Wall clock time and date at job start Tue Mar 31 2020 22:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81398 * 109.47086 * 2 1 4 4 C 1.81397 * 103.00034 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47273 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00194 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00278 * 180.02562 * 6 5 4 9 9 C 1.47029 * 125.64695 * 0.02935 * 8 6 5 10 10 C 1.54328 * 107.26933 * 178.90185 * 9 8 6 11 11 H 1.09007 * 110.71775 * 96.34552 * 10 9 8 12 12 N 1.46496 * 110.71792 * 219.43925 * 10 9 8 13 13 C 1.36934 * 120.00548 * 271.15841 * 12 10 9 14 14 H 1.08004 * 119.99288 * 0.02562 * 13 12 10 15 15 C 1.38805 * 120.00389 * 180.02562 * 13 12 10 16 16 N 1.31624 * 120.00257 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.55153 * 103.10298 * 337.89740 * 10 9 8 22 22 H 1.09005 * 111.00455 * 153.48905 * 21 10 9 23 23 N 1.46500 * 111.00415 * 277.33609 * 21 10 9 24 24 C 1.35315 * 125.86642 * 84.71499 * 23 21 10 25 25 C 1.35356 * 106.17247 * 179.90848 * 24 23 21 26 26 N 1.33773 * 106.49628 * 0.35415 * 25 24 23 27 27 N 1.28634 * 108.88705 * 359.77284 * 26 25 24 28 28 C 1.47431 * 125.64969 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47166 * 300.00373 * 1 2 3 31 31 H 1.08999 * 109.46926 * 60.00885 * 1 2 3 32 32 H 1.08996 * 109.47166 * 239.99627 * 2 1 3 33 33 H 1.08998 * 109.47013 * 119.99664 * 2 1 3 34 34 H 1.09002 * 109.47629 * 59.99535 * 4 3 2 35 35 H 1.09003 * 109.47062 * 300.00028 * 4 3 2 36 36 H 1.09002 * 109.47100 * 60.00252 * 5 4 3 37 37 H 1.08994 * 109.47526 * 300.00135 * 5 4 3 38 38 H 1.08999 * 109.88087 * 59.48845 * 9 8 6 39 39 H 1.09001 * 110.00976 * 298.39046 * 9 8 6 40 40 H 0.96999 * 119.99694 * 91.16365 * 12 10 9 41 41 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.07999 * 126.91175 * 0.02562 * 24 23 21 43 43 H 1.08005 * 126.74843 * 180.12659 * 25 24 23 44 44 H 1.08992 * 110.36406 * 323.00291 * 28 8 6 45 45 H 1.08997 * 110.36461 * 85.22180 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6064 2.8816 0.0002 6 6 6.1038 2.7118 0.0015 7 8 6.5881 1.5998 0.0023 8 7 6.9050 3.7956 0.0018 9 6 6.4535 5.1948 0.0016 10 6 7.7151 6.0833 0.0303 11 1 7.9844 6.4033 -0.9763 12 7 7.5134 7.2418 0.9039 13 6 6.9804 8.3969 0.3973 14 1 6.7083 8.4537 -0.6464 15 6 6.7897 9.4948 1.2249 16 7 6.2769 10.6049 0.7380 17 14 7.2596 9.3962 3.0302 18 1 6.0975 8.9130 3.8185 19 1 8.3958 8.4544 3.1953 20 1 7.6589 10.7430 3.5120 21 6 8.7980 5.1376 0.6137 22 1 9.7933 5.4296 0.2785 23 7 8.7291 5.0996 2.0765 24 6 7.9140 4.3080 2.8115 25 6 8.1790 4.5941 4.1076 26 7 9.1251 5.5399 4.1021 27 7 9.4293 5.8174 2.8835 28 6 8.3791 3.7744 0.0036 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2407 0.9541 -0.8889 35 1 4.2398 0.9544 0.8910 36 1 4.3030 3.4336 0.8898 37 1 4.3037 3.4326 -0.8901 38 1 5.8441 5.3879 0.8844 39 1 5.8759 5.4002 -0.8997 40 1 7.7574 7.1906 1.8413 41 1 6.1433 11.3720 1.3166 42 1 7.1977 3.5908 2.4388 43 1 7.7150 4.1492 4.9755 44 1 8.7459 2.9533 0.6194 45 1 8.7584 3.6832 -1.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129613062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:27 Heat of formation + Delta-G solvation = 69.646859 kcal Electronic energy + Delta-G solvation = -27812.338622 eV Core-core repulsion = 23993.494573 eV Total energy + Delta-G solvation = -3818.844049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.35564 -41.30409 -39.23317 -36.14133 -35.01033 -33.97022 -33.65070 -33.44137 -32.00765 -31.05252 -29.45115 -26.73768 -25.52760 -24.82922 -23.84831 -23.65893 -22.85333 -21.65143 -20.40626 -19.90511 -18.84972 -18.44373 -17.31195 -17.27186 -16.99980 -16.75329 -16.50830 -16.02755 -15.98868 -15.68634 -15.42304 -15.20999 -14.87461 -14.78624 -14.52427 -14.19124 -13.95624 -13.84148 -13.68531 -13.24102 -13.09657 -13.03832 -12.92236 -12.76153 -12.58907 -12.50091 -12.27533 -12.22073 -12.13696 -11.96351 -11.88652 -11.32583 -11.04746 -11.00130 -10.92399 -10.37625 -9.83626 -9.50134 -8.71466 -8.11778 -5.46348 0.58178 0.59989 1.26615 1.32660 1.35418 1.43536 1.46929 1.58131 1.59768 1.81537 2.38086 2.89282 3.13991 3.35264 3.41008 3.59562 3.63329 3.75473 3.86773 3.87751 3.99788 4.03074 4.08482 4.15408 4.23212 4.27239 4.40929 4.48813 4.53188 4.55947 4.64978 4.75625 4.80532 4.86897 4.87429 4.91620 4.95636 5.04107 5.19639 5.23474 5.60761 5.69512 6.11908 6.28002 6.94446 6.97441 7.48909 7.69903 7.83049 9.07906 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003306 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.451453 B = 8467.034161 C = 9476.641972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 S -0.301 6.301 4 C -0.055 4.055 5 C -0.119 4.119 6 C 0.543 3.457 7 O -0.567 6.567 8 N -0.612 5.612 9 C 0.081 3.919 10 C 0.162 3.838 11 H 0.117 0.883 12 N -0.742 5.742 13 C -0.226 4.226 14 H 0.084 0.916 15 C -0.040 4.040 16 N -0.969 5.969 17 Si 0.919 3.081 18 H -0.289 1.289 19 H -0.258 1.258 20 H -0.298 1.298 21 C 0.109 3.891 22 H 0.154 0.846 23 N -0.269 5.269 24 C -0.034 4.034 25 C -0.063 4.063 26 N -0.311 5.311 27 N -0.112 5.112 28 C 0.113 3.887 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.365 0.635 41 H 0.258 0.742 42 H 0.200 0.800 43 H 0.217 0.783 44 H 0.093 0.907 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -24.359 -3.547 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.229 4.229 3 S -0.076 6.076 4 C -0.204 4.204 5 C -0.159 4.159 6 C 0.331 3.669 7 O -0.447 6.447 8 N -0.347 5.347 9 C -0.045 4.045 10 C 0.051 3.949 11 H 0.134 0.866 12 N -0.385 5.385 13 C -0.357 4.357 14 H 0.102 0.898 15 C -0.234 4.234 16 N -0.618 5.618 17 Si 0.749 3.251 18 H -0.216 1.216 19 H -0.183 1.183 20 H -0.225 1.225 21 C 0.006 3.994 22 H 0.172 0.828 23 N -0.063 5.063 24 C -0.186 4.186 25 C -0.221 4.221 26 N -0.176 5.176 27 N -0.091 5.091 28 C -0.010 4.010 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.217 0.783 43 H 0.233 0.767 44 H 0.111 0.889 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.298 -22.809 -3.585 23.485 hybrid contribution -0.012 -1.062 1.213 1.612 sum -4.310 -23.870 -2.371 24.372 Atomic orbital electron populations 1.21534 0.91377 1.03628 1.02851 1.23379 1.00745 0.93002 1.05743 1.87136 1.06166 1.16015 1.98241 1.22934 0.91879 0.99474 1.06099 1.21345 0.89839 0.97974 1.06765 1.20342 0.89039 0.82506 0.74986 1.90717 1.77329 1.24838 1.51810 1.48516 1.06768 1.06351 1.73031 1.23033 0.99172 0.79032 1.03225 1.21878 0.91142 0.85628 0.96281 0.86567 1.42778 1.75986 1.10763 1.08958 1.19042 1.31757 0.89082 0.95784 0.89826 1.25156 1.01755 0.96063 1.00394 1.69796 1.51857 1.03940 1.36228 0.85950 0.78753 0.76992 0.83404 1.21563 1.18297 1.22481 1.23667 1.04433 0.98749 0.72586 0.82813 1.47485 1.24975 1.24675 1.09145 1.23854 1.01093 1.01816 0.91806 1.24177 0.99827 0.99489 0.98587 1.75065 1.15590 1.15055 1.11904 1.78351 1.18762 1.16786 0.95200 1.22627 0.80622 0.93954 1.03837 0.89121 0.92153 0.92038 0.89223 0.89336 0.89438 0.89566 0.87416 0.86825 0.91815 0.88973 0.80025 0.93280 0.78325 0.76655 0.88895 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.92 71.98 0.71 -0.73 16 2 C -0.08 -1.02 6.66 71.98 0.48 -0.54 16 3 S -0.30 -5.51 21.74 -56.49 -1.23 -6.74 16 4 C -0.06 -0.95 5.23 71.98 0.38 -0.58 16 5 C -0.12 -2.07 4.90 29.85 0.15 -1.93 16 6 C 0.54 11.07 7.62 87.66 0.67 11.73 16 7 O -0.57 -14.50 16.24 -3.04 -0.05 -14.55 16 8 N -0.61 -11.79 2.18 -811.36 -1.77 -13.56 16 9 C 0.08 1.90 5.87 86.73 0.51 2.41 16 10 C 0.16 4.55 3.46 46.18 0.16 4.71 16 11 H 0.12 2.98 8.11 -2.38 -0.02 2.96 16 12 N -0.74 -30.66 4.92 -317.33 -1.56 -32.22 16 13 C -0.23 -11.57 10.45 84.03 0.88 -10.70 16 14 H 0.08 4.46 8.06 -2.91 -0.02 4.44 16 15 C -0.04 -2.30 5.50 84.86 0.47 -1.83 16 16 N -0.97 -59.66 13.97 21.65 0.30 -59.36 16 17 Si 0.92 46.97 27.74 68.60 1.90 48.87 16 18 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 19 H -0.26 -13.02 6.52 99.48 0.65 -12.37 16 20 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 21 C 0.11 2.49 4.07 46.45 0.19 2.68 16 22 H 0.15 3.03 8.14 -2.38 -0.02 3.01 16 23 N -0.27 -7.86 2.44 -320.24 -0.78 -8.65 16 24 C -0.03 -0.89 10.02 83.49 0.84 -0.05 16 25 C -0.06 -1.80 12.05 83.73 1.01 -0.79 16 26 N -0.31 -11.47 12.41 -58.25 -0.72 -12.19 16 27 N -0.11 -4.16 12.23 37.02 0.45 -3.70 16 28 C 0.11 1.92 5.88 86.93 0.51 2.44 16 29 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.09 1.52 8.10 -2.39 -0.02 1.51 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.37 16.06 3.81 -92.71 -0.35 15.71 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.20 4.26 6.80 -2.91 -0.02 4.24 16 43 H 0.22 4.38 8.06 -2.91 -0.02 4.36 16 44 H 0.09 1.65 7.76 -2.39 -0.02 1.63 16 45 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.74 382.79 4.07 -69.68 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.58 Total: 25.59 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.94 Total: 6.83 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -4.08 Total: -129.68 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.05 Total: -14.55 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.90 Total: 48.87 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.23 Total: -6.74 kcal Total: -73.74 4.07 -69.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129613062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.323 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds