Wall clock time and date at job start Tue Mar 31 2020 22:34:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 N 1.40447 * 126.82323 * 2 1
4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1
5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2
6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3
7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3
8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2
9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3
10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4
11 11 N 1.46897 * 109.47110 * 89.98067 * 10 9 8
12 12 C 1.46898 * 111.00278 * 180.02562 * 11 10 9
13 13 C 1.52994 * 109.47347 * 179.97438 * 12 11 10
14 14 N 1.46507 * 109.47119 * 179.97438 * 13 12 11
15 15 C 1.34776 * 119.99596 * 180.02562 * 14 13 12
16 16 O 1.21275 * 120.00588 * 0.02562 * 15 14 13
17 17 C 1.50703 * 119.99540 * 180.02562 * 15 14 13
18 18 S 1.80995 * 109.46957 * 179.97438 * 17 15 14
19 19 C 1.76202 * 99.99884 * 179.97438 * 18 17 15
20 20 H 1.07994 * 120.00211 * 359.97438 * 19 18 17
21 21 C 1.38798 * 119.99963 * 180.02562 * 19 18 17
22 22 N 1.31637 * 120.00143 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 120.00153 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.46775 * 89.99849 * 23 21 19
25 25 H 1.48500 * 109.47144 * 209.99486 * 23 21 19
26 26 H 1.48495 * 109.46849 * 329.99995 * 23 21 19
27 27 H 1.09002 * 109.47241 * 90.02243 * 1 2 3
28 28 H 1.08996 * 109.47088 * 210.02752 * 1 2 3
29 29 H 1.09003 * 109.47136 * 330.02773 * 1 2 3
30 30 H 1.09001 * 115.54690 * 154.39168 * 5 4 3
31 31 H 1.08999 * 117.49922 * 359.97438 * 6 5 4
32 32 H 1.09000 * 117.49232 * 145.01679 * 6 5 4
33 33 H 1.08995 * 117.49902 * 214.98202 * 7 5 4
34 34 H 1.09002 * 117.49700 * 359.97241 * 7 5 4
35 35 H 1.09003 * 109.47186 * 209.97910 * 10 9 8
36 36 H 1.08998 * 109.47075 * 329.97660 * 10 9 8
37 37 H 1.00898 * 110.99619 * 303.95177 * 11 10 9
38 38 H 1.09006 * 109.46896 * 299.99733 * 12 11 10
39 39 H 1.09004 * 109.47126 * 59.99540 * 12 11 10
40 40 H 1.08995 * 109.47575 * 299.99750 * 13 12 11
41 41 H 1.09004 * 109.47095 * 59.99873 * 13 12 11
42 42 H 0.96999 * 119.99613 * 0.02562 * 14 13 12
43 43 H 1.09006 * 109.47194 * 299.99867 * 17 15 14
44 44 H 1.09004 * 109.47114 * 59.99848 * 17 15 14
45 45 H 0.97000 * 119.99575 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3068 1.1243 0.0000
4 6 3.5349 0.6764 0.0006
5 6 4.7777 1.5288 0.0013
6 6 4.6015 3.0346 0.2074
7 6 4.9764 2.4893 -1.1729
8 7 3.5096 -0.6557 0.0003
9 6 2.2707 -1.0761 0.0002
10 6 1.8246 -2.5156 -0.0006
11 7 1.6803 -2.9843 1.3841
12 6 1.2462 -4.3871 1.4226
13 6 1.1079 -4.8385 2.8779
14 7 0.6744 -6.2374 2.9162
15 6 0.4847 -6.8518 4.1006
16 8 0.6724 -6.2467 5.1347
17 6 0.0394 -8.2910 4.1400
18 16 -0.1244 -8.8249 5.8617
19 6 -0.6412 -10.4916 5.6173
20 1 -0.7624 -10.8781 4.6162
21 6 -0.8936 -11.3075 6.7115
22 7 -0.7463 -10.8363 7.9317
23 14 -1.4408 -13.0747 6.4524
24 1 -0.2483 -13.9570 6.3834
25 1 -2.3039 -13.4967 7.5848
26 1 -2.2050 -13.1752 5.1832
27 1 -0.3634 -0.0004 -1.0277
28 1 -0.3633 -0.8897 0.5142
29 1 -0.3633 0.8903 0.5134
30 1 5.6667 1.0633 0.4268
31 1 3.5866 3.4088 0.3420
32 1 5.3748 3.5597 0.7680
33 1 5.9961 2.6559 -1.5198
34 1 4.2084 2.5044 -1.9462
35 1 0.8667 -2.5989 -0.5141
36 1 2.5669 -3.1257 -0.5152
37 1 2.5380 -2.8572 1.9000
38 1 0.2844 -4.4838 0.9188
39 1 1.9848 -5.0100 0.9180
40 1 2.0698 -4.7420 3.3813
41 1 0.3694 -4.2157 3.3828
42 1 0.5239 -6.7213 2.0891
43 1 -0.9224 -8.3877 3.6362
44 1 0.7781 -8.9139 3.6355
45 1 -0.9223 -11.4066 8.6963
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001123792090.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:26
Heat of formation + Delta-G solvation = 79.404447 kcal
Electronic energy + Delta-G solvation = -24868.957489 eV
Core-core repulsion = 21050.536561 eV
Total energy + Delta-G solvation = -3818.420928 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.55420 -39.24676 -37.78614 -37.04597 -34.52833 -34.18515 -32.43825 -31.97344
-30.12914 -28.49464 -27.66022 -25.61046 -25.26137 -24.12330 -22.81682 -22.48632
-20.93912 -20.40170 -20.29378 -17.90905 -17.52962 -16.68641 -16.55205 -16.20026
-16.13012 -15.78250 -15.39055 -15.03850 -14.82156 -14.79019 -14.54368 -14.02423
-13.84174 -13.67661 -13.54623 -13.13688 -12.90200 -12.56514 -12.51785 -12.37259
-12.10430 -11.94354 -11.84651 -11.54076 -11.31506 -11.07264 -11.03530 -10.95997
-10.77477 -10.35913 -10.12984 -9.83016 -9.61658 -9.45262 -9.11410 -9.08187
-8.94053 -8.24892 -6.51295 -6.22638 -3.93455 1.12278 1.87700 2.31174
2.93234 3.07116 3.21567 3.23659 3.28922 3.35347 3.49523 3.61704
3.93850 4.06970 4.07341 4.19348 4.41860 4.48784 4.53681 4.62835
4.67928 4.73442 4.75560 4.86369 5.00822 5.09472 5.12573 5.15576
5.18159 5.20438 5.37627 5.57875 5.64799 5.68129 5.70940 5.80647
5.87464 5.90686 6.02599 6.11463 6.21961 6.38505 6.54104 6.70620
7.58390 7.64935 7.73398 8.34079 8.57799 9.22662 10.84780
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.035083 B = 0.001369 C = 0.001355
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 797.909901 B =20447.097780 C =20665.370554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.094 3.906
2 N -0.367 5.367
3 N -0.315 5.315
4 C 0.254 3.746
5 C -0.072 4.072
6 C -0.160 4.160
7 C -0.159 4.159
8 N -0.534 5.534
9 C 0.283 3.717
10 C 0.139 3.861
11 N -0.682 5.682
12 C 0.051 3.949
13 C 0.123 3.877
14 N -0.739 5.739
15 C 0.532 3.468
16 O -0.515 6.515
17 C -0.153 4.153
18 S -0.060 6.060
19 C -0.536 4.536
20 H 0.073 0.927
21 C 0.074 3.926
22 N -0.867 5.867
23 Si 0.919 3.081
24 H -0.277 1.277
25 H -0.282 1.282
26 H -0.272 1.272
27 H 0.079 0.921
28 H 0.101 0.899
29 H 0.093 0.907
30 H 0.131 0.869
31 H 0.103 0.897
32 H 0.104 0.896
33 H 0.105 0.895
34 H 0.095 0.905
35 H 0.098 0.902
36 H 0.074 0.926
37 H 0.355 0.645
38 H 0.083 0.917
39 H 0.044 0.956
40 H 0.065 0.935
41 H 0.075 0.925
42 H 0.398 0.602
43 H 0.090 0.910
44 H 0.090 0.910
45 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.202 23.637 -22.805 33.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.157 5.157
3 N -0.144 5.144
4 C -0.027 4.027
5 C -0.093 4.093
6 C -0.198 4.198
7 C -0.198 4.198
8 N -0.262 5.262
9 C 0.006 3.994
10 C 0.007 3.993
11 N -0.316 5.316
12 C -0.079 4.079
13 C -0.002 4.002
14 N -0.395 5.395
15 C 0.318 3.682
16 O -0.389 6.389
17 C -0.304 4.304
18 S 0.166 5.834
19 C -0.685 4.685
20 H 0.091 0.909
21 C -0.135 4.135
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.203 1.203
25 H -0.207 1.207
26 H -0.197 1.197
27 H 0.097 0.903
28 H 0.119 0.881
29 H 0.111 0.889
30 H 0.149 0.851
31 H 0.121 0.879
32 H 0.122 0.878
33 H 0.123 0.877
34 H 0.114 0.886
35 H 0.116 0.884
36 H 0.092 0.908
37 H 0.175 0.825
38 H 0.101 0.899
39 H 0.062 0.938
40 H 0.084 0.916
41 H 0.094 0.906
42 H 0.231 0.769
43 H 0.108 0.892
44 H 0.108 0.892
45 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 5.828 25.408 -20.795 33.346
hybrid contribution -0.123 -2.689 -2.014 3.362
sum 5.705 22.719 -22.809 32.695
Atomic orbital electron populations
1.22035 0.73361 1.05692 1.03711 1.50130 1.08043 1.03627 1.53895
1.77968 1.01355 1.07726 1.27354 1.23072 0.92453 0.89157 0.98032
1.20071 0.93418 0.89951 1.05844 1.23051 1.03857 0.93576 0.99289
1.23037 1.03232 1.01743 0.91757 1.70262 1.19641 1.11043 1.25252
1.24045 0.85899 0.92444 0.97030 1.20327 1.01859 0.85471 0.91634
1.60328 1.39411 1.20238 1.11635 1.22121 1.01241 0.87379 0.97129
1.21104 1.01197 0.82638 0.95256 1.45880 1.71996 1.12698 1.08894
1.20304 0.76425 0.88532 0.82903 1.90714 1.49087 1.66455 1.32638
1.23530 1.03939 0.94363 1.08551 1.85424 1.88662 1.12616 0.96659
1.22867 1.53052 0.97033 0.95504 0.90918 1.24992 0.94960 0.99162
0.94426 1.70021 1.45871 1.36536 0.97831 0.86168 0.78627 0.82696
0.78005 1.20266 1.20739 1.19704 0.90297 0.88070 0.88852 0.85098
0.87858 0.87765 0.87704 0.88649 0.88426 0.90816 0.82540 0.89861
0.93757 0.91619 0.90631 0.76857 0.89171 0.89195 0.92167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.47 11.16 59.85 0.67 1.14 16
2 N -0.37 -3.33 4.04 -65.09 -0.26 -3.59 16
3 N -0.32 -3.50 12.24 32.42 0.40 -3.10 16
4 C 0.25 2.79 7.69 -156.85 -1.21 1.58 16
5 C -0.07 -0.59 6.33 -91.77 -0.58 -1.17 16
6 C -0.16 -1.03 10.14 -26.69 -0.27 -1.30 16
7 C -0.16 -0.99 10.24 -26.70 -0.27 -1.26 16
8 N -0.53 -6.05 11.19 -8.16 -0.09 -6.14 16
9 C 0.28 2.60 7.50 -155.70 -1.17 1.44 16
10 C 0.14 0.85 5.81 -4.98 -0.03 0.82 16
11 N -0.68 -4.78 6.49 -115.06 -0.75 -5.53 16
12 C 0.05 0.34 5.80 -3.83 -0.02 0.31 16
13 C 0.12 1.30 5.93 -4.04 -0.02 1.27 16
14 N -0.74 -9.05 5.56 -60.29 -0.33 -9.39 16
15 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16
16 O -0.52 -11.61 15.86 5.56 0.09 -11.53 16
17 C -0.15 -3.01 6.16 36.01 0.22 -2.78 16
18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
19 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16
20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
22 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16
23 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16
24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16
28 H 0.10 0.38 7.72 -51.93 -0.40 -0.02 16
29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16
30 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16
32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16
33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16
35 H 0.10 0.39 7.76 -51.93 -0.40 -0.02 16
36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
37 H 0.36 2.82 8.72 -39.29 -0.34 2.48 16
38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16
40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16
42 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16
43 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16
44 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16
45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 402.13 15.07 6.06 6.06
Total: -1.00 -37.60 402.13 -10.90 -48.50
By element:
Atomic # 1 Polarization: 7.86 SS G_CDS: -6.94 Total: 0.92 kcal
Atomic # 6 Polarization: -0.69 SS G_CDS: -2.57 Total: -3.26 kcal
Atomic # 7 Polarization: -52.77 SS G_CDS: -0.31 Total: -53.07 kcal
Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -37.60 -10.90 -48.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001123792090.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.909 kcal
(2) G-P(sol) polarization free energy of solvation -37.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds