Wall clock time and date at job start Tue Mar 31 2020 22:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35495 * 126.98340 * 2 1 4 4 C 1.50701 * 126.34173 * 359.76832 * 3 2 1 5 5 N 1.46906 * 109.46547 * 90.00772 * 4 3 2 6 6 C 1.46901 * 110.99654 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47337 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47693 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00176 * 179.97438 * 8 7 6 10 10 O 1.21272 * 120.00202 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99568 * 180.02562 * 9 8 7 12 12 S 1.81009 * 109.46949 * 179.97438 * 11 9 8 13 13 C 1.76202 * 99.99818 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00335 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99509 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00354 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99708 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46744 * 60.00338 * 17 15 13 19 19 H 1.48496 * 109.46950 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47212 * 300.00238 * 17 15 13 21 21 N 1.30520 * 107.30888 * 179.73983 * 3 2 1 22 22 N 1.28595 * 109.67181 * 359.97438 * 21 3 2 23 23 C 1.30528 * 109.67405 * 0.02562 * 22 21 3 24 24 C 1.50701 * 126.34540 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.50138 * 8.74495 * 24 23 22 26 26 C 1.52998 * 117.49887 * 300.08360 * 24 23 22 27 27 H 1.08993 * 109.47075 * 90.02317 * 1 2 3 28 28 H 1.08993 * 109.47609 * 210.03067 * 1 2 3 29 29 H 1.09008 * 109.46926 * 330.02896 * 1 2 3 30 30 H 1.09005 * 109.47105 * 210.00190 * 4 3 2 31 31 H 1.08997 * 109.47618 * 330.00482 * 4 3 2 32 32 H 1.00898 * 110.99783 * 303.94590 * 5 4 3 33 33 H 1.09003 * 109.47051 * 299.99809 * 6 5 4 34 34 H 1.08994 * 109.47444 * 59.99508 * 6 5 4 35 35 H 1.09003 * 109.46964 * 299.99948 * 7 6 5 36 36 H 1.08999 * 109.47205 * 59.99936 * 7 6 5 37 37 H 0.97005 * 119.99261 * 359.97438 * 8 7 6 38 38 H 1.08998 * 109.47208 * 299.99321 * 11 9 8 39 39 H 1.08994 * 109.47635 * 59.99659 * 11 9 8 40 40 H 0.96997 * 120.00194 * 179.97438 * 16 15 13 41 41 H 1.08997 * 115.54894 * 154.41456 * 24 23 22 42 42 H 1.09003 * 117.49964 * 0.02562 * 25 24 23 43 43 H 1.09000 * 117.49877 * 145.01826 * 25 24 23 44 44 H 1.08998 * 117.50244 * 214.97727 * 26 24 23 45 45 H 1.08999 * 117.49963 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 6 1.8477 2.5260 -0.0049 5 7 1.7029 2.9984 1.3786 6 6 1.2820 4.4054 1.4130 7 6 1.1417 4.8603 2.8670 8 7 0.7225 6.2636 2.9015 9 6 0.5337 6.8817 4.0842 10 8 0.7112 6.2763 5.1199 11 6 0.1020 8.3251 4.1195 12 16 -0.0654 8.8628 5.8397 13 6 -0.5635 10.5345 5.5905 14 1 -0.6746 10.9213 4.5884 15 6 -0.8121 11.3546 6.6825 16 7 -0.6763 10.8834 7.9040 17 14 -1.3395 13.1271 6.4184 18 1 -2.6106 13.1562 5.6510 19 1 -1.5412 13.7848 7.7344 20 1 -0.2867 13.8491 5.6598 21 7 3.5091 0.6429 0.0057 22 7 3.5090 -0.6430 0.0097 23 6 2.2799 -1.0824 0.0063 24 6 1.8475 -2.5261 0.0086 25 6 2.9290 -3.5871 0.2219 26 6 2.3009 -3.4012 -1.1616 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8896 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 2.5977 3.1282 -0.5178 31 1 0.8925 2.6175 -0.5219 32 1 1.0605 2.4157 1.8942 33 1 2.0284 5.0203 0.9100 34 1 0.3231 4.5103 0.9057 35 1 0.3951 4.2453 3.3696 36 1 2.1004 4.7553 3.3748 37 1 0.5809 6.7479 2.0730 38 1 0.8487 8.9401 3.6173 39 1 -0.8566 8.4302 3.6114 40 1 -0.8497 11.4566 8.6670 41 1 0.8614 -2.7207 0.4301 42 1 3.9532 -3.2411 0.3610 43 1 2.6541 -4.4800 0.7834 44 1 1.6133 -4.1719 -1.5098 45 1 2.9116 -2.9327 -1.9334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123788084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:13 Heat of formation + Delta-G solvation = 71.437022 kcal Electronic energy + Delta-G solvation = -24986.330577 eV Core-core repulsion = 21167.564155 eV Total energy + Delta-G solvation = -3818.766422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.57157 -39.24609 -37.81363 -37.17653 -35.52455 -34.40181 -32.43615 -31.64263 -29.93820 -28.39094 -27.91972 -25.60475 -25.26723 -24.55404 -22.93838 -22.49985 -21.31001 -20.67241 -20.40284 -17.90604 -17.67059 -17.00462 -16.75305 -16.34382 -16.26106 -15.90922 -15.46740 -15.04597 -14.94588 -14.81135 -14.54953 -14.05459 -13.99989 -13.76905 -13.53133 -13.17705 -13.10560 -12.61811 -12.52045 -12.29893 -12.10314 -11.93136 -11.78991 -11.59052 -11.51685 -11.14871 -11.05464 -11.04448 -10.77925 -10.66084 -10.61780 -9.83626 -9.47987 -9.35281 -9.07319 -9.04397 -8.93598 -8.25044 -6.51066 -6.22135 -3.93101 1.22809 1.89441 2.37773 2.94611 3.07455 3.22874 3.25037 3.28491 3.30787 3.51612 3.65919 3.79189 3.94373 4.02836 4.19567 4.19803 4.25758 4.34698 4.37890 4.46734 4.58237 4.67912 4.74947 4.89238 5.08317 5.09706 5.12908 5.14195 5.16270 5.30322 5.40963 5.51569 5.57956 5.63926 5.69263 5.73384 5.82616 5.87965 6.11756 6.24508 6.38079 6.54514 6.70286 7.58358 7.65325 8.34195 8.38282 8.58124 9.22929 10.85234 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.040542 B = 0.001363 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.473697 B =20531.227834 C =20679.497853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.471 5.471 3 C 0.174 3.826 4 C 0.151 3.849 5 N -0.677 5.677 6 C 0.051 3.949 7 C 0.123 3.877 8 N -0.739 5.739 9 C 0.532 3.468 10 O -0.515 6.515 11 C -0.153 4.153 12 S -0.060 6.060 13 C -0.537 4.537 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 N -0.269 5.269 22 N -0.291 5.291 23 C 0.208 3.792 24 C -0.092 4.092 25 C -0.147 4.147 26 C -0.157 4.157 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.343 0.657 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 -26.613 -22.890 35.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.162 5.162 3 C -0.093 4.093 4 C 0.020 3.980 5 N -0.310 5.310 6 C -0.078 4.078 7 C -0.002 4.002 8 N -0.395 5.395 9 C 0.318 3.682 10 O -0.389 6.389 11 C -0.304 4.304 12 S 0.167 5.833 13 C -0.685 4.685 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 N -0.109 5.109 22 N -0.131 5.131 23 C -0.058 4.058 24 C -0.113 4.113 25 C -0.185 4.185 26 C -0.195 4.195 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.083 -27.409 -20.868 34.512 hybrid contribution -3.118 2.027 -1.986 4.216 sum -1.035 -25.382 -22.855 34.171 Atomic orbital electron populations 1.22127 0.75478 1.05301 1.04333 1.45911 1.08948 1.06380 1.54974 1.24538 0.87418 0.91507 1.05804 1.20178 1.01039 0.85866 0.90903 1.60202 1.55303 1.03255 1.12221 1.22126 0.99637 0.88897 0.97125 1.21108 1.01396 0.82397 0.95293 1.45882 1.72370 1.12301 1.08910 1.20304 0.76343 0.88600 0.82921 1.90713 1.49057 1.66661 1.32467 1.23529 1.03972 0.94319 1.08560 1.85421 1.89161 1.12034 0.96707 1.22828 1.53571 0.96663 0.95477 0.90968 1.24987 0.94919 0.99181 0.94418 1.70005 1.45802 1.36599 0.97857 0.86227 0.79108 0.82550 0.77628 1.19965 1.20793 1.19915 1.74300 1.16963 1.02720 1.16940 1.74261 1.16773 1.03226 1.18881 1.23730 0.87275 0.90497 1.04346 1.20106 1.00581 0.83391 1.07176 1.23053 0.98489 0.98169 0.98748 1.23089 1.03437 1.01020 0.92004 0.89689 0.88741 0.89245 0.87001 0.93059 0.83876 0.89535 0.94181 0.91849 0.90423 0.76861 0.89129 0.89238 0.92106 0.85931 0.87043 0.87677 0.87735 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 10.71 59.85 0.64 0.82 16 2 N -0.47 -3.41 3.15 -118.00 -0.37 -3.78 16 3 C 0.17 1.63 7.54 -154.99 -1.17 0.46 16 4 C 0.15 1.00 5.86 -4.97 -0.03 0.97 16 5 N -0.68 -5.15 6.49 -115.06 -0.75 -5.90 16 6 C 0.05 0.37 5.80 -3.83 -0.02 0.34 16 7 C 0.12 1.34 5.93 -4.04 -0.02 1.32 16 8 N -0.74 -9.26 5.56 -60.30 -0.33 -9.59 16 9 C 0.53 9.76 7.85 -10.99 -0.09 9.67 16 10 O -0.52 -11.71 15.86 5.56 0.09 -11.63 16 11 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 12 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 13 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 14 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 16 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 17 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 N -0.27 -3.52 12.21 32.80 0.40 -3.12 16 22 N -0.29 -3.65 11.83 32.80 0.39 -3.26 16 23 C 0.21 1.87 7.55 -154.98 -1.17 0.70 16 24 C -0.09 -0.51 5.97 -91.77 -0.55 -1.05 16 25 C -0.15 -0.76 10.15 -26.69 -0.27 -1.03 16 26 C -0.16 -0.70 10.24 -26.69 -0.27 -0.98 16 27 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.09 0.10 7.37 -51.93 -0.38 -0.28 16 29 H 0.09 0.13 7.82 -51.92 -0.41 -0.27 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.21 7.86 -51.93 -0.41 -0.20 16 32 H 0.34 2.37 8.72 -39.29 -0.34 2.03 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.12 0.38 7.48 -51.93 -0.39 0.00 16 42 H 0.11 0.78 7.92 -51.93 -0.41 0.37 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -38.99 399.84 -10.46 -49.45 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.88 Total: -0.72 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.53 Total: -4.50 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.07 Total: -51.04 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.99 -10.46 -49.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123788084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.887 kcal (2) G-P(sol) polarization free energy of solvation -38.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds