Wall clock time and date at job start Tue Mar 31 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81398 * 109.47086 * 2 1 4 4 C 1.81397 * 103.00034 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47273 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00194 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00278 * 180.02562 * 6 5 4 9 9 C 1.47029 * 125.64695 * 0.02935 * 8 6 5 10 10 C 1.54328 * 107.26933 * 178.90185 * 9 8 6 11 11 H 1.09007 * 110.71775 * 96.34552 * 10 9 8 12 12 N 1.46496 * 110.71792 * 219.43925 * 10 9 8 13 13 C 1.36934 * 120.00548 * 271.15841 * 12 10 9 14 14 H 1.08004 * 119.99288 * 0.02562 * 13 12 10 15 15 C 1.38805 * 120.00389 * 180.02562 * 13 12 10 16 16 N 1.31624 * 120.00257 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.55153 * 103.10298 * 337.89740 * 10 9 8 22 22 H 1.09005 * 111.00455 * 153.48905 * 21 10 9 23 23 N 1.46500 * 111.00415 * 277.33609 * 21 10 9 24 24 C 1.35315 * 125.86642 * 84.71499 * 23 21 10 25 25 C 1.35356 * 106.17247 * 179.90848 * 24 23 21 26 26 N 1.33773 * 106.49628 * 0.35415 * 25 24 23 27 27 N 1.28634 * 108.88705 * 359.77284 * 26 25 24 28 28 C 1.47431 * 125.64969 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47166 * 300.00373 * 1 2 3 31 31 H 1.08999 * 109.46926 * 60.00885 * 1 2 3 32 32 H 1.08996 * 109.47166 * 239.99627 * 2 1 3 33 33 H 1.08998 * 109.47013 * 119.99664 * 2 1 3 34 34 H 1.09002 * 109.47629 * 59.99535 * 4 3 2 35 35 H 1.09003 * 109.47062 * 300.00028 * 4 3 2 36 36 H 1.09002 * 109.47100 * 60.00252 * 5 4 3 37 37 H 1.08994 * 109.47526 * 300.00135 * 5 4 3 38 38 H 1.08999 * 109.88087 * 59.48845 * 9 8 6 39 39 H 1.09001 * 110.00976 * 298.39046 * 9 8 6 40 40 H 0.96999 * 119.99694 * 91.16365 * 12 10 9 41 41 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.07999 * 126.91175 * 0.02562 * 24 23 21 43 43 H 1.08005 * 126.74843 * 180.12659 * 25 24 23 44 44 H 1.08992 * 110.36406 * 323.00291 * 28 8 6 45 45 H 1.08997 * 110.36461 * 85.22180 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6064 2.8816 0.0002 6 6 6.1038 2.7118 0.0015 7 8 6.5881 1.5998 0.0023 8 7 6.9050 3.7956 0.0018 9 6 6.4535 5.1948 0.0016 10 6 7.7151 6.0833 0.0303 11 1 7.9844 6.4033 -0.9763 12 7 7.5134 7.2418 0.9039 13 6 6.9804 8.3969 0.3973 14 1 6.7083 8.4537 -0.6464 15 6 6.7897 9.4948 1.2249 16 7 6.2769 10.6049 0.7380 17 14 7.2596 9.3962 3.0302 18 1 6.0975 8.9130 3.8185 19 1 8.3958 8.4544 3.1953 20 1 7.6589 10.7430 3.5120 21 6 8.7980 5.1376 0.6137 22 1 9.7933 5.4296 0.2785 23 7 8.7291 5.0996 2.0765 24 6 7.9140 4.3080 2.8115 25 6 8.1790 4.5941 4.1076 26 7 9.1251 5.5399 4.1021 27 7 9.4293 5.8174 2.8835 28 6 8.3791 3.7744 0.0036 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2407 0.9541 -0.8889 35 1 4.2398 0.9544 0.8910 36 1 4.3030 3.4336 0.8898 37 1 4.3037 3.4326 -0.8901 38 1 5.8441 5.3879 0.8844 39 1 5.8759 5.4002 -0.8997 40 1 7.7574 7.1906 1.8413 41 1 6.1433 11.3720 1.3166 42 1 7.1977 3.5908 2.4388 43 1 7.7150 4.1492 4.9755 44 1 8.7459 2.9533 0.6194 45 1 8.7584 3.6832 -1.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129613062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:28 Heat of formation + Delta-G solvation = 91.056139 kcal Electronic energy + Delta-G solvation = -27811.410246 eV Core-core repulsion = 23993.494573 eV Total energy + Delta-G solvation = -3817.915673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.13615 -40.28737 -38.11301 -34.52673 -33.81475 -33.16228 -33.07118 -31.58943 -30.80175 -29.85124 -28.17521 -25.79880 -24.20721 -23.64085 -23.05793 -22.41016 -21.60788 -20.40220 -19.37550 -18.20527 -17.70039 -17.41303 -16.35128 -16.29958 -15.90577 -15.62515 -15.33024 -14.94215 -14.84324 -14.53821 -14.44541 -14.10300 -13.77880 -13.52176 -13.17193 -13.09891 -12.79622 -12.76505 -12.57366 -12.43896 -11.92340 -11.89614 -11.66001 -11.62023 -11.51851 -11.46156 -11.20161 -10.97433 -10.71598 -10.22902 -10.22564 -10.11824 -9.91929 -9.73325 -9.22488 -9.13255 -8.84224 -7.95947 -7.60523 -5.97063 -3.39019 1.28088 1.80168 2.27311 2.38937 2.44859 2.75975 2.81160 3.33009 3.41725 3.50206 3.92658 4.34999 4.44748 4.46876 4.54973 4.59568 4.61449 4.63131 4.67208 4.70106 5.01789 5.03924 5.12456 5.21370 5.23562 5.27613 5.33781 5.35432 5.36899 5.40978 5.42045 5.43676 5.58648 5.63146 5.71092 5.87848 5.96286 5.99522 6.17493 6.32224 6.77253 7.25438 7.70092 7.90052 8.19163 8.74469 8.93306 9.66930 9.79553 11.18693 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003306 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.451453 B = 8467.034161 C = 9476.641972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 S -0.262 6.262 4 C -0.067 4.067 5 C -0.122 4.122 6 C 0.536 3.464 7 O -0.546 6.546 8 N -0.617 5.617 9 C 0.065 3.935 10 C 0.174 3.826 11 H 0.102 0.898 12 N -0.731 5.731 13 C -0.268 4.268 14 H 0.096 0.904 15 C 0.022 3.978 16 N -0.921 5.921 17 Si 0.867 3.133 18 H -0.284 1.284 19 H -0.258 1.258 20 H -0.287 1.287 21 C 0.108 3.892 22 H 0.138 0.862 23 N -0.271 5.271 24 C -0.043 4.043 25 C -0.059 4.059 26 N -0.275 5.275 27 N -0.072 5.072 28 C 0.105 3.895 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.370 0.630 41 H 0.264 0.736 42 H 0.179 0.821 43 H 0.186 0.814 44 H 0.090 0.910 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -21.457 -2.915 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.237 4.237 3 S -0.036 6.036 4 C -0.216 4.216 5 C -0.163 4.163 6 C 0.324 3.676 7 O -0.424 6.424 8 N -0.353 5.353 9 C -0.061 4.061 10 C 0.060 3.940 11 H 0.119 0.881 12 N -0.373 5.373 13 C -0.397 4.397 14 H 0.114 0.886 15 C -0.176 4.176 16 N -0.565 5.565 17 Si 0.695 3.305 18 H -0.211 1.211 19 H -0.183 1.183 20 H -0.212 1.212 21 C 0.004 3.996 22 H 0.155 0.845 23 N -0.065 5.065 24 C -0.194 4.194 25 C -0.216 4.216 26 N -0.141 5.141 27 N -0.051 5.051 28 C -0.019 4.019 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.206 0.794 41 H 0.074 0.926 42 H 0.196 0.804 43 H 0.203 0.797 44 H 0.108 0.892 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.151 -19.843 -2.935 20.484 hybrid contribution -0.043 -1.772 1.107 2.089 sum -4.194 -21.615 -1.829 22.094 Atomic orbital electron populations 1.21517 0.92145 1.02525 1.03355 1.23294 1.00221 0.95208 1.04971 1.86999 1.05444 1.12943 1.98169 1.23053 0.92410 0.99807 1.06328 1.21336 0.91042 0.97590 1.06308 1.20173 0.88572 0.83069 0.75789 1.90713 1.76848 1.24119 1.50707 1.48607 1.06293 1.07236 1.73120 1.23478 1.00856 0.78522 1.03224 1.21541 0.89390 0.86683 0.96433 0.88076 1.42750 1.75892 1.10201 1.08434 1.18962 1.35596 0.88383 0.96715 0.88646 1.24639 0.99619 0.95569 0.97742 1.69691 1.48347 1.03080 1.35420 0.86797 0.79428 0.78012 0.86264 1.21075 1.18308 1.21249 1.23470 1.04333 0.97998 0.73777 0.84467 1.47257 1.25482 1.25294 1.08426 1.23505 1.01600 1.02251 0.92069 1.23547 1.00682 1.00384 0.96953 1.75119 1.13992 1.13526 1.11483 1.78412 1.16988 1.15109 0.94630 1.22502 0.81391 0.95705 1.02308 0.91113 0.91582 0.91595 0.90080 0.90064 0.89324 0.89318 0.87645 0.87575 0.90308 0.90239 0.79408 0.92640 0.80369 0.79732 0.89217 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.92 37.16 0.37 -0.48 16 2 C -0.09 -0.64 6.66 37.16 0.25 -0.40 16 3 S -0.26 -2.57 21.74 -107.50 -2.34 -4.91 16 4 C -0.07 -0.65 5.23 37.15 0.19 -0.45 16 5 C -0.12 -1.21 4.90 -27.89 -0.14 -1.35 16 6 C 0.54 6.28 7.62 -10.99 -0.08 6.19 16 7 O -0.55 -7.78 16.24 5.56 0.09 -7.69 16 8 N -0.62 -6.99 2.18 -170.38 -0.37 -7.36 16 9 C 0.06 0.85 5.87 -3.06 -0.02 0.84 16 10 C 0.17 2.66 3.46 -66.10 -0.23 2.43 16 11 H 0.10 1.45 8.11 -51.92 -0.42 1.03 16 12 N -0.73 -15.60 4.92 -51.65 -0.25 -15.85 16 13 C -0.27 -6.92 10.45 -15.06 -0.16 -7.08 16 14 H 0.10 2.57 8.06 -52.48 -0.42 2.15 16 15 C 0.02 0.63 5.50 -17.43 -0.10 0.54 16 16 N -0.92 -27.75 13.97 55.49 0.78 -26.97 16 17 Si 0.87 22.20 27.74 -169.99 -4.71 17.49 16 18 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.26 -6.58 6.52 56.52 0.37 -6.21 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 C 0.11 1.40 4.07 -65.67 -0.27 1.13 16 22 H 0.14 1.56 8.14 -51.93 -0.42 1.13 16 23 N -0.27 -4.24 2.44 -52.57 -0.13 -4.37 16 24 C -0.04 -0.62 10.02 -17.04 -0.17 -0.79 16 25 C -0.06 -0.89 12.05 -17.73 -0.21 -1.10 16 26 N -0.28 -5.20 12.41 30.24 0.38 -4.83 16 27 N -0.07 -1.37 12.23 60.35 0.74 -0.63 16 28 C 0.11 1.09 5.88 -2.41 -0.01 1.08 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 34 H 0.09 0.86 8.10 -51.92 -0.42 0.44 16 35 H 0.09 0.87 8.10 -51.92 -0.42 0.45 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.37 8.36 3.81 -40.82 -0.16 8.21 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.18 2.20 6.80 -52.49 -0.36 1.84 16 43 H 0.19 2.12 8.06 -52.48 -0.42 1.69 16 44 H 0.09 0.97 7.76 -51.93 -0.40 0.57 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -33.66 382.79 -7.47 -41.13 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.84 Total: 7.66 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.58 Total: 0.55 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 1.13 Total: -60.01 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.34 Total: -4.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.66 -7.47 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129613062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.189 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds