Wall clock time and date at job start Tue Mar 31 2020 22:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99879 * 2 1 4 4 C 1.53001 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46639 * 179.97438 * 4 3 2 6 6 N 1.46910 * 109.46769 * 179.97438 * 5 4 3 7 7 C 1.46962 * 110.99248 * 66.18131 * 6 5 4 8 8 C 1.53051 * 109.35994 * 183.16541 * 7 6 5 9 9 N 1.46957 * 109.38374 * 301.63116 * 8 7 6 10 10 C 1.38404 * 110.99962 * 183.17751 * 9 8 7 11 11 N 1.32745 * 119.43779 * 295.73251 * 10 9 8 12 12 C 1.31470 * 121.73901 * 179.70397 * 11 10 9 13 13 C 1.40791 * 120.38879 * 0.57438 * 12 11 10 14 14 C 1.41202 * 120.56459 * 179.69588 * 13 12 11 15 15 H 1.07994 * 119.99598 * 27.46113 * 14 13 12 16 16 C 1.39864 * 119.99890 * 207.45696 * 14 13 12 17 17 N 1.30903 * 119.99964 * 13.52100 * 16 14 13 18 18 Si 1.86795 * 119.99762 * 193.52262 * 16 14 13 19 19 H 1.48493 * 109.47311 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47240 * 120.00257 * 18 16 14 21 21 H 1.48502 * 109.47171 * 239.99829 * 18 16 14 22 22 C 1.41288 * 118.87243 * 359.71793 * 13 12 11 23 23 C 1.36674 * 118.39607 * 0.02562 * 22 13 12 24 24 Cl 1.73597 * 120.25758 * 180.02562 * 23 22 13 25 25 C 1.46954 * 110.88099 * 59.30956 * 9 8 7 26 26 C 1.46954 * 110.99642 * 189.99858 * 6 5 4 27 27 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46871 * 299.99658 * 1 2 3 29 29 H 1.08995 * 109.46971 * 60.00358 * 1 2 3 30 30 H 1.09004 * 109.47242 * 60.00013 * 3 2 1 31 31 H 1.09003 * 109.47070 * 299.99839 * 3 2 1 32 32 H 1.08994 * 109.47139 * 59.99936 * 4 3 2 33 33 H 1.09003 * 109.47180 * 299.99853 * 4 3 2 34 34 H 1.09004 * 109.47315 * 60.00226 * 5 4 3 35 35 H 1.08994 * 109.47121 * 299.99679 * 5 4 3 36 36 H 1.08991 * 109.47188 * 63.21089 * 7 6 5 37 37 H 1.09004 * 109.50853 * 303.14174 * 7 6 5 38 38 H 1.09004 * 109.49091 * 181.65307 * 8 7 6 39 39 H 1.09001 * 109.49033 * 61.60501 * 8 7 6 40 40 H 1.08004 * 119.80477 * 180.29023 * 12 11 10 41 41 H 0.97007 * 119.99685 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.80052 * 179.97438 * 22 13 12 43 43 H 1.09005 * 109.49232 * 60.64690 * 25 9 8 44 44 H 1.08996 * 109.49278 * 180.69324 * 25 9 8 45 45 H 1.08992 * 109.48969 * 56.85488 * 26 6 5 46 46 H 1.08991 * 109.49249 * 296.78097 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6222 2.4664 0.0012 7 6 6.1043 1.8715 -1.2531 8 6 7.6229 1.6954 -1.1804 9 7 8.2544 3.0009 -0.9427 10 6 9.6342 2.8916 -0.9416 11 7 10.2305 2.1678 -0.0022 12 6 11.5372 2.0287 0.0383 13 6 12.3510 2.6623 -0.9200 14 6 13.7552 2.5207 -0.8762 15 1 14.1952 1.6354 -0.4414 16 6 14.5761 3.5267 -1.3959 17 7 14.0727 4.7016 -1.6782 18 14 16.3909 3.1937 -1.6873 19 1 16.7081 1.7983 -1.2905 20 1 16.7038 3.3817 -3.1268 21 1 17.2035 4.1362 -0.8770 22 6 11.7387 3.4428 -1.9261 23 6 10.3763 3.5506 -1.9262 24 17 9.5736 4.4967 -3.1404 25 6 7.7723 3.5954 0.3117 26 6 6.2536 3.7720 0.2389 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8575 0.6436 -0.8890 33 1 3.8568 0.6439 0.8909 34 1 3.8358 3.1239 0.8896 35 1 3.8364 3.1227 -0.8904 36 1 5.8538 2.5279 -2.0864 37 1 5.6322 0.9001 -1.4003 38 1 7.9865 1.2815 -2.1210 39 1 7.8717 1.0172 -0.3642 40 1 11.9894 1.4285 0.8141 41 1 14.6422 5.3995 -2.0384 42 1 12.3331 3.9428 -2.6765 43 1 8.0224 2.9388 1.1451 44 1 8.2448 4.5664 0.4593 45 1 5.8902 4.1859 1.1794 46 1 6.0052 4.4501 -0.5774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165098401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:32 Heat of formation + Delta-G solvation = -14.945730 kcal Electronic energy + Delta-G solvation = -26814.788405 eV Core-core repulsion = 22957.939688 eV Total energy + Delta-G solvation = -3856.848716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.59894 -38.46085 -37.90037 -35.57973 -35.38286 -33.94916 -32.24810 -30.62878 -30.54968 -29.60805 -27.66491 -26.42673 -24.83455 -23.65886 -23.25864 -22.07627 -21.28688 -20.91837 -19.33653 -17.60201 -16.95339 -16.47684 -16.45242 -15.70663 -15.53176 -15.14005 -15.01105 -14.56190 -14.50864 -14.26319 -14.25196 -13.95736 -13.20886 -12.98162 -12.65817 -12.36277 -12.29433 -12.07166 -11.95942 -11.88109 -11.64297 -11.48018 -11.35532 -11.29217 -11.07814 -10.94995 -10.86813 -10.72603 -10.51916 -10.40497 -10.35213 -9.94665 -9.84015 -9.51948 -8.57853 -8.25618 -8.20519 -7.74943 -7.55563 -6.99894 -4.67106 2.32147 2.71221 2.95298 2.98726 3.00868 3.32205 3.37078 3.74117 4.06761 4.35864 4.48758 4.72481 4.85398 4.99182 5.03014 5.08284 5.14075 5.25160 5.28234 5.29590 5.34097 5.47879 5.52523 5.63821 5.72161 5.76133 5.83386 5.92888 5.94891 6.06592 6.12690 6.20608 6.42433 6.49158 6.55517 6.63971 6.82164 6.86799 6.93418 7.00995 7.14185 7.16651 7.54137 7.61325 7.69445 8.05238 8.28338 8.47926 8.54278 9.32943 9.90278 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.002183 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.471903 B =12826.014754 C =13253.271457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.116 4.116 5 C 0.060 3.940 6 N -0.537 5.537 7 C 0.058 3.942 8 C 0.068 3.932 9 N -0.461 5.461 10 C 0.141 3.859 11 N -0.469 5.469 12 C -0.009 4.009 13 C 0.074 3.926 14 C -0.439 4.439 15 H 0.088 0.912 16 C 0.071 3.929 17 N -0.783 5.783 18 Si 0.917 3.083 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.131 4.131 23 C -0.009 4.009 24 Cl -0.099 7.099 25 C 0.068 3.932 26 C 0.061 3.939 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.132 0.868 41 H 0.287 0.713 42 H 0.138 0.862 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 -2.089 0.785 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.154 4.154 5 C -0.068 4.068 6 N -0.262 5.262 7 C -0.070 4.070 8 C -0.060 4.060 9 N -0.184 5.184 10 C -0.088 4.088 11 N -0.180 5.180 12 C -0.173 4.173 13 C 0.069 3.931 14 C -0.468 4.468 15 H 0.106 0.894 16 C -0.149 4.149 17 N -0.407 5.407 18 Si 0.741 3.259 19 H -0.181 1.181 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.157 4.157 23 C -0.040 4.040 24 Cl -0.071 7.071 25 C -0.060 4.060 26 C -0.067 4.067 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.150 0.850 41 H 0.098 0.902 42 H 0.155 0.845 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.925 -2.313 1.208 17.125 hybrid contribution 1.080 0.836 -0.877 1.623 sum -15.845 -1.477 0.331 15.917 Atomic orbital electron populations 1.22733 0.81143 1.02717 0.99887 1.87889 1.19600 1.28201 1.95406 1.22504 0.94386 0.84501 1.00015 1.21507 0.91970 0.97731 1.04214 1.21927 0.88125 0.96000 1.00742 1.62101 1.04690 1.24155 1.35252 1.22239 0.95629 0.99248 0.89906 1.22054 0.91959 0.90819 1.01196 1.59788 1.02552 1.22520 1.33524 1.18458 0.88496 1.04857 0.96966 1.67170 1.13539 1.14768 1.22499 1.22418 0.87871 1.06846 1.00195 1.18498 0.94588 0.90408 0.89596 1.19594 0.90405 1.03958 1.32888 0.89359 1.26034 1.02165 0.94076 0.92600 1.69803 1.38682 1.02366 1.29849 0.86104 0.80720 0.80068 0.79055 1.18113 1.19461 1.19686 1.21346 0.90569 1.03448 1.00383 1.21152 0.92704 0.97817 0.92277 1.98255 1.81159 1.71953 1.55698 1.22038 0.92637 0.99781 0.91582 1.22171 0.94808 0.89300 1.00383 0.89662 0.94131 0.94152 0.93312 0.93481 0.90944 0.90164 0.90849 0.94867 0.94234 0.90514 0.91080 0.93281 0.85041 0.90231 0.84455 0.93115 0.91015 0.90803 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.13 10.70 -35.23 -0.38 -4.51 16 3 C 0.06 0.57 5.94 37.16 0.22 0.79 16 4 C -0.12 -1.19 5.52 -26.73 -0.15 -1.34 16 5 C 0.06 0.64 4.96 -3.82 -0.02 0.62 16 6 N -0.54 -7.26 4.71 -234.46 -1.10 -8.37 16 7 C 0.06 0.82 5.41 -3.76 -0.02 0.80 16 8 C 0.07 1.18 5.45 -3.77 -0.02 1.16 16 9 N -0.46 -8.88 4.04 -172.92 -0.70 -9.58 16 10 C 0.14 3.15 5.33 -155.06 -0.83 2.33 16 11 N -0.47 -10.96 9.56 -11.75 -0.11 -11.07 16 12 C -0.01 -0.21 10.97 -16.74 -0.18 -0.40 16 13 C 0.07 1.84 5.56 -106.65 -0.59 1.25 16 14 C -0.44 -10.63 9.07 -37.85 -0.34 -10.97 16 15 H 0.09 2.02 7.88 -52.49 -0.41 1.60 16 16 C 0.07 1.64 5.23 -17.34 -0.09 1.55 16 17 N -0.78 -18.86 10.94 55.54 0.61 -18.25 16 18 Si 0.92 17.25 29.58 -169.99 -5.03 12.22 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 C -0.13 -3.24 8.49 -38.99 -0.33 -3.57 16 23 C -0.01 -0.21 6.32 -39.57 -0.25 -0.46 16 24 Cl -0.10 -2.03 28.43 -51.86 -1.47 -3.50 16 25 C 0.07 1.19 5.41 -3.76 -0.02 1.17 16 26 C 0.06 0.86 5.61 -3.76 -0.02 0.84 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.79 6.49 -51.93 -0.34 0.45 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 35 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16 38 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.05 0.93 7.99 -51.93 -0.41 0.52 16 40 H 0.13 2.87 8.06 -52.48 -0.42 2.45 16 41 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 42 H 0.14 3.51 6.32 -52.49 -0.33 3.17 16 43 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 44 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 45 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -26.49 384.44 -11.21 -37.70 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.28 Total: 4.47 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.53 Total: -4.90 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -1.31 Total: -47.27 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.38 Total: -4.51 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.47 Total: -3.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.49 -11.21 -37.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165098401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.753 kcal (2) G-P(sol) polarization free energy of solvation -26.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds