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -36.76 366.93 -6.70 -43.46 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.49 Total: -0.08 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -1.01 Total: 11.32 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.01 Total: -47.55 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.61 Total: -30.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.76 -6.70 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118441631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.134 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds