Wall clock time and date at job start Tue Mar 31 2020 22:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99879 * 2 1 4 4 C 1.53001 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46639 * 179.97438 * 4 3 2 6 6 N 1.46910 * 109.46769 * 179.97438 * 5 4 3 7 7 C 1.46962 * 110.99248 * 66.18131 * 6 5 4 8 8 C 1.53051 * 109.35994 * 183.16541 * 7 6 5 9 9 N 1.46957 * 109.38374 * 301.63116 * 8 7 6 10 10 C 1.38404 * 110.99962 * 183.17751 * 9 8 7 11 11 N 1.32745 * 119.43779 * 295.73251 * 10 9 8 12 12 C 1.31470 * 121.73901 * 179.70397 * 11 10 9 13 13 C 1.40791 * 120.38879 * 0.57438 * 12 11 10 14 14 C 1.41202 * 120.56459 * 179.69588 * 13 12 11 15 15 H 1.07994 * 119.99598 * 27.46113 * 14 13 12 16 16 C 1.39864 * 119.99890 * 207.45696 * 14 13 12 17 17 N 1.30903 * 119.99964 * 13.52100 * 16 14 13 18 18 Si 1.86795 * 119.99762 * 193.52262 * 16 14 13 19 19 H 1.48493 * 109.47311 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47240 * 120.00257 * 18 16 14 21 21 H 1.48502 * 109.47171 * 239.99829 * 18 16 14 22 22 C 1.41288 * 118.87243 * 359.71793 * 13 12 11 23 23 C 1.36674 * 118.39607 * 0.02562 * 22 13 12 24 24 Cl 1.73597 * 120.25758 * 180.02562 * 23 22 13 25 25 C 1.46954 * 110.88099 * 59.30956 * 9 8 7 26 26 C 1.46954 * 110.99642 * 189.99858 * 6 5 4 27 27 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46871 * 299.99658 * 1 2 3 29 29 H 1.08995 * 109.46971 * 60.00358 * 1 2 3 30 30 H 1.09004 * 109.47242 * 60.00013 * 3 2 1 31 31 H 1.09003 * 109.47070 * 299.99839 * 3 2 1 32 32 H 1.08994 * 109.47139 * 59.99936 * 4 3 2 33 33 H 1.09003 * 109.47180 * 299.99853 * 4 3 2 34 34 H 1.09004 * 109.47315 * 60.00226 * 5 4 3 35 35 H 1.08994 * 109.47121 * 299.99679 * 5 4 3 36 36 H 1.08991 * 109.47188 * 63.21089 * 7 6 5 37 37 H 1.09004 * 109.50853 * 303.14174 * 7 6 5 38 38 H 1.09004 * 109.49091 * 181.65307 * 8 7 6 39 39 H 1.09001 * 109.49033 * 61.60501 * 8 7 6 40 40 H 1.08004 * 119.80477 * 180.29023 * 12 11 10 41 41 H 0.97007 * 119.99685 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.80052 * 179.97438 * 22 13 12 43 43 H 1.09005 * 109.49232 * 60.64690 * 25 9 8 44 44 H 1.08996 * 109.49278 * 180.69324 * 25 9 8 45 45 H 1.08992 * 109.48969 * 56.85488 * 26 6 5 46 46 H 1.08991 * 109.49249 * 296.78097 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6222 2.4664 0.0012 7 6 6.1043 1.8715 -1.2531 8 6 7.6229 1.6954 -1.1804 9 7 8.2544 3.0009 -0.9427 10 6 9.6342 2.8916 -0.9416 11 7 10.2305 2.1678 -0.0022 12 6 11.5372 2.0287 0.0383 13 6 12.3510 2.6623 -0.9200 14 6 13.7552 2.5207 -0.8762 15 1 14.1952 1.6354 -0.4414 16 6 14.5761 3.5267 -1.3959 17 7 14.0727 4.7016 -1.6782 18 14 16.3909 3.1937 -1.6873 19 1 16.7081 1.7983 -1.2905 20 1 16.7038 3.3817 -3.1268 21 1 17.2035 4.1362 -0.8770 22 6 11.7387 3.4428 -1.9261 23 6 10.3763 3.5506 -1.9262 24 17 9.5736 4.4967 -3.1404 25 6 7.7723 3.5954 0.3117 26 6 6.2536 3.7720 0.2389 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8575 0.6436 -0.8890 33 1 3.8568 0.6439 0.8909 34 1 3.8358 3.1239 0.8896 35 1 3.8364 3.1227 -0.8904 36 1 5.8538 2.5279 -2.0864 37 1 5.6322 0.9001 -1.4003 38 1 7.9865 1.2815 -2.1210 39 1 7.8717 1.0172 -0.3642 40 1 11.9894 1.4285 0.8141 41 1 14.6422 5.3995 -2.0384 42 1 12.3331 3.9428 -2.6765 43 1 8.0224 2.9388 1.1451 44 1 8.2448 4.5664 0.4593 45 1 5.8902 4.1859 1.1794 46 1 6.0052 4.4501 -0.5774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165098401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:31 Heat of formation + Delta-G solvation = -30.181235 kcal Electronic energy + Delta-G solvation = -26815.449066 eV Core-core repulsion = 22957.939688 eV Total energy + Delta-G solvation = -3857.509378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13848 -39.72444 -38.81231 -37.15639 -36.94880 -35.58720 -33.30939 -32.41373 -31.88372 -31.25348 -28.76289 -27.40067 -26.25721 -24.77263 -24.53877 -23.79632 -22.84616 -21.97008 -20.67446 -19.41745 -18.31265 -17.46769 -17.34348 -17.14700 -16.90872 -16.37948 -16.13558 -15.95877 -15.88444 -15.63461 -15.26133 -15.08973 -14.68272 -14.33907 -14.22711 -13.97164 -13.67744 -13.30287 -13.25024 -12.96797 -12.94748 -12.82064 -12.63912 -12.59826 -12.41591 -12.21110 -12.07863 -11.96464 -11.93314 -11.77807 -11.60974 -11.47964 -11.23240 -10.59108 -10.34773 -10.06520 -9.46184 -9.36842 -9.23001 -8.75166 -6.52583 0.51948 0.85303 1.40561 1.46456 1.52562 1.56266 2.16543 2.59163 2.62505 2.96292 3.14808 3.47555 3.90583 3.95002 4.12219 4.15072 4.23038 4.26268 4.37796 4.41046 4.46965 4.51348 4.53388 4.57818 4.60298 4.62474 4.66683 4.68704 4.74012 4.83934 4.87518 4.97026 4.99674 5.04549 5.08524 5.16858 5.18948 5.24290 5.28731 5.70638 5.81214 5.99235 6.11400 6.17980 6.23754 6.28386 6.49548 6.66359 6.75954 7.48225 8.18098 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.027952 B = 0.002183 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.471903 B =12826.014754 C =13253.271457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.065 3.935 4 C -0.111 4.111 5 C 0.065 3.935 6 N -0.549 5.549 7 C 0.069 3.931 8 C 0.071 3.929 9 N -0.463 5.463 10 C 0.143 3.857 11 N -0.477 5.477 12 C -0.021 4.021 13 C 0.051 3.949 14 C -0.464 4.464 15 H 0.095 0.905 16 C 0.034 3.966 17 N -0.814 5.814 18 Si 0.990 3.010 19 H -0.253 1.253 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.146 4.146 23 C -0.020 4.020 24 Cl -0.076 7.076 25 C 0.070 3.930 26 C 0.072 3.928 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.144 0.856 41 H 0.295 0.705 42 H 0.125 0.875 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.799 -1.847 0.702 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.012 4.012 4 C -0.149 4.149 5 C -0.062 4.062 6 N -0.274 5.274 7 C -0.059 4.059 8 C -0.057 4.057 9 N -0.186 5.186 10 C -0.086 4.086 11 N -0.188 5.188 12 C -0.185 4.185 13 C 0.046 3.954 14 C -0.493 4.493 15 H 0.113 0.887 16 C -0.183 4.183 17 N -0.439 5.439 18 Si 0.810 3.190 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.172 4.172 23 C -0.051 4.051 24 Cl -0.048 7.048 25 C -0.058 4.058 26 C -0.056 4.056 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.161 0.839 41 H 0.106 0.894 42 H 0.143 0.857 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.260 -2.073 1.133 18.413 hybrid contribution 1.364 0.779 -0.853 1.787 sum -16.897 -1.294 0.280 16.949 Atomic orbital electron populations 1.22914 0.79506 1.03706 1.00897 1.87842 1.21511 1.29129 1.95631 1.22504 0.93278 0.84285 1.01159 1.21421 0.93131 0.97213 1.03089 1.21955 0.85850 0.96471 1.01970 1.62076 1.06682 1.23828 1.34800 1.22114 0.92995 1.00364 0.90435 1.22046 0.94328 0.89419 0.99915 1.59870 1.00822 1.23485 1.34386 1.18796 0.90003 1.03673 0.96135 1.67242 1.13426 1.15166 1.22968 1.22644 0.88144 1.07191 1.00481 1.18784 0.95457 0.91047 0.90108 1.19880 0.90542 1.04769 1.34072 0.88721 1.26896 1.06501 0.93359 0.91587 1.69849 1.40602 1.03275 1.30130 0.85012 0.74903 0.80063 0.78981 1.17581 1.18968 1.19034 1.21297 0.91206 1.04230 1.00512 1.21287 0.92602 0.98091 0.93105 1.98246 1.80607 1.71274 1.54650 1.22034 0.95365 0.98418 0.89999 1.22071 0.91998 0.89752 1.01785 0.88833 0.93063 0.93150 0.92050 0.92370 0.91819 0.91537 0.89254 0.93861 0.94012 0.88875 0.91884 0.95215 0.83858 0.89433 0.85714 0.95055 0.92134 0.88429 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.18 10.70 -148.98 -1.59 -9.77 16 3 C 0.06 1.01 5.94 71.98 0.43 1.44 16 4 C -0.11 -2.04 5.52 30.59 0.17 -1.87 16 5 C 0.06 1.19 4.96 86.30 0.43 1.62 16 6 N -0.55 -13.76 4.71 -895.69 -4.22 -17.98 16 7 C 0.07 1.85 5.41 86.31 0.47 2.32 16 8 C 0.07 2.45 5.45 86.31 0.47 2.92 16 9 N -0.46 -17.84 4.04 -700.98 -2.84 -20.67 16 10 C 0.14 6.52 5.33 133.32 0.71 7.23 16 11 N -0.48 -22.84 9.56 -191.08 -1.83 -24.66 16 12 C -0.02 -1.02 10.97 85.37 0.94 -0.09 16 13 C 0.05 2.61 5.56 -21.18 -0.12 2.50 16 14 C -0.46 -22.86 9.07 23.39 0.21 -22.64 16 15 H 0.09 4.38 7.88 -2.91 -0.02 4.36 16 16 C 0.03 1.56 5.23 85.22 0.45 2.00 16 17 N -0.81 -39.73 10.94 21.82 0.24 -39.50 16 18 Si 0.99 35.01 29.58 68.60 2.03 37.04 16 19 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 20 H -0.27 -9.11 7.11 99.48 0.71 -8.41 16 21 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 22 C -0.15 -7.43 8.49 22.65 0.19 -7.24 16 23 C -0.02 -0.97 6.32 22.28 0.14 -0.83 16 24 Cl -0.08 -3.11 28.43 -2.72 -0.08 -3.19 16 25 C 0.07 2.43 5.41 86.31 0.47 2.90 16 26 C 0.07 1.89 5.61 86.31 0.48 2.37 16 27 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.28 6.49 -2.39 -0.02 1.26 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 35 H 0.04 0.74 8.12 -2.39 -0.02 0.72 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 2.21 6.34 -2.38 -0.02 2.20 16 38 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 39 H 0.03 1.14 7.99 -2.39 -0.02 1.12 16 40 H 0.14 6.43 8.06 -2.91 -0.02 6.41 16 41 H 0.29 12.94 8.30 -92.70 -0.77 12.17 16 42 H 0.13 6.59 6.32 -2.91 -0.02 6.57 16 43 H 0.03 1.21 7.90 -2.38 -0.02 1.19 16 44 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 45 H 0.10 2.12 8.07 -2.39 -0.02 2.10 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -57.73 384.44 -0.64 -58.36 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.97 Total: 26.18 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 6.68 Total: -5.81 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -8.64 Total: -102.81 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.59 Total: -9.77 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -0.08 Total: -3.19 kcal Total: -57.73 -0.64 -58.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165098401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.183 kcal (2) G-P(sol) polarization free energy of solvation -57.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds