Wall clock time and date at job start Tue Mar 31 2020 23:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48502 * 109.46968 * 90.00275 * 3 2 1 5 5 H 1.48499 * 109.47087 * 210.00389 * 3 2 1 6 6 H 1.48496 * 109.47117 * 330.00480 * 3 2 1 7 7 C 1.37881 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00287 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99689 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.49888 * 299.93212 * 9 7 2 11 11 C 1.53043 * 109.49888 * 179.83739 * 9 7 2 12 12 C 1.53043 * 109.53915 * 178.68437 * 11 9 7 13 13 C 1.53192 * 109.31417 * 61.36222 * 12 11 9 14 14 N 1.46926 * 108.77399 * 305.36705 * 13 12 11 15 15 C 1.34776 * 120.62947 * 233.63080 * 14 13 12 16 16 O 1.21343 * 120.00587 * 174.93027 * 15 14 13 17 17 C 1.49453 * 119.99820 * 354.92548 * 15 14 13 18 18 O 1.21350 * 119.99717 * 85.49747 * 17 15 14 19 19 N 1.34776 * 120.00133 * 265.49603 * 17 15 14 20 20 C 1.47151 * 120.98286 * 4.77012 * 19 17 15 21 21 C 1.52882 * 108.60532 * 230.49559 * 20 19 17 22 22 O 1.42960 * 109.29994 * 307.93839 * 21 20 19 23 23 C 1.42959 * 114.16797 * 62.45084 * 22 21 20 24 24 H 1.08998 * 109.51545 * 57.34187 * 23 22 21 25 25 C 1.50699 * 109.50849 * 177.49508 * 23 22 21 26 26 N 1.34780 * 119.99854 * 184.74074 * 25 23 22 27 27 O 1.21282 * 120.00373 * 4.74671 * 25 23 22 28 28 C 1.47152 * 120.98078 * 185.04881 * 19 17 15 29 29 C 1.46921 * 118.74184 * 53.61114 * 14 13 12 30 30 H 0.97003 * 119.99738 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.45470 * 298.70202 * 11 9 7 32 32 H 1.08998 * 109.45974 * 58.65597 * 11 9 7 33 33 H 1.09002 * 109.49433 * 301.41099 * 12 11 9 34 34 H 1.08999 * 109.52079 * 181.33129 * 12 11 9 35 35 H 1.08994 * 109.58357 * 185.57797 * 13 12 11 36 36 H 1.08998 * 109.70012 * 65.21964 * 13 12 11 37 37 H 1.08996 * 109.68011 * 350.27855 * 20 19 17 38 38 H 1.08997 * 109.68217 * 110.83391 * 20 19 17 39 39 H 1.08997 * 109.58081 * 187.91769 * 21 20 19 40 40 H 1.09000 * 109.40145 * 67.84682 * 21 20 19 41 41 H 0.97001 * 119.99794 * 0.02562 * 26 25 23 42 42 H 0.96999 * 120.00013 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.68656 * 249.16701 * 28 19 17 44 44 H 1.09003 * 109.68172 * 9.72105 * 28 19 17 45 45 H 1.08999 * 109.58557 * 186.60822 * 29 14 13 46 46 H 1.08998 * 109.71029 * 66.24341 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8750 -0.6812 -0.8916 11 6 4.0223 -2.6368 0.0025 12 6 5.5524 -2.6381 -0.0312 13 6 6.0873 -1.9327 1.2189 14 7 5.4866 -0.5943 1.3001 15 6 6.2632 0.5009 1.4185 16 8 5.7623 1.6058 1.3921 17 6 7.7415 0.3545 1.5824 18 8 8.4520 0.2417 0.6052 19 7 8.2855 0.3478 2.8155 20 6 7.4374 0.3784 4.0177 21 6 7.9393 1.4893 4.9404 22 8 9.3429 1.3257 5.1569 23 6 10.1346 1.4353 3.9716 24 1 9.9564 2.4030 3.5029 25 6 11.5935 1.3081 4.3273 26 7 12.5356 1.4761 3.3783 27 8 11.9198 1.0544 5.4675 28 6 9.7451 0.3159 2.9993 29 6 4.0234 -0.4723 1.2494 30 1 -0.4850 0.8401 0.0004 31 1 3.6785 -3.1414 0.9054 32 1 3.6392 -3.1598 -0.8738 33 1 5.8971 -2.1119 -0.9215 34 1 5.9153 -3.6657 -0.0526 35 1 7.1715 -1.8432 1.1522 36 1 5.8219 -2.5067 2.1067 37 1 6.4043 0.5778 3.7332 38 1 7.4982 -0.5794 4.5343 39 1 7.4150 1.4363 5.8946 40 1 7.7529 2.4576 4.4760 41 1 12.2746 1.6793 2.4664 42 1 13.4746 1.3939 3.6071 43 1 10.0422 -0.6484 3.4117 44 1 10.2394 0.4738 2.0407 45 1 3.7459 0.5807 1.2027 46 1 3.5856 -0.9266 2.1383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118441631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:02 Heat of formation + Delta-G solvation = -162.306454 kcal Electronic energy + Delta-G solvation = -31160.585891 eV Core-core repulsion = 26856.637969 eV Total energy + Delta-G solvation = -4303.947922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42143 -41.23789 -40.12969 -39.16520 -38.63499 -36.18855 -35.40004 -34.93986 -33.76886 -32.73531 -32.35065 -29.68492 -27.87360 -27.02921 -26.15654 -24.66420 -23.68386 -23.15534 -21.68719 -21.11453 -20.03184 -19.38305 -18.88196 -18.76199 -18.26505 -18.12364 -17.79489 -16.95604 -16.91214 -16.62192 -16.17800 -16.07963 -15.98902 -15.66121 -15.52582 -15.33251 -15.06756 -14.95941 -14.64460 -14.50569 -14.17897 -14.09034 -13.83010 -13.42431 -13.19488 -12.99768 -12.87585 -12.76941 -12.36664 -12.16847 -12.05031 -11.86239 -11.64131 -11.56045 -11.29284 -11.13875 -11.08918 -10.83347 -10.78089 -10.73636 -10.01793 -9.84709 -8.38863 -6.40952 0.75829 0.79547 1.16278 1.22473 1.29762 1.41054 1.44381 1.88963 2.04583 2.20746 2.87594 2.95465 2.97654 3.37222 3.60107 3.75229 3.80365 3.81051 3.99538 4.01394 4.04287 4.11080 4.19804 4.36593 4.40545 4.46529 4.53071 4.60669 4.62145 4.69749 4.77003 4.88549 4.91317 4.99049 5.16627 5.25098 5.49793 5.59451 5.63508 5.64731 5.68805 5.88025 6.04295 6.24900 6.30204 6.38319 6.58634 6.69208 7.18806 7.24696 8.77021 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003147 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.325531 B = 8893.985841 C = 9432.682190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.296 1.296 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.001 3.999 10 H 0.009 0.991 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.103 3.897 14 N -0.585 5.585 15 C 0.501 3.499 16 O -0.559 6.559 17 C 0.535 3.465 18 O -0.530 6.530 19 N -0.590 5.590 20 C 0.064 3.936 21 C 0.050 3.950 22 O -0.366 6.366 23 C 0.057 3.943 24 H 0.105 0.895 25 C 0.533 3.467 26 N -0.826 5.826 27 O -0.567 6.567 28 C 0.091 3.909 29 C 0.107 3.893 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.060 0.940 41 H 0.419 0.581 42 H 0.417 0.583 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.052 0.948 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.601 -1.600 8.505 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.223 1.223 7 C -0.547 4.547 8 H 0.073 0.927 9 C -0.019 4.019 10 H 0.027 0.973 11 C -0.134 4.134 12 C -0.166 4.166 13 C -0.018 4.018 14 N -0.318 5.318 15 C 0.284 3.716 16 O -0.438 6.438 17 C 0.318 3.682 18 O -0.406 6.406 19 N -0.325 5.325 20 C -0.058 4.058 21 C -0.027 4.027 22 O -0.284 6.284 23 C -0.005 4.005 24 H 0.122 0.878 25 C 0.315 3.685 26 N -0.392 5.392 27 O -0.444 6.444 28 C -0.030 4.030 29 C -0.014 4.014 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.078 0.922 41 H 0.250 0.750 42 H 0.250 0.750 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.070 0.930 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 24.660 -1.195 8.915 26.250 hybrid contribution -0.389 1.434 -0.933 1.755 sum 24.271 0.239 7.983 25.551 Atomic orbital electron populations 1.69980 1.07487 1.27885 1.52179 1.25598 0.95129 1.01516 0.94563 0.86181 0.78132 0.80976 0.78744 1.19641 1.19798 1.22323 1.21255 0.90509 0.93316 1.49618 0.92735 1.19455 0.94187 0.95589 0.92623 0.97257 1.21383 0.94498 0.95264 1.02265 1.21931 0.95614 1.02131 0.96895 1.22139 0.97878 0.81014 1.00800 1.48559 1.07331 1.07286 1.68630 1.20593 0.87918 0.85157 0.77907 1.90795 1.74162 1.26515 1.52323 1.19947 0.87830 0.76472 0.83995 1.90782 1.61505 1.49576 1.38726 1.48095 1.08000 1.71426 1.04944 1.22722 0.94757 1.03017 0.85274 1.23129 0.80613 0.97018 1.01976 1.88100 1.17788 1.93187 1.29322 1.22379 0.89904 1.00682 0.87544 0.87780 1.19937 0.87469 0.75926 0.85124 1.43585 1.09767 1.73155 1.12734 1.90783 1.83011 1.48637 1.22004 1.22404 0.79129 1.00103 1.01414 1.22360 0.76830 1.00833 1.01397 0.92320 0.91093 0.92399 0.93104 0.87073 0.89250 0.87423 0.89463 0.86637 0.84116 0.92185 0.74967 0.74974 0.87838 0.86114 0.93018 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 2 C 0.03 1.77 5.45 84.66 0.46 2.23 16 3 Si 0.93 47.85 24.32 68.60 1.67 49.52 16 4 H -0.27 -13.58 6.92 99.48 0.69 -12.90 16 5 H -0.27 -14.31 6.53 99.48 0.65 -13.66 16 6 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 7 C -0.51 -27.48 9.15 25.60 0.23 -27.25 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.05 1.84 -11.46 -0.02 0.03 16 10 H 0.01 0.45 7.21 -2.38 -0.02 0.44 16 11 C -0.10 -3.24 5.11 30.62 0.16 -3.08 16 12 C -0.13 -3.25 6.08 30.67 0.19 -3.06 16 13 C 0.10 2.42 6.32 86.36 0.55 2.97 16 14 N -0.59 -19.34 2.97 -820.50 -2.44 -21.78 16 15 C 0.50 17.40 5.52 87.27 0.48 17.89 16 16 O -0.56 -23.97 16.51 -3.23 -0.05 -24.02 16 17 C 0.53 14.72 5.61 87.27 0.49 15.21 16 18 O -0.53 -16.36 16.40 -3.25 -0.05 -16.41 16 19 N -0.59 -11.50 3.03 -819.72 -2.48 -13.98 16 20 C 0.06 1.06 6.54 86.22 0.56 1.63 16 21 C 0.05 0.76 6.97 71.94 0.50 1.26 16 22 O -0.37 -7.04 9.92 -130.01 -1.29 -8.33 16 23 C 0.06 0.87 3.19 29.95 0.10 0.97 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 C 0.53 8.58 7.45 87.66 0.65 9.23 16 26 N -0.83 -5.68 8.84 -173.53 -1.53 -7.21 16 27 O -0.57 -14.82 17.35 15.93 0.28 -14.54 16 28 C 0.09 1.31 5.87 86.35 0.51 1.81 16 29 C 0.11 4.36 5.12 86.37 0.44 4.80 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.88 6.23 -2.39 -0.01 1.86 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.74 6.40 -2.39 -0.02 1.73 16 38 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.42 0.69 8.83 -92.71 -0.82 -0.12 16 42 H 0.42 1.95 8.93 -92.71 -0.83 1.12 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.12 1.49 7.12 -2.39 -0.02 1.47 16 45 H 0.05 2.43 2.31 -2.39 -0.01 2.43 16 46 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -82.80 366.93 -0.99 -83.79 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -0.68 Total: 5.05 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: 5.30 Total: 24.64 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -6.15 Total: -99.69 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: -1.12 Total: -63.30 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.67 Total: 49.52 kcal Total: -82.80 -0.99 -83.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118441631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.516 kcal (2) G-P(sol) polarization free energy of solvation -82.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds