Wall clock time and date at job start Tue Mar 31 2020 22:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35495 * 126.98340 * 2 1 4 4 C 1.50701 * 126.34173 * 359.76832 * 3 2 1 5 5 N 1.46906 * 109.46547 * 90.00772 * 4 3 2 6 6 C 1.46901 * 110.99654 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47337 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47693 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00176 * 179.97438 * 8 7 6 10 10 O 1.21272 * 120.00202 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99568 * 180.02562 * 9 8 7 12 12 S 1.81009 * 109.46949 * 179.97438 * 11 9 8 13 13 C 1.76202 * 99.99818 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00335 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99509 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00354 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99708 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46744 * 60.00338 * 17 15 13 19 19 H 1.48496 * 109.46950 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47212 * 300.00238 * 17 15 13 21 21 N 1.30520 * 107.30888 * 179.73983 * 3 2 1 22 22 N 1.28595 * 109.67181 * 359.97438 * 21 3 2 23 23 C 1.30528 * 109.67405 * 0.02562 * 22 21 3 24 24 C 1.50701 * 126.34540 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.50138 * 8.74495 * 24 23 22 26 26 C 1.52998 * 117.49887 * 300.08360 * 24 23 22 27 27 H 1.08993 * 109.47075 * 90.02317 * 1 2 3 28 28 H 1.08993 * 109.47609 * 210.03067 * 1 2 3 29 29 H 1.09008 * 109.46926 * 330.02896 * 1 2 3 30 30 H 1.09005 * 109.47105 * 210.00190 * 4 3 2 31 31 H 1.08997 * 109.47618 * 330.00482 * 4 3 2 32 32 H 1.00898 * 110.99783 * 303.94590 * 5 4 3 33 33 H 1.09003 * 109.47051 * 299.99809 * 6 5 4 34 34 H 1.08994 * 109.47444 * 59.99508 * 6 5 4 35 35 H 1.09003 * 109.46964 * 299.99948 * 7 6 5 36 36 H 1.08999 * 109.47205 * 59.99936 * 7 6 5 37 37 H 0.97005 * 119.99261 * 359.97438 * 8 7 6 38 38 H 1.08998 * 109.47208 * 299.99321 * 11 9 8 39 39 H 1.08994 * 109.47635 * 59.99659 * 11 9 8 40 40 H 0.96997 * 120.00194 * 179.97438 * 16 15 13 41 41 H 1.08997 * 115.54894 * 154.41456 * 24 23 22 42 42 H 1.09003 * 117.49964 * 0.02562 * 25 24 23 43 43 H 1.09000 * 117.49877 * 145.01826 * 25 24 23 44 44 H 1.08998 * 117.50244 * 214.97727 * 26 24 23 45 45 H 1.08999 * 117.49963 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 6 1.8477 2.5260 -0.0049 5 7 1.7029 2.9984 1.3786 6 6 1.2820 4.4054 1.4130 7 6 1.1417 4.8603 2.8670 8 7 0.7225 6.2636 2.9015 9 6 0.5337 6.8817 4.0842 10 8 0.7112 6.2763 5.1199 11 6 0.1020 8.3251 4.1195 12 16 -0.0654 8.8628 5.8397 13 6 -0.5635 10.5345 5.5905 14 1 -0.6746 10.9213 4.5884 15 6 -0.8121 11.3546 6.6825 16 7 -0.6763 10.8834 7.9040 17 14 -1.3395 13.1271 6.4184 18 1 -2.6106 13.1562 5.6510 19 1 -1.5412 13.7848 7.7344 20 1 -0.2867 13.8491 5.6598 21 7 3.5091 0.6429 0.0057 22 7 3.5090 -0.6430 0.0097 23 6 2.2799 -1.0824 0.0063 24 6 1.8475 -2.5261 0.0086 25 6 2.9290 -3.5871 0.2219 26 6 2.3009 -3.4012 -1.1616 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8896 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 2.5977 3.1282 -0.5178 31 1 0.8925 2.6175 -0.5219 32 1 1.0605 2.4157 1.8942 33 1 2.0284 5.0203 0.9100 34 1 0.3231 4.5103 0.9057 35 1 0.3951 4.2453 3.3696 36 1 2.1004 4.7553 3.3748 37 1 0.5809 6.7479 2.0730 38 1 0.8487 8.9401 3.6173 39 1 -0.8566 8.4302 3.6114 40 1 -0.8497 11.4566 8.6670 41 1 0.8614 -2.7207 0.4301 42 1 3.9532 -3.2411 0.3610 43 1 2.6541 -4.4800 0.7834 44 1 1.6133 -4.1719 -1.5098 45 1 2.9116 -2.9327 -1.9334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123788084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:13 Heat of formation + Delta-G solvation = 42.110702 kcal Electronic energy + Delta-G solvation = -24987.602261 eV Core-core repulsion = 21167.564155 eV Total energy + Delta-G solvation = -3820.038106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.20950 -40.62605 -38.27975 -37.84060 -36.14231 -35.44319 -34.57396 -32.48353 -31.16357 -29.16368 -28.48895 -27.64595 -26.06904 -25.12931 -23.30472 -23.23819 -21.95485 -21.73147 -21.18137 -19.83837 -18.17627 -17.88754 -17.58664 -17.35683 -17.15149 -16.86779 -16.63048 -16.49013 -15.94294 -15.79755 -15.40364 -15.10821 -14.78814 -14.65212 -14.37518 -14.24582 -13.94130 -13.69312 -13.53000 -13.16095 -12.98050 -12.86194 -12.79389 -12.63451 -12.55954 -12.46294 -12.37748 -12.03358 -11.73915 -11.55479 -11.27573 -11.12775 -11.11864 -11.00263 -10.26683 -10.14311 -10.03122 -9.56181 -8.66143 -8.33473 -6.11953 0.64488 1.27207 1.42730 1.44952 1.47884 1.56838 1.61389 1.69455 2.21646 2.29092 2.88958 3.00748 3.07739 3.23775 3.34112 3.42926 3.64167 3.75213 3.84535 3.92041 4.01727 4.04673 4.05593 4.12588 4.30444 4.32668 4.40062 4.48554 4.52743 4.58781 4.67485 4.77065 4.85436 4.90337 4.91293 4.93986 5.07758 5.16292 5.25913 5.38699 5.42644 5.72590 5.89226 6.17102 6.20572 6.50962 7.07711 7.25285 7.69271 8.75506 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.040542 B = 0.001363 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.473697 B =20531.227834 C =20679.497853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.466 5.466 3 C 0.175 3.825 4 C 0.157 3.843 5 N -0.695 5.695 6 C 0.067 3.933 7 C 0.124 3.876 8 N -0.709 5.709 9 C 0.533 3.467 10 O -0.568 6.568 11 C -0.128 4.128 12 S -0.156 6.156 13 C -0.547 4.547 14 H 0.084 0.916 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 0.998 3.002 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.262 1.262 21 N -0.326 5.326 22 N -0.342 5.342 23 C 0.207 3.793 24 C -0.097 4.097 25 C -0.155 4.155 26 C -0.145 4.145 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.347 0.653 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.419 0.581 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.271 0.729 41 H 0.154 0.846 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -26.454 -25.686 36.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.156 5.156 3 C -0.094 4.094 4 C 0.027 3.973 5 N -0.329 5.329 6 C -0.062 4.062 7 C -0.001 4.001 8 N -0.364 5.364 9 C 0.319 3.681 10 O -0.446 6.446 11 C -0.280 4.280 12 S 0.071 5.929 13 C -0.695 4.695 14 H 0.103 0.897 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.187 1.187 21 N -0.166 5.166 22 N -0.182 5.182 23 C -0.061 4.061 24 C -0.117 4.117 25 C -0.192 4.192 26 C -0.183 4.183 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.257 0.743 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.322 -27.262 -23.745 36.154 hybrid contribution -2.358 1.847 -1.209 3.230 sum -2.680 -25.415 -24.953 35.718 Atomic orbital electron populations 1.22550 0.72521 1.07006 1.06075 1.46140 1.10536 1.05166 1.53771 1.24968 0.86968 0.92983 1.04449 1.20244 1.02560 0.84048 0.90480 1.60093 1.56051 1.03555 1.13162 1.21969 1.01474 0.88623 0.94156 1.21172 0.99815 0.81037 0.98057 1.45548 1.69979 1.12947 1.07949 1.20086 0.76240 0.88033 0.83768 1.90703 1.51746 1.67495 1.34671 1.23366 1.06006 0.95537 1.03052 1.85629 1.89594 1.13258 1.04382 1.23184 1.53389 0.96710 0.96214 0.89750 1.26128 0.94657 1.04378 0.93922 1.70180 1.47126 1.38550 0.98985 0.85007 0.79218 0.75999 0.77788 1.18531 1.20511 1.18680 1.74165 1.19610 1.03393 1.19447 1.74134 1.19306 1.03474 1.21252 1.24321 0.86812 0.92237 1.02740 1.20412 1.01765 0.81441 1.08106 1.23072 0.97232 0.98946 0.99984 1.23118 1.03201 1.00926 0.91040 0.87861 0.86932 0.87798 0.87351 0.89491 0.83451 0.88809 0.91158 0.92299 0.92960 0.74337 0.87087 0.86823 0.92021 0.82869 0.89796 0.85399 0.84853 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.11 10.71 127.77 1.37 1.48 16 2 N -0.47 -6.07 3.15 -527.25 -1.66 -7.73 16 3 C 0.18 3.17 7.54 137.98 1.04 4.21 16 4 C 0.16 1.74 5.86 85.56 0.50 2.24 16 5 N -0.69 -9.18 6.49 -517.93 -3.36 -12.54 16 6 C 0.07 0.74 5.80 86.30 0.50 1.24 16 7 C 0.12 2.51 5.93 86.38 0.51 3.02 16 8 N -0.71 -16.10 5.56 -463.08 -2.57 -18.68 16 9 C 0.53 19.07 7.85 87.66 0.69 19.76 16 10 O -0.57 -26.34 15.86 -3.01 -0.05 -26.38 16 11 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 12 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 13 C -0.55 -30.96 9.50 67.95 0.65 -30.31 16 14 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 15 C 0.01 0.79 5.49 84.86 0.47 1.25 16 16 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 17 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 N -0.33 -8.94 12.21 -50.15 -0.61 -9.55 16 22 N -0.34 -9.08 11.83 -50.15 -0.59 -9.67 16 23 C 0.21 3.66 7.55 137.98 1.04 4.70 16 24 C -0.10 -0.93 5.97 -11.54 -0.07 -0.99 16 25 C -0.15 -1.53 10.15 30.62 0.31 -1.22 16 26 C -0.14 -1.11 10.24 30.62 0.31 -0.79 16 27 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.11 -0.17 7.37 -2.39 -0.02 -0.19 16 29 H 0.10 -0.08 7.82 -2.38 -0.02 -0.10 16 30 H 0.11 1.28 8.14 -2.38 -0.02 1.27 16 31 H 0.09 0.35 7.86 -2.39 -0.02 0.33 16 32 H 0.35 4.09 8.72 -89.70 -0.78 3.31 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.42 6.09 8.47 -92.70 -0.79 5.30 16 38 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 39 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.15 0.46 7.48 -2.39 -0.02 0.45 16 42 H 0.08 1.31 7.92 -2.39 -0.02 1.29 16 43 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -91.48 399.84 -0.48 -91.96 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.55 Total: 12.78 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 7.76 Total: 0.12 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -8.51 Total: -113.86 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -91.48 -0.48 -91.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123788084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.070 kcal (2) G-P(sol) polarization free energy of solvation -91.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds